mRNA_M-pyrifera_M_contig84885.19780.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84885.19780.1
Unique NamemRNA_M-pyrifera_M_contig84885.19780.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig84885.19780.1 vs. uniprot
Match: A0A7Y2IHF2_9ACTN (UvrABC system protein C n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IHF2_9ACTN)

HSP 1 Score: 386 bits (992), Expect = 1.010e-128
Identity = 187/247 (75.71%), Postives = 225/247 (91.09%), Query Frame = 1 
Query:    1 RMKRASDHNARAKALNELQEYLGLPAAPLRIECYDMSHLQGTDYVGSMVVVEDGVANRREYRRFKIKTVDQNDDYAAMEEVVRRRLTAYKEDLEKPPSERGKFQYPPQLLVVDGGKGQLTSAVKVLEELDLFDSIPVASLAKRFEEVYLPYQSEPVRIPRQSEALYMLQRLRDESHRFAISYHRKLRDKRMTVSVLDDIPGLGATRKKRLLDELGGVTKVRRATLETLKALSWLPDTVAEAVYDKTH 741
            RMKRA+DHN+RA+ALNELQEYLGLP APLRIECYDMSH+QGTDYVGSMVVVEDG+  + +YRRFKIKTVDQNDD+AAMEEV+ RRLTAYK D EKP SERGKFQYPPQLLVVDGGKGQL+ A+KVL++LDLFD IP  SLAK+FEE+++P++SE +R+PRQSEALY++QR+RDESHRFAI+YHR+LRDKRMT SVLDDIPGLG  R+KRL+ E+G V KV++A++E L++L+WLPD VAEAV++K H
Sbjct:  370 RMKRATDHNSRARALNELQEYLGLPVAPLRIECYDMSHIQGTDYVGSMVVVEDGLPAKNQYRRFKIKTVDQNDDFAAMEEVLTRRLTAYKVDKEKPVSERGKFQYPPQLLVVDGGKGQLSRAIKVLQDLDLFDEIPCVSLAKQFEEIFVPHESESIRLPRQSEALYLMQRIRDESHRFAITYHRQLRDKRMTKSVLDDIPGLGPARQKRLVKEMGSVKKVKQASIEELRSLTWLPDVVAEAVFEKVH 616
[Close]
BLAST of mRNA_M-pyrifera_M_contig84885.19780.1 vs. uniprot
Match: A0A349B557_9ACTN (Excinuclease ABC subunit C (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B557_9ACTN)

HSP 1 Score: 363 bits (933), Expect = 1.080e-122
Identity = 184/248 (74.19%), Postives = 217/248 (87.50%), Query Frame = 1 
Query:    1 RMKRASDHNARAKALNELQEYLGLPAAPLRIECYDMSHLQGTDYVGSMVVVEDGVANRREYRRFKIKTVDQNDDYAAMEEVVRRRLTAYKEDLEKPPSER-GKFQYPPQLLVVDGGKGQLTSAVKVLEELDLFDSIPVASLAKRFEEVYLPYQSEPVRIPRQSEALYMLQRLRDESHRFAISYHRKLRDKRMTVSVLDDIPGLGATRKKRLLDELGGVTKVRRATLETLKALSWLPDTVAEAVYDKTH 741
            R+KRASDHN+RA+ALNELQE+LGLP APLRIECYDMSH QG+DYVGSMVV EDG+  + EYRRFKIK VD N+D+AAMEEV+RRRLTAY  + +KP SER GKF YPPQLL+VDGGKGQLTSA+ VL+ELDLFD IPVASLAK+FEEVY+P +S+P++IPRQSEALY+LQRLRDESHRFAI+YHR LRDKRM  SVLDD+PGLG TR+KRLL E+G + KV+ ATLE L++ SWLP+ VAE V+ + H
Sbjct:  151 RLKRASDHNSRARALNELQEHLGLPEAPLRIECYDMSHFQGSDYVGSMVVTEDGLPKKSEYRRFKIKEVDGNNDFAAMEEVLRRRLTAYLIERDKPASERPGKFAYPPQLLLVDGGKGQLTSAINVLKELDLFDEIPVASLAKQFEEVYVPGRSDPIQIPRQSEALYLLQRLRDESHRFAITYHRTLRDKRMKQSVLDDVPGLGPTRRKRLLKEMGSLRKVKAATLEELQSFSWLPNNVAENVWKQLH 398
