mRNA_M-pyrifera_M_contig84883.19778.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84883.19778.1
Unique NamemRNA_M-pyrifera_M_contig84883.19778.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig84883.19778.1 vs. uniprot
Match: A0A434AE27_9BACT (30S ribosomal protein S2 n=4 Tax=cellular organisms TaxID=131567 RepID=A0A434AE27_9BACT)

HSP 1 Score: 133 bits (335), Expect = 1.020e-38
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 QQEEYTALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRNS 201
            QQEEYTALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIR ILNKLVFAICEGRSSYI+NS
Sbjct:   74 QQEEYTALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRFILNKLVFAICEGRSSYIQNS 140
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BLAST of mRNA_M-pyrifera_M_contig84883.19778.1 vs. uniprot
Match: B9RL72_RICCO (30S ribosomal protein S2, putative n=2 Tax=Ricinus communis TaxID=3988 RepID=B9RL72_RICCO)

HSP 1 Score: 132 bits (332), Expect = 1.340e-38
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 QQEEYTALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRN 198
            QQE+YTALRECITLGIPTICLIDTNCDPDLADISIPANDD IASIRLILNKLVFAICEGRSSYIRN
Sbjct:   48 QQEDYTALRECITLGIPTICLIDTNCDPDLADISIPANDDTIASIRLILNKLVFAICEGRSSYIRN 113
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BLAST of mRNA_M-pyrifera_M_contig84883.19778.1 vs. uniprot
Match: A0A822ZV14_NELNU (Uncharacterized protein n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822ZV14_NELNU)

HSP 1 Score: 131 bits (329), Expect = 1.870e-38
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 QQEEYTALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRN 198
            QQEEYTALREC+TLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKL+ AICEGRSSYIRN
Sbjct:   24 QQEEYTALRECVTLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLISAICEGRSSYIRN 89
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BLAST of mRNA_M-pyrifera_M_contig84883.19778.1 vs. uniprot
Match: A0A835HK12_9MAGN (Uncharacterized protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835HK12_9MAGN)

HSP 1 Score: 131 bits (330), Expect = 2.400e-38
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 QQEEYTALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRN 198
            QQEEYTALREC+TLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLV AICEGRSSYIRN
Sbjct:   44 QQEEYTALRECVTLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVSAICEGRSSYIRN 109
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BLAST of mRNA_M-pyrifera_M_contig84883.19778.1 vs. uniprot
Match: A0A7T6Y6M7_9ROSI (30S ribosomal protein S2, chloroplastic n=4 Tax=Malpighiales TaxID=3646 RepID=A0A7T6Y6M7_9ROSI)

HSP 1 Score: 135 bits (340), Expect = 2.730e-38
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 QQEEYTALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRNS 201
            QQEEYTALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRN+
Sbjct:  170 QQEEYTALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRNA 236
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BLAST of mRNA_M-pyrifera_M_contig84883.19778.1 vs. uniprot
Match: RR2_SOYBN (30S ribosomal protein S2, chloroplastic n=54 Tax=Pentapetalae TaxID=1437201 RepID=RR2_SOYBN)

HSP 1 Score: 133 bits (335), Expect = 1.550e-37
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 QQEEYTALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRNS 201
            QQEEYTALRECITL IPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRNS
Sbjct:  170 QQEEYTALRECITLEIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRNS 236
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BLAST of mRNA_M-pyrifera_M_contig84883.19778.1 vs. uniprot
Match: A0A0M4MSJ2_LARTR (30S ribosomal protein S2, chloroplastic n=1 Tax=Larrea tridentata TaxID=66636 RepID=A0A0M4MSJ2_LARTR)

HSP 1 Score: 133 bits (335), Expect = 1.550e-37
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 QQEEYTALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRN 198
            QQEEYTALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLI NKLVFAICEGRSSYIRN
Sbjct:  170 QQEEYTALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLIFNKLVFAICEGRSSYIRN 235
[Close]
BLAST of mRNA_M-pyrifera_M_contig84883.19778.1 vs. uniprot
Match: A0A7S9H4L4_9ROSI (30S ribosomal protein S2, chloroplastic n=28 Tax=Malpighiales TaxID=3646 RepID=A0A7S9H4L4_9ROSI)

