mRNA_M-pyrifera_M_contig84962.19804.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84962.19804.1
Unique NamemRNA_M-pyrifera_M_contig84962.19804.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig84962.19804.1 vs. uniprot
Match: A0A7S1D7Z7_CYCTE (60S ribosomal protein L27 n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D7Z7_CYCTE)

HSP 1 Score: 125 bits (314), Expect = 2.030e-34
Identity = 61/120 (50.83%), Postives = 88/120 (73.33%), Query Frame = 1 
Query:    1 KQGVVVVVLRGRQAGRKAVVLRVYDEGSGTRKFPHAVVVGLEKAPRKVTRAMYESD------KARVTRRISVRPFIKYVNLQHLMPTRYTLDVSGKLNTAIDDDTLADAENAAKLKRTAK 342
            K G VV+VLRGR AG KAV++R+Y+ G  +RKF HAVV G+ KAPRK+TRAM + D      + ++T+R +V+PF+K +N+ H+MPTRY+LD++  LN+ +DD TL + E  +K KRT +
Sbjct:    7 KNGRVVIVLRGRFAGHKAVIVRLYEGGRESRKFTHAVVAGVSKAPRKITRAMEKEDAKSEAKRGKITKRSTVKPFVKLINVNHVMPTRYSLDIASDLNSTLDDPTLLNPEKLSKAKRTVR 126
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BLAST of mRNA_M-pyrifera_M_contig84962.19804.1 vs. uniprot
Match: A0A7R9WDZ7_9STRA (60S ribosomal protein L27 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WDZ7_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.700e-33
Identity = 61/118 (51.69%), Postives = 82/118 (69.49%), Query Frame = 1 
Query:    1 KQGVVVVVLRGRQAGRKAVVLRVYDEGSGTRKFPHAVVVGLEKAPRKVTRAMYESDKARVTRRISVRPFIKYVNLQHLMPTRYTLDVSGKLNTAIDDDTLADAENAAKLKRTAKQLLD 354
            K G VVVVL+GR AGRKAVV+ V++EG G R+F H +V G++  P+K+T+ M    K R+ RR +V+PF+KY+NL HLMPTRY LDV+ KL   + D TL+DAE      +  K+ LD
Sbjct:    6 KPGCVVVVLQGRYAGRKAVVVNVHEEGHGDRRFSHCIVAGIDSYPKKITKGM---TKKRIARRTAVKPFVKYLNLNHLMPTRYVLDVNDKLKGIVSDSTLSDAEKRRSALKNVKKTLD 120
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BLAST of mRNA_M-pyrifera_M_contig84962.19804.1 vs. uniprot
Match: A0A5A8DDY6_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DDY6_CAFRO)

HSP 1 Score: 118 bits (295), Expect = 1.540e-31
Identity = 60/120 (50.00%), Postives = 80/120 (66.67%), Query Frame = 1 
Query:    1 KQGVVVVVLRGRQAGRKAVVLRVYDEGSGTRKFPHAVVVGLEKAPRKVTRAMYESDK------ARVTRRISVRPFIKYVNLQHLMPTRYTLDVSGKLNTAIDDDTLADAENAAKLKRTAK 342
            K G +V++LRGR AGRKAV++R+YD G G RKF HA+V G+ K PRK+TRAM + D        +VT R  V+PF  ++N+ H MPTRY LDV+  L + +DD TL DAE   K K+  +
Sbjct:    7 KNGRIVILLRGRFAGRKAVIVRLYDGGRGDRKFTHALVAGISKNPRKITRAMEKEDAKKGVKHGKVTHRSVVKPFXXHLNVNHFMPTRYVLDVASDLKSTLDDPTLLDAEKLTKAKKAVR 126
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BLAST of mRNA_M-pyrifera_M_contig84962.19804.1 vs. uniprot
Match: A0A0N7L408_PLAHL (60s ribosomal protein l27 n=2 Tax=Sar TaxID=2698737 RepID=A0A0N7L408_PLAHL)

HSP 1 Score: 117 bits (292), Expect = 2.690e-31
Identity = 59/118 (50.00%), Postives = 83/118 (70.34%), Query Frame = 1 
Query:    1 KQGVVVVVLRGRQAGRKAVVLRVYDEGSGTRKFPHAVVVGLEKAPRKVTRAMYESDKARVTRRISVRPFIKYVNLQHLMPTRYTLDVSGKLNTAIDDDTLADAENAAKLKRTAKQLLD 354
            K G VVV+L GR AGRKA+V++ +DEG G RKF HA+V G+++ PRKVTRAM    KA++ RR  V+PF+KYVN  H+MPTRY  D+   L   +DD+ LA+ E   + ++T K++ +
Sbjct:    5 KNGKVVVLLNGRFAGRKAIVVKTFDEGKGDRKFGHAIVAGIDRYPRKVTRAM---SKAKLLRRSKVKPFVKYVNYNHIMPTRYVADID--LKKVLDDEVLANPETRIESRKTIKKVFE 117
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BLAST of mRNA_M-pyrifera_M_contig84962.19804.1 vs. uniprot
Match: A0A812UZC6_9DINO (RPL27 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812UZC6_9DINO)