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BLAST of mRNA_M-pyrifera_M_contig84885.19780.1 vs. uniprot
Match: A0A6J5ZMS7_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J5ZMS7_9ZZZZ)

HSP 1 Score: 360 bits (924), Expect = 3.390e-122
Identity = 181/248 (72.98%), Postives = 219/248 (88.31%), Query Frame = 1 
Query:    1 RMKRASDHNARAKALNELQEYLGLPAAPLRIECYDMSHLQGTDYVGSMVVVEDGVANRREYRRFKIKTVDQNDDYAAMEEVVRRRLTAYKEDLEKPPSER-GKFQYPPQLLVVDGGKGQLTSAVKVLEELDLFDSIPVASLAKRFEEVYLPYQSEPVRIPRQSEALYMLQRLRDESHRFAISYHRKLRDKRMTVSVLDDIPGLGATRKKRLLDELGGVTKVRRATLETLKALSWLPDTVAEAVYDKTH 741
            R+KRA+DHN+RA+ALN+LQ++LGLP APLRIECYDMSH+QG+DYVGSMVV+EDG+ N+REYRRFKIK+   NDD+AAMEEV+ RRLTAY E+  KP +ER GKF YPPQLL+VDGGKGQL+ AVKVLE L L + IPVASLAKRFEEVYLP++SEPV +PR SEALY+LQR+RDE+HRFA+S+HR+LR KRMT SVLD IPGLG  R+ RL+ ELGGVT V++ATLE L+A+SWLPD+VA+AV+DK H
Sbjct:   87 RLKRAADHNSRARALNDLQQHLGLPEAPLRIECYDMSHIQGSDYVGSMVVMEDGLPNKREYRRFKIKSDQGNDDFAAMEEVLTRRLTAYVEERGKPVAERSGKFAYPPQLLLVDGGKGQLSVAVKVLEALGLDEEIPVASLAKRFEEVYLPHRSEPVEVPRGSEALYLLQRIRDEAHRFAVSFHRELRGKRMTTSVLDGIPGLGEARRSRLVKELGGVTAVKKATLEELQAISWLPDSVAQAVWDKIH 334
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BLAST of mRNA_M-pyrifera_M_contig84885.19780.1 vs. uniprot
Match: A0A6J6QI42_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J6QI42_9ZZZZ)

HSP 1 Score: 360 bits (924), Expect = 1.040e-120
Identity = 181/248 (72.98%), Postives = 219/248 (88.31%), Query Frame = 1 
Query:    1 RMKRASDHNARAKALNELQEYLGLPAAPLRIECYDMSHLQGTDYVGSMVVVEDGVANRREYRRFKIKTVDQNDDYAAMEEVVRRRLTAYKEDLEKPPSER-GKFQYPPQLLVVDGGKGQLTSAVKVLEELDLFDSIPVASLAKRFEEVYLPYQSEPVRIPRQSEALYMLQRLRDESHRFAISYHRKLRDKRMTVSVLDDIPGLGATRKKRLLDELGGVTKVRRATLETLKALSWLPDTVAEAVYDKTH 741
            R+KRA+DHN+RA+ALN+LQ++LGLP APLRIECYDMSH+QG+DYVGSMVV+EDG+ N+REYRRFKIK+   NDD+AAMEEV+ RRLTAY E+  KP +ER GKF YPPQLL+VDGGKGQL+ AVKVLE L L + IPVASLAKRFEEVYLP++SEPV +PR SEALY+LQR+RDE+HRFA+S+HR+LR KRMT SVLD IPGLG  R+ RL+ ELGGVT V++ATLE L+A+SWLPD+VA+AV+DK H
Sbjct:  191 RLKRAADHNSRARALNDLQQHLGLPEAPLRIECYDMSHIQGSDYVGSMVVMEDGLPNKREYRRFKIKSDQGNDDFAAMEEVLTRRLTAYVEERGKPVAERSGKFAYPPQLLLVDGGKGQLSVAVKVLEALGLDEEIPVASLAKRFEEVYLPHRSEPVEVPRGSEALYLLQRIRDEAHRFAVSFHRELRGKRMTTSVLDGIPGLGEARRSRLVKELGGVTAVKKATLEELQAISWLPDSVAQAVWDKIH 438