HSP 1 Score: 133 bits (335), Expect = 1.640e-37
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 QQEEYTALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRN 198
            QQEEYTALRECITLGIPTICLIDTNCDPDL DISIPANDDAIASIRLILNKLVFAICEGRSSYIRN
Sbjct:  172 QQEEYTALRECITLGIPTICLIDTNCDPDLTDISIPANDDAIASIRLILNKLVFAICEGRSSYIRN 237
[Close]
BLAST of mRNA_M-pyrifera_M_contig84883.19778.1 vs. uniprot
Match: K4K843_9ROSI (Rps2 (Fragment) n=1 Tax=Centroplacus glaucinus TaxID=289629 RepID=K4K843_9ROSI)

HSP 1 Score: 133 bits (335), Expect = 1.860e-37
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 QQEEYTALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRN 198
            QQEEYTALRECITLGIPTICLIDTNCDPDL DISIPANDDAIASIRLILNKLVFAICEGRSSYIRN
Sbjct:  177 QQEEYTALRECITLGIPTICLIDTNCDPDLTDISIPANDDAIASIRLILNKLVFAICEGRSSYIRN 242
[Close]
BLAST of mRNA_M-pyrifera_M_contig84883.19778.1 vs. uniprot
Match: A0A410P9V6_9ROSI (30S ribosomal protein S2, chloroplastic n=1 Tax=Commiphora foliacea TaxID=1173001 RepID=A0A410P9V6_9ROSI)

HSP 1 Score: 133 bits (334), Expect = 2.200e-37
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 QQEEYTALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRN 198
            QQEEYTALREC TLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRN
Sbjct:  170 QQEEYTALRECTTLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRN 235
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84883.19778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A434AE27_9BACT1.020e-3897.0130S ribosomal protein S2 n=4 Tax=cellular organism... [more]
B9RL72_RICCO1.340e-3896.9730S ribosomal protein S2, putative n=2 Tax=Ricinus... [more]
A0A822ZV14_NELNU1.870e-3895.45Uncharacterized protein n=1 Tax=Nelumbo nucifera T... [more]
A0A835HK12_9MAGN2.400e-3896.97Uncharacterized protein n=1 Tax=Coptis chinensis T... [more]
A0A7T6Y6M7_9ROSI2.730e-3898.5130S ribosomal protein S2, chloroplastic n=4 Tax=Ma... [more]
RR2_SOYBN1.550e-3798.5130S ribosomal protein S2, chloroplastic n=54 Tax=P... [more]
A0A0M4MSJ2_LARTR1.550e-3798.4830S ribosomal protein S2, chloroplastic n=1 Tax=La... [more]
A0A7S9H4L4_9ROSI1.640e-3798.4830S ribosomal protein S2, chloroplastic n=28 Tax=M... [more]
K4K843_9ROSI1.860e-3798.48Rps2 (Fragment) n=1 Tax=Centroplacus glaucinus Tax... [more]
A0A410P9V6_9ROSI2.200e-3798.4830S ribosomal protein S2, chloroplastic n=1 Tax=Co... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84883contigM-pyrifera_M_contig84883:3..206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue4.4e-29
Seed eggNOG ortholog3988.XP_002514491.1
Preferred namerps2
KEGG rclassRC02795
KEGG koko:K02108,ko:K02967,ko:K03046
KEGG TC3.A.2.1
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00190,ko00195,ko00230,ko00240,ko01100,ko03010,ko03020,map00190,map00195,map00230,map00240,map01100,map03010,map03020
KEGG ModuleM00157,M00178,M00179,M00183
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000314,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0031974,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0052@1,KOG0832@2759
EC2.7.7.6
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,br01611,ko00000,ko00001,ko00002,ko00194,ko01000,ko03011,ko03021,ko03110,ko03400
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816756.1267624-CDS-M-pyrifera_M_contig84883:2..2061622816756.1267624-CDS-M-pyrifera_M_contig84883:2..206Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84883 3..206 +
1692278159.6630063-CDS-M-pyrifera_M_contig84883:2..2061692278159.6630063-CDS-M-pyrifera_M_contig84883:2..206Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84883 3..206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84883.19778.1prot_M-pyrifera_M_contig84883.19778.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84883 3..206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84883.19778.1

>prot_M-pyrifera_M_contig84883.19778.1 ID=prot_M-pyrifera_M_contig84883.19778.1|Name=mRNA_M-pyrifera_M_contig84883.19778.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
QQEEYTALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILN
KLVFAICEGRSSYIRNS*
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mRNA from alignment at M