mRNA_M-pyrifera_M_contig8496.19803.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8496.19803.1
Unique NamemRNA_M-pyrifera_M_contig8496.19803.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8496.19803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8496contigM-pyrifera_M_contig8496:9197..9810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size614
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8496.19803.1prot_M-pyrifera_M_contig8496.19803.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8496 9264..9665 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816757.3533268-UTR-M-pyrifera_M_contig8496:9196..92631622816757.3533268-UTR-M-pyrifera_M_contig8496:9196..9263Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8496 9197..9263 +
1692278160.4048455-UTR-M-pyrifera_M_contig8496:9196..92631692278160.4048455-UTR-M-pyrifera_M_contig8496:9196..9263Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8496 9197..9263 +
1622816757.3761983-UTR-M-pyrifera_M_contig8496:9665..98101622816757.3761983-UTR-M-pyrifera_M_contig8496:9665..9810Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8496 9666..9810 +
1692278160.4287841-UTR-M-pyrifera_M_contig8496:9665..98101692278160.4287841-UTR-M-pyrifera_M_contig8496:9665..9810Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8496 9666..9810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816757.3650904-CDS-M-pyrifera_M_contig8496:9263..96651622816757.3650904-CDS-M-pyrifera_M_contig8496:9263..9665Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8496 9264..9665 +
1692278160.4184778-CDS-M-pyrifera_M_contig8496:9263..96651692278160.4184778-CDS-M-pyrifera_M_contig8496:9263..9665Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8496 9264..9665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8496.19803.1

>prot_M-pyrifera_M_contig8496.19803.1 ID=prot_M-pyrifera_M_contig8496.19803.1|Name=mRNA_M-pyrifera_M_contig8496.19803.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
MKYTVNGSKIRTTSRHLRGTIRSLKAHNSFVNSTERGQTRSSYSGNCPDE
ESERLQQLRRNWPITRCHVSDPRRRDERAAHRQLRYQNSESTVPYKKKQL
SDDFRFATHFPFRLRSPKELGLKNDLPPLLPQQ*
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mRNA from alignment at M-pyrifera_M_contig8496:9197..9810+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8496.19803.1 ID=mRNA_M-pyrifera_M_contig8496.19803.1|Name=mRNA_M-pyrifera_M_contig8496.19803.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=614bp|location=Sequence derived from alignment at M-pyrifera_M_contig8496:9197..9810+ (Macrocystis pyrifera P11B4 male)
AGGTCCAAGCTATTGGGAGTTCCTTTTGATAAAATGAAAAGAGCCGAAAT
GTAGCTACAAAGCAAGAATGAAATACACTGTTAATGGATCAAAAATAAGG
ACAACCTCTCGTCATTTGCGAGGTACAATTCGTTCGTTAAAAGCGCACAA
TTCGTTCGTTAACAGCACCGAGAGAGGCCAGACGCGAAGCTCCTACTCTG
GCAACTGCCCTGACGAGGAAAGCGAAAGGCTACAGCAGTTAAGGAGAAAT
TGGCCGATCACACGTTGCCATGTCTCGGACCCCCGCAGACGGGATGAGCG
AGCAGCGCACAGACAACTTCGGTATCAAAACAGTGAGTCTACTGTACCAT
ACAAAAAAAAGCAATTATCAGACGATTTTAGGTTTGCAACACACTTCCCT
TTTCGGCTTCGAAGCCCGAAGGAGTTGGGTCTGAAAAACGACTTGCCGCC
ACTGCTGCCACAGCAGTAGTATCGCCCTCAGCACAGCAACGGCACTCTAT
CCGCAAATGTTGTCATCGCCAGTATATCCTTCCTACCATATGGCCACAGT
ATGGCGTAGCCGCGTGAGCCAGTCAAAGCTAAGCGGCAGGGGGTTCGGCG
CGCCTTCATGCCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8496:9197..9810+

>mRNA_M-pyrifera_M_contig8496.19803.1 ID=mRNA_M-pyrifera_M_contig8496.19803.1|Name=mRNA_M-pyrifera_M_contig8496.19803.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig8496:9197..9810+ (Macrocystis pyrifera P11B4 male)
ATGAAATACACTGTTAATGGATCAAAAATAAGGACAACCTCTCGTCATTT
GCGAGGTACAATTCGTTCGTTAAAAGCGCACAATTCGTTCGTTAACAGCA
CCGAGAGAGGCCAGACGCGAAGCTCCTACTCTGGCAACTGCCCTGACGAG
GAAAGCGAAAGGCTACAGCAGTTAAGGAGAAATTGGCCGATCACACGTTG
CCATGTCTCGGACCCCCGCAGACGGGATGAGCGAGCAGCGCACAGACAAC
TTCGGTATCAAAACAGTGAGTCTACTGTACCATACAAAAAAAAGCAATTA
TCAGACGATTTTAGGTTTGCAACACACTTCCCTTTTCGGCTTCGAAGCCC
GAAGGAGTTGGGTCTGAAAAACGACTTGCCGCCACTGCTGCCACAGCAGT
AGATGAAATACACTGTTAATGGATCAAAAATAAGGACAACCTCTCGTCAT
TTGCGAGGTACAATTCGTTCGTTAAAAGCGCACAATTCGTTCGTTAACAG
CACCGAGAGAGGCCAGACGCGAAGCTCCTACTCTGGCAACTGCCCTGACG
AGGAAAGCGAAAGGCTACAGCAGTTAAGGAGAAATTGGCCGATCACACGT
TGCCATGTCTCGGACCCCCGCAGACGGGATGAGCGAGCAGCGCACAGACA
ACTTCGGTATCAAAACAGTGAGTCTACTGTACCATACAAAAAAAAGCAAT
TATCAGACGATTTTAGGTTTGCAACACACTTCCCTTTTCGGCTTCGAAGC
CCGAAGGAGTTGGGTCTGAAAAACGACTTGCCGCCACTGCTGCCACAGCA
GTAG
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