[Close]
BLAST of mRNA_M-pyrifera_M_contig84885.19780.1 vs. uniprot
Match: A0A7X6P1A9_9ACTN (UvrABC system protein C n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6P1A9_9ACTN)

HSP 1 Score: 365 bits (937), Expect = 3.430e-120
Identity = 187/252 (74.21%), Postives = 217/252 (86.11%), Query Frame = 1 
Query:    1 RMKRASDHNARAKALNELQEYLGLPAAPLRIECYDMSHLQGTDYVGSMVVVEDGVANRREYRRFKIKTVD-----QNDDYAAMEEVVRRRLTAYKEDLEKPPSERGKFQYPPQLLVVDGGKGQLTSAVKVLEELDLFDSIPVASLAKRFEEVYLPYQSEPVRIPRQSEALYMLQRLRDESHRFAISYHRKLRDKRMTVSVLDDIPGLGATRKKRLLDELGGVTKVRRATLETLKALSWLPDTVAEAVYDKTH 741
            R++RASDHN+RAKALNELQEYL LP APLRIEC+DMSH+QGTDYVGSMVV+ DG+ ++REYRRFK+KTV       +DD+AAMEEV+ RR T Y ED  +P +ERGKFQYPPQLLVVDGGKGQL+ AV+VLE L L + IPV SLAK+FEEVYLPYQS PVR+PRQSEAL++LQR+RDESHRFAIS+HR+LR KRMT SVLDDI GLG  RKKRL+ ELGGV  V+ A+LETL+ALSWLPD+VAEAVYDK H
Sbjct:  370 RLRRASDHNSRAKALNELQEYLDLPEAPLRIECFDMSHIQGTDYVGSMVVMTDGLPDKREYRRFKVKTVGGKVIGDSDDFAAMEEVLTRRFTNYLEDRTRPVAERGKFQYPPQLLVVDGGKGQLSVAVRVLESLGLAEEIPVCSLAKQFEEVYLPYQSMPVRVPRQSEALFLLQRIRDESHRFAISFHRELRGKRMTRSVLDDIAGLGEVRKKRLISELGGVNSVKVASLETLQALSWLPDSVAEAVYDKCH 621
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BLAST of mRNA_M-pyrifera_M_contig84885.19780.1 vs. uniprot
Match: A0A7Y2DE79_9ACTN (UvrABC system protein C n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DE79_9ACTN)

HSP 1 Score: 363 bits (932), Expect = 1.170e-119
Identity = 185/247 (74.90%), Postives = 210/247 (85.02%), Query Frame = 1 
Query:    1 RMKRASDHNARAKALNELQEYLGLPAAPLRIECYDMSHLQGTDYVGSMVVVEDGVANRREYRRFKIKTVDQNDDYAAMEEVVRRRLTAYKEDLEKPPSERGKFQYPPQLLVVDGGKGQLTSAVKVLEELDLFDSIPVASLAKRFEEVYLPYQSEPVRIPRQSEALYMLQRLRDESHRFAISYHRKLRDKRMTVSVLDDIPGLGATRKKRLLDELGGVTKVRRATLETLKALSWLPDTVAEAVYDKTH 741
            RMKRA+DHN+R++ALNELQEYLGLP APLRIECYDMSH+QGTDYVGSMVVVEDG+A + EYRRFKIKTVD NDD+AAMEEV+ RR   Y ED  KP  ERGKF YPPQLLVVDGGKGQL+ A +VL+ELDL D IPV SLAK+FEEV++P +SE +R+PRQSEALY+LQRLRDESHRFAI+YHR+LRDKRMT SVLDDIPGLG  RKKRL+ E GGV KV+ A LE L  LSWLP+ VA  VY+  H