HSP 1 Score: 117 bits (292), Expect = 7.220e-31
Identity = 60/120 (50.00%), Postives = 79/120 (65.83%), Query Frame = 1 
Query:    1 KQGVVVVVLRGRQAGRKAVVLRVYDEGSGTRKFPHAVVVGLEKAPRKVTRAMYESDK------ARVTRRISVRPFIKYVNLQHLMPTRYTLDVSGKLNTAIDDDTLADAENAAKLKRTAK 342
            K G +V++LRGR AGRKAV++R+YD G G RKF HA+V G+ K PRK+TRAM + D        +VT R  V+PF   +N+ H MPTRY LDV+  L + +DD TL DAE   K K+  +
Sbjct:   25 KNGRIVILLRGRFAGRKAVIVRLYDGGRGDRKFTHALVAGISKNPRKITRAMEKEDAKKGVKHGKVTHRSVVKPFXXXLNVNHFMPTRYVLDVASDLKSTLDDPTLLDAEKLTKAKKAVR 144
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BLAST of mRNA_M-pyrifera_M_contig84962.19804.1 vs. uniprot
Match: M4B173_HYAAE (Uncharacterized protein n=21 Tax=Oomycota TaxID=4762 RepID=M4B173_HYAAE)

HSP 1 Score: 113 bits (283), Expect = 6.790e-30
Identity = 57/118 (48.31%), Postives = 82/118 (69.49%), Query Frame = 1 
Query:    1 KQGVVVVVLRGRQAGRKAVVLRVYDEGSGTRKFPHAVVVGLEKAPRKVTRAMYESDKARVTRRISVRPFIKYVNLQHLMPTRYTLDVSGKLNTAIDDDTLADAENAAKLKRTAKQLLD 354
            K G VVV+L GR AGRKA+V++ +DEG G RKF HA+V G+++ PRKVTR+M    KA+V +R  V+PF+KYVN  H+MPTRY  D+   L   +DD+ L + E   + ++T K++ +
Sbjct:    5 KNGKVVVLLNGRFAGRKAIVVKTFDEGRGDRKFGHAIVAGIDRYPRKVTRSM---SKAKVKQRSKVKPFVKYVNYNHIMPTRYVADID--LKKVLDDEVLGNPETRIESRKTIKKVFE 117
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BLAST of mRNA_M-pyrifera_M_contig84962.19804.1 vs. uniprot
Match: A0A0W8DKH9_PHYNI (Platelet-activating factor acetylhydrolase IB subunit alpha n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A0W8DKH9_PHYNI)

HSP 1 Score: 113 bits (283), Expect = 1.480e-29
Identity = 57/118 (48.31%), Postives = 83/118 (70.34%), Query Frame = 1 
Query:    1 KQGVVVVVLRGRQAGRKAVVLRVYDEGSGTRKFPHAVVVGLEKAPRKVTRAMYESDKARVTRRISVRPFIKYVNLQHLMPTRYTLDVSGKLNTAIDDDTLADAENAAKLKRTAKQLLD 354
            K G VVV+L GR AGRKA+V++ +DEG G RKF HA+V G+++ PRKVTRAM    K ++ +R  V+PF+KYVN  H+MPTRY  D+   L   +DD+ LA+ E+  + ++T K++ +
Sbjct:   33 KNGKVVVLLNGRFAGRKAIVVKTFDEGKGDRKFGHAIVAGIDRYPRKVTRAM---GKNKLKKRSKVKPFVKYVNYNHIMPTRYVADID--LKKVLDDEVLANPESRIESRKTIKKVFE 145
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BLAST of mRNA_M-pyrifera_M_contig84962.19804.1 vs. uniprot
Match: A0A397BII5_9STRA (Uncharacterized protein n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A0A397BII5_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.910e-29
Identity = 55/118 (46.61%), Postives = 82/118 (69.49%), Query Frame = 1 
Query:    1 KQGVVVVVLRGRQAGRKAVVLRVYDEGSGTRKFPHAVVVGLEKAPRKVTRAMYESDKARVTRRISVRPFIKYVNLQHLMPTRYTLDVSGKLNTAIDDDTLADAENAAKLKRTAKQLLD 354
            K G VVV+L GR AGRKA+V++ YDEG G RKF HA+V G+++ PRK+TR+M    K +VT+R  ++PF+KYVN  H++PTRY  D+  +L   +DD+ LA  E   + ++  K++ +
Sbjct:   17 KNGKVVVLLNGRYAGRKAIVVKTYDEGHGDRKFGHAIVAGIDRYPRKITRSM---GKKKVTKRSKIKPFVKYVNYNHILPTRYVADI--ELKKVVDDEVLATPEARIESRKIIKKVFE 129
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BLAST of mRNA_M-pyrifera_M_contig84962.19804.1 vs. uniprot
Match: A0A2D4BF17_PYTIN (60S ribosomal protein L27 n=3 Tax=Eukaryota TaxID=2759 RepID=A0A2D4BF17_PYTIN)