Sbjct:  368 RMKRATDHNSRSRALNELQEYLGLPEAPLRIECYDMSHIQGTDYVGSMVVVEDGLAKKSEYRRFKIKTVDGNDDFAAMEEVLFRRFRNYVEDRAKPVEERGKFAYPPQLLVVDGGKGQLSVARRVLDELDLSDEIPVCSLAKQFEEVFVPGRSESIRLPRQSEALYLLQRLRDESHRFAITYHRQLRDKRMTKSVLDDIPGLGPARKKRLIKEFGGVRKVQAAELEELTRLSWLPEAVATTVYEHLH 614
[Close]
BLAST of mRNA_M-pyrifera_M_contig84885.19780.1 vs. uniprot
Match: A0A6J6EQI0_9ZZZZ (Unannotated protein n=11 Tax=root TaxID=1 RepID=A0A6J6EQI0_9ZZZZ)

HSP 1 Score: 360 bits (924), Expect = 2.690e-118
Identity = 181/248 (72.98%), Postives = 219/248 (88.31%), Query Frame = 1 
Query:    1 RMKRASDHNARAKALNELQEYLGLPAAPLRIECYDMSHLQGTDYVGSMVVVEDGVANRREYRRFKIKTVDQNDDYAAMEEVVRRRLTAYKEDLEKPPSER-GKFQYPPQLLVVDGGKGQLTSAVKVLEELDLFDSIPVASLAKRFEEVYLPYQSEPVRIPRQSEALYMLQRLRDESHRFAISYHRKLRDKRMTVSVLDDIPGLGATRKKRLLDELGGVTKVRRATLETLKALSWLPDTVAEAVYDKTH 741
            R+KRA+DHN+RA+ALN+LQ++LGLP APLRIECYDMSH+QG+DYVGSMVV+EDG+ N+REYRRFKIK+   NDD+AAMEEV+ RRLTAY E+  KP +ER GKF YPPQLL+VDGGKGQL+ AVKVLE L L + IPVASLAKRFEEVYLP++SEPV +PR SEALY+LQR+RDE+HRFA+S+HR+LR KRMT SVLD IPGLG  R+ RL+ ELGGVT V++ATLE L+A+SWLPD+VA+AV+DK H
Sbjct:  377 RLKRAADHNSRARALNDLQQHLGLPEAPLRIECYDMSHIQGSDYVGSMVVMEDGLPNKREYRRFKIKSDQGNDDFAAMEEVLTRRLTAYVEERGKPVAERSGKFAYPPQLLLVDGGKGQLSVAVKVLEALGLDEEIPVASLAKRFEEVYLPHRSEPVEVPRGSEALYLLQRIRDEAHRFAVSFHRELRGKRMTTSVLDGIPGLGEARRSRLVKELGGVTAVKKATLEELQAISWLPDSVAQAVWDKIH 624
[Close]
BLAST of mRNA_M-pyrifera_M_contig84885.19780.1 vs. uniprot
Match: A0A5Q2RI32_9ACTN (UvrABC system protein C n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RI32_9ACTN)

HSP 1 Score: 360 bits (924), Expect = 2.760e-118
Identity = 183/249 (73.49%), Postives = 215/249 (86.35%), Query Frame = 1 
Query:    1 RMKRASDHNARAKALNELQEYLGLPAAPLRIECYDMSHLQGTDYVGSMVVVEDGVANRREYRRFKIKTVDQNDDYAAMEEVVRRRLTAYKEDLEKPPSER-GKFQYPPQLLVVDGGKGQLTSAVKVLEELDLFDSIPVASLAKRFEEVYLPYQSEPVRIPRQSEALYMLQRLRDESHRFAISYHRKLRDKRMTVSVLDDIPGLGATRKKRLLDELGGVTKVRRATLETLKALSWLPDTVAEAVYDKTHG 744
            R++RASDHNARA+ALNELQE LGLP APLRIEC+DMSH+QGTDYVGSMVVVEDG+  + EYRRFKI+ V  NDD+AAMEEV+ RR   Y ++ E P SER G+F YPP LLVVDGGKGQL  AV+VL+EL L D IPVASLAK+FEEV+LP Q +PVR+PRQSEALY+LQR+RDESHRFAI+YHR+LR +RMT SVLDDIPGLG TRKKRL+ ELGGVT V+RA+L+TL+ LSWLPD VA+A+Y+K HG
Sbjct:  369 RLRRASDHNARAQALNELQEQLGLPEAPLRIECFDMSHIQGTDYVGSMVVVEDGLPKKSEYRRFKIRDVAGNDDFAAMEEVLTRRFRNYLQERETPVSEREGRFSYPPNLLVVDGGKGQLNVAVRVLQELGLDDEIPVASLAKQFEEVFLPGQPDPVRLPRQSEALYLLQRIRDESHRFAITYHRQLRGRRMTRSVLDDIPGLGPTRKKRLVKELGGVTAVKRASLDTLRGLSWLPDAVADAIYEKVHG 617
[Close]
BLAST of mRNA_M-pyrifera_M_contig84885.19780.1 vs. uniprot
Match: UPI001D0F61AB (excinuclease ABC subunit UvrC n=1 Tax=Aquihabitans sp. Kera 3 TaxID=2884263 RepID=UPI001D0F61AB)

HSP 1 Score: 355 bits (912), Expect = 1.190e-116
Identity = 185/247 (74.90%), Postives = 211/247 (85.43%), Query Frame = 1 
Query:    1 RMKRASDHNARAKALNELQEYLGLPAAPLRIECYDMSHLQGTDYVGSMVVVEDGVANRREYRRFKIKTVDQNDDYAAMEEVVRRRLTAYKEDLEKPPSERGKFQYPPQLLVVDGGKGQLTSAVKVLEELDLFDSIPVASLAKRFEEVYLPYQSEPVRIPRQSEALYMLQRLRDESHRFAISYHRKLRDKRMTVSVLDDIPGLGATRKKRLLDELGGVTKVRRATLETLKALSWLPDTVAEAVYDKTH 741
            R+KRASDHN+RAKALNELQ+ L LPAAPLRIECYDMSHLQGTDYVGSMVV+EDG+  ++EYRRFKI+TV  NDD+AAMEEV+ RRLT Y  D +KPP+ERG+F YPPQLL+VDGGKGQL  AVKVLEEL L D IPVASLAKRFEEVYLP +SEPV + R SEAL++LQR+RDESHRFAI+YHR+LR KRMT SVLD IPGLG  RK+RL+ ELGGV  V+ A L TL+AL WLPD+VA AVYD  H
Sbjct:  370 RLKRASDHNSRAKALNELQDALHLPAAPLRIECYDMSHLQGTDYVGSMVVLEDGLPRKQEYRRFKIRTVAGNDDFAAMEEVLTRRLTNYLADRDKPPAERGRFAYPPQLLLVDGGKGQLGVAVKVLEELGLADEIPVASLAKRFEEVYLPGRSEPVEVRRGSEALFLLQRIRDESHRFAITYHRELRGKRMTRSVLDGIPGLGDKRKQRLVKELGGVRAVQAADLATLQALPWLPDSVAGAVYDALH 616
[Close]
BLAST of mRNA_M-pyrifera_M_contig84885.19780.1 vs. uniprot
Match: UPI001C62E51F (excinuclease ABC subunit UvrC n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C62E51F)

HSP 1 Score: 355 bits (911), Expect = 2.420e-116
Identity = 185/248 (74.60%), Postives = 212/248 (85.48%), Query Frame = 1 
Query:    1 RMKRASDHNARAKALNELQEYLGLPAAPLRIECYDMSHLQGTDYVGSMVVVEDGVANRREYRRFKIKTVDQNDDYAAMEEVVRRRLTAYKEDLEKPPSER-GKFQYPPQLLVVDGGKGQLTSAVKVLEELDLFDSIPVASLAKRFEEVYLPYQSEPVRIPRQSEALYMLQRLRDESHRFAISYHRKLRDKRMTVSVLDDIPGLGATRKKRLLDELGGVTKVRRATLETLKALSWLPDTVAEAVYDKTH 741
            R+KRASDHN+RAKALNELQE LGLP  PLRIECYDMSHLQGTDYVGSMVV+ED +  + +YR+FKIKTV  NDD+AAMEEV+RRRLTAY  + EKP SER G+F YPPQLL+VDGGKGQL+ AV+VL+EL L + IP ASLAKRFEEVYLP  ++PVR+ RQSEALY+LQR+RDESHRFAI++HR LR KRMT SVLDDIPGLG TRKKRL  E+GGV  V+ A+LE LKALSWLPD VAEAV+ K H
Sbjct:  383 RLKRASDHNSRAKALNELQEALGLPMPPLRIECYDMSHLQGTDYVGSMVVLEDALPKKSQYRKFKIKTVAGNDDFAAMEEVLRRRLTAYLVEREKPVSEREGRFSYPPQLLLVDGGKGQLSVAVRVLQELGLDEEIPTASLAKRFEEVYLPGTADPVRLSRQSEALYLLQRIRDESHRFAITFHRDLRGKRMTKSVLDDIPGLGETRKKRLTKEMGGVKAVQTASLEELKALSWLPDAVAEAVHAKVH 630
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84885.19780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2IHF2_9ACTN1.010e-12875.71UvrABC system protein C n=1 Tax=Acidimicrobiales b... [more]
A0A349B557_9ACTN1.080e-12274.19Excinuclease ABC subunit C (Fragment) n=1 Tax=Acid... [more]
A0A6J5ZMS7_9ZZZZ3.390e-12272.98Unannotated protein n=1 Tax=freshwater metagenome ... [more]
A0A6J6QI42_9ZZZZ1.040e-12072.98Unannotated protein n=1 Tax=freshwater metagenome ... [more]
A0A7X6P1A9_9ACTN3.430e-12074.21UvrABC system protein C n=1 Tax=Actinomycetia bact... [more]
A0A7Y2DE79_9ACTN1.170e-11974.90UvrABC system protein C n=1 Tax=Acidimicrobiales b... [more]
A0A6J6EQI0_9ZZZZ2.690e-11872.98Unannotated protein n=11 Tax=root TaxID=1 RepID=A0... [more]
A0A5Q2RI32_9ACTN2.760e-11873.49UvrABC system protein C n=1 Tax=Actinomarinicola t... [more]
UPI001D0F61AB1.190e-11674.90excinuclease ABC subunit UvrC n=1 Tax=Aquihabitans... [more]
UPI001C62E51F2.420e-11674.60excinuclease ABC subunit UvrC n=1 Tax=Iamia sp. SC... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84885contigM-pyrifera_M_contig84885:3..758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score330.1
Seed ortholog evalue9e-88
Seed eggNOG ortholog1229780.BN381_50096
Preferred nameuvrC
KEGG koko:K03703
KEGG Pathwayko03420,map03420
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0008152,GO:0009314,GO:0009380,GO:0009381,GO:0009432,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0016020,GO:0016787,GO:0016788,GO:0030312,GO:0031668,GO:0032991,GO:0033554,GO:0034641,GO:0040007,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071496,GO:0071704,GO:0071944,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1902494,GO:1905347,GO:1905348,GO:1990391
EggNOG free text desc.The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
EggNOG OGs2GIS4@201174,3UWEG@52018,COG0322@1,COG0322@2
Ec32 ortholog descriptionRuvA domain 2-like
Ec32 orthologEc-26_003920.1
COG Functional cat.L
Best tax levelunclassified Actinobacteria (class)
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Exons1
Model size756
Cds size753
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816756.2208376-UTR-M-pyrifera_M_contig84885:2..51622816756.2208376-UTR-M-pyrifera_M_contig84885:2..5Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84885 3..5 +
1692278159.709921-UTR-M-pyrifera_M_contig84885:2..51692278159.709921-UTR-M-pyrifera_M_contig84885:2..5Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84885 3..5 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816756.2319822-CDS-M-pyrifera_M_contig84885:5..7581622816756.2319822-CDS-M-pyrifera_M_contig84885:5..758Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84885 6..758 +
1692278159.723648-CDS-M-pyrifera_M_contig84885:5..7581692278159.723648-CDS-M-pyrifera_M_contig84885:5..758Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84885 6..758 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84885.19780.1prot_M-pyrifera_M_contig84885.19780.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84885 6..758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84885.19780.1

>prot_M-pyrifera_M_contig84885.19780.1 ID=prot_M-pyrifera_M_contig84885.19780.1|Name=mRNA_M-pyrifera_M_contig84885.19780.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=251bp
MKRASDHNARAKALNELQEYLGLPAAPLRIECYDMSHLQGTDYVGSMVVV
EDGVANRREYRRFKIKTVDQNDDYAAMEEVVRRRLTAYKEDLEKPPSERG
KFQYPPQLLVVDGGKGQLTSAVKVLEELDLFDSIPVASLAKRFEEVYLPY
QSEPVRIPRQSEALYMLQRLRDESHRFAISYHRKLRDKRMTVSVLDDIPG
LGATRKKRLLDELGGVTKVRRATLETLKALSWLPDTVAEAVYDKTHGMTS
*
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mRNA from alignment at M-pyrifera_M_contig84885:3..758+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84885.19780.1 ID=mRNA_M-pyrifera_M_contig84885.19780.1|Name=mRNA_M-pyrifera_M_contig84885.19780.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig84885:3..758+ (Macrocystis pyrifera P11B4 male)
CGCATGAAACGGGCGTCAGACCACAACGCTCGAGCCAAGGCGCTCAACGA
GCTCCAGGAATACCTCGGCCTGCCGGCGGCTCCGTTGCGCATCGAGTGCT
ACGACATGAGTCACCTGCAGGGCACCGACTACGTCGGGTCGATGGTCGTC
GTCGAAGACGGCGTCGCCAATCGTCGTGAATACCGACGCTTCAAGATCAA
GACCGTCGACCAGAACGACGACTACGCCGCCATGGAAGAAGTCGTGCGCC
GCCGGCTCACCGCCTACAAAGAAGACCTCGAGAAGCCCCCGTCAGAGCGA
GGCAAGTTCCAGTACCCACCCCAGCTCTTGGTGGTCGACGGCGGCAAGGG
GCAGCTCACCTCGGCGGTCAAGGTCCTCGAAGAACTCGATCTGTTCGATT
CGATTCCTGTGGCCTCCTTGGCCAAGCGATTCGAAGAGGTCTACCTGCCG
TACCAGTCCGAGCCCGTGCGCATCCCACGCCAGTCCGAGGCGCTCTACAT
GCTGCAGCGGCTTCGAGACGAGTCGCACCGATTCGCCATCAGCTATCACC
GCAAACTGCGCGACAAGCGAATGACCGTCTCGGTCCTCGACGACATCCCG
GGCCTCGGGGCCACCAGGAAGAAGCGCCTTCTCGACGAACTCGGGGGCGT
CACCAAGGTCCGTCGGGCCACCCTCGAGACGCTGAAAGCGCTGTCGTGGT
TGCCCGACACCGTCGCCGAAGCGGTGTACGACAAGACTCATGGCATGACC
TCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84885:3..758+

>mRNA_M-pyrifera_M_contig84885.19780.1 ID=mRNA_M-pyrifera_M_contig84885.19780.1|Name=mRNA_M-pyrifera_M_contig84885.19780.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1506bp|location=Sequence derived from alignment at M-pyrifera_M_contig84885:3..758+ (Macrocystis pyrifera P11B4 male)
ATGAAACGGGCGTCAGACCACAACGCTCGAGCCAAGGCGCTCAACGAGCT
CCAGGAATACCTCGGCCTGCCGGCGGCTCCGTTGCGCATCGAGTGCTACG
ACATGAGTCACCTGCAGGGCACCGACTACGTCGGGTCGATGGTCGTCGTC
GAAGACGGCGTCGCCAATCGTCGTGAATACCGACGCTTCAAGATCAAGAC
CGTCGACCAGAACGACGACTACGCCGCCATGGAAGAAGTCGTGCGCCGCC
GGCTCACCGCCTACAAAGAAGACCTCGAGAAGCCCCCGTCAGAGCGAGGC
AAGTTCCAGTACCCACCCCAGCTCTTGGTGGTCGACGGCGGCAAGGGGCA
GCTCACCTCGGCGGTCAAGGTCCTCGAAGAACTCGATCTGTTCGATTCGA
TTCCTGTGGCCTCCTTGGCCAAGCGATTCGAAGAGGTCTACCTGCCGTAC
CAGTCCGAGCCCGTGCGCATCCCACGCCAGTCCGAGGCGCTCTACATGCT
GCAGCGGCTTCGAGACGAGTCGCACCGATTCGCCATCAGCTATCACCGCA
AACTGCGCGACAAGCGAATGACCGTCTCGGTCCTCGACGACATCCCGGGC
CTCGGGGCCACCAGGAAGAAGCGCCTTCTCGACGAACTCGGGGGCGTCAC
CAAGGTCCGTCGGGCCACCCTCGAGACGCTGAAAGCGCTGTCGTGGTTGC
CCGACACCGTCGCCGAAGCGGTGTACGACAAGACTCATGGCATGACCTCG
TGAATGAAACGGGCGTCAGACCACAACGCTCGAGCCAAGGCGCTCAACGA
GCTCCAGGAATACCTCGGCCTGCCGGCGGCTCCGTTGCGCATCGAGTGCT
ACGACATGAGTCACCTGCAGGGCACCGACTACGTCGGGTCGATGGTCGTC
GTCGAAGACGGCGTCGCCAATCGTCGTGAATACCGACGCTTCAAGATCAA
GACCGTCGACCAGAACGACGACTACGCCGCCATGGAAGAAGTCGTGCGCC
GCCGGCTCACCGCCTACAAAGAAGACCTCGAGAAGCCCCCGTCAGAGCGA
GGCAAGTTCCAGTACCCACCCCAGCTCTTGGTGGTCGACGGCGGCAAGGG
GCAGCTCACCTCGGCGGTCAAGGTCCTCGAAGAACTCGATCTGTTCGATT
CGATTCCTGTGGCCTCCTTGGCCAAGCGATTCGAAGAGGTCTACCTGCCG
TACCAGTCCGAGCCCGTGCGCATCCCACGCCAGTCCGAGGCGCTCTACAT
GCTGCAGCGGCTTCGAGACGAGTCGCACCGATTCGCCATCAGCTATCACC
GCAAACTGCGCGACAAGCGAATGACCGTCTCGGTCCTCGACGACATCCCG
GGCCTCGGGGCCACCAGGAAGAAGCGCCTTCTCGACGAACTCGGGGGCGT
CACCAAGGTCCGTCGGGCCACCCTCGAGACGCTGAAAGCGCTGTCGTGGT
TGCCCGACACCGTCGCCGAAGCGGTGTACGACAAGACTCATGGCATGACC
TCGTGA
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