HSP 1 Score: 112 bits (280), Expect = 1.930e-29
Identity = 57/118 (48.31%), Postives = 84/118 (71.19%), Query Frame = 1 
Query:    1 KQGVVVVVLRGRQAGRKAVVLRVYDEGSGTRKFPHAVVVGLEKAPRKVTRAMYESDKARVTRRISVRPFIKYVNLQHLMPTRYTLDVSGKLNTAIDDDTLADAENAAKLKRTAKQLLD 354
            K G VV++L GR AGRKAVV++ +DEG G RKF HA+V G+++ PRKVTRAM    K ++ ++  V+PFIK VNL H+MPTRY +D+   L   +DD+ LA+ E+  + ++T K++ +
Sbjct:    5 KNGKVVIMLNGRFAGRKAVVVKTHDEGHGDRKFGHAIVAGIDRYPRKVTRAM---SKTKLKKKSKVKPFIKVVNLSHVMPTRYVVDID--LKKVLDDEVLANPESRIESRKTIKKVFE 117
[Close]
BLAST of mRNA_M-pyrifera_M_contig84962.19804.1 vs. uniprot
Match: A0A1V9Z0C3_9STRA (60S ribosomal protein L27 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z0C3_9STRA)

HSP 1 Score: 111 bits (277), Expect = 6.520e-29
Identity = 54/118 (45.76%), Postives = 82/118 (69.49%), Query Frame = 1 
Query:    1 KQGVVVVVLRGRQAGRKAVVLRVYDEGSGTRKFPHAVVVGLEKAPRKVTRAMYESDKARVTRRISVRPFIKYVNLQHLMPTRYTLDVSGKLNTAIDDDTLADAENAAKLKRTAKQLLD 354
            K G VVVVL GR AGRKA+V++ YDEG+G RKF HA+V G+++ PRK+TR+M    K +V +R  ++PF+K +N  H+MPTRY  D+   L   +D++ L+ AE   + ++T K++ +
Sbjct:   11 KNGKVVVVLNGRYAGRKAIVVKAYDEGNGDRKFGHAIVAGIDRYPRKITRSM---GKKKVAKRSKIKPFVKAINYNHIMPTRYVADID--LKKVLDEEVLSKAEARVESRKTIKKVFE 123
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84962.19804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1D7Z7_CYCTE2.030e-3450.8360S ribosomal protein L27 n=1 Tax=Cyclophora tenui... [more]
A0A7R9WDZ7_9STRA1.700e-3351.6960S ribosomal protein L27 n=1 Tax=Pseudictyota dub... [more]
A0A5A8DDY6_CAFRO1.540e-3150.00Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A0N7L408_PLAHL2.690e-3150.0060s ribosomal protein l27 n=2 Tax=Sar TaxID=269873... [more]
A0A812UZC6_9DINO7.220e-3150.00RPL27 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
M4B173_HYAAE6.790e-3048.31Uncharacterized protein n=21 Tax=Oomycota TaxID=47... [more]
A0A0W8DKH9_PHYNI1.480e-2948.31Platelet-activating factor acetylhydrolase IB subu... [more]
A0A397BII5_9STRA1.910e-2946.61Uncharacterized protein n=7 Tax=Saprolegniaceae Ta... [more]
A0A2D4BF17_PYTIN1.930e-2948.3160S ribosomal protein L27 n=3 Tax=Eukaryota TaxID=... [more]
A0A1V9Z0C3_9STRA6.520e-2945.7660S ribosomal protein L27 n=3 Tax=Saprolegniaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84962contigM-pyrifera_M_contig84962:3..356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue1.3e-23
Seed eggNOG ortholog36331.EPrPI00000013167
Preferred nameRPL27
KEGG rclassRC00017
KEGG koko:K02901,ko:K05288
KEGG ReactionR05923,R08107
KEGG Pathwayko00563,ko01100,ko03010,map00563,map01100,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0002181,GO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0014070,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030684,GO:0030687,GO:0030867,GO:0031090,GO:0031960,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0033993,GO:0034101,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042175,GO:0042221,GO:0042254,GO:0042592,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048534,GO:0048545,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051385,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0065008,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097305,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901654,GO:1901700,GO:1904044,GO:1990904
EggNOG free text desc.60S ribosomal protein L27. Source PGD
EggNOG OGs1MGNU@121069,COG2163@1,KOG3418@2759
COG Functional cat.J
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816757.5249836-CDS-M-pyrifera_M_contig84962:2..3561622816757.5249836-CDS-M-pyrifera_M_contig84962:2..356Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84962 3..356 -
1692278160.5129416-CDS-M-pyrifera_M_contig84962:2..3561692278160.5129416-CDS-M-pyrifera_M_contig84962:2..356Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84962 3..356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84962.19804.1prot_M-pyrifera_M_contig84962.19804.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84962 3..356 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84962.19804.1

>prot_M-pyrifera_M_contig84962.19804.1 ID=prot_M-pyrifera_M_contig84962.19804.1|Name=mRNA_M-pyrifera_M_contig84962.19804.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
KQGVVVVVLRGRQAGRKAVVLRVYDEGSGTRKFPHAVVVGLEKAPRKVTR
AMYESDKARVTRRISVRPFIKYVNLQHLMPTRYTLDVSGKLNTAIDDDTL
ADAENAAKLKRTAKQLLD
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mRNA from alignment at M-pyrifera_M_contig84962:3..356-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84962.19804.1 ID=mRNA_M-pyrifera_M_contig84962.19804.1|Name=mRNA_M-pyrifera_M_contig84962.19804.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig84962:3..356- (Macrocystis pyrifera P11B4 male)
AAGCAGGGTGTGGTGGTAGTTGTGTTGCGCGGTCGCCAAGCAGGCCGCAA
GGCTGTGGTGCTGCGTGTGTACGACGAAGGGTCTGGCACTCGCAAGTTCC
CGCACGCCGTGGTGGTTGGGCTCGAGAAGGCCCCCCGCAAGGTGACCCGC
GCCATGTACGAGTCTGACAAGGCGCGTGTGACTCGCCGCATCTCGGTGCG
CCCTTTTATCAAGTACGTCAACTTGCAACACCTCATGCCCACCCGATACA
CCCTCGATGTCTCCGGAAAGCTCAACACCGCCATCGACGACGACACCCTC
GCCGACGCAGAGAACGCAGCGAAGCTCAAGCGCACCGCAAAGCAACTCCT
CGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84962:3..356-

>mRNA_M-pyrifera_M_contig84962.19804.1 ID=mRNA_M-pyrifera_M_contig84962.19804.1|Name=mRNA_M-pyrifera_M_contig84962.19804.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig84962:3..356- (Macrocystis pyrifera P11B4 male)
AAGCAGGGTGTGGTGGTAGTTGTGTTGCGCGGTCGCCAAGCAGGCCGCAA
GGCTGTGGTGCTGCGTGTGTACGACGAAGGGTCTGGCACTCGCAAGTTCC
CGCACGCCGTGGTGGTTGGGCTCGAGAAGGCCCCCCGCAAGGTGACCCGC
GCCATGTACGAGTCTGACAAGGCGCGTGTGACTCGCCGCATCTCGGTGCG
CCCTTTTATCAAGTACGTCAACTTGCAACACCTCATGCCCACCCGATACA
CCCTCGATGTCTCCGGAAAGCTCAACACCGCCATCGACGACGACACCCTC
GCCGACGCAGAGAACGCAGCGAAGCTCAAGCGCACCGCAAAGCAACTCCT
CGACAAGCAGGGTGTGGTGGTAGTTGTGTTGCGCGGTCGCCAAGCAGGCC
GCAAGGCTGTGGTGCTGCGTGTGTACGACGAAGGGTCTGGCACTCGCAAG
TTCCCGCACGCCGTGGTGGTTGGGCTCGAGAAGGCCCCCCGCAAGGTGAC
CCGCGCCATGTACGAGTCTGACAAGGCGCGTGTGACTCGCCGCATCTCGG
TGCGCCCTTTTATCAAGTACGTCAACTTGCAACACCTCATGCCCACCCGA
TACACCCTCGATGTCTCCGGAAAGCTCAACACCGCCATCGACGACGACAC
CCTCGCCGACGCAGAGAACGCAGCGAAGCTCAAGCGCACCGCAAAGCAAC
TCCTCGAC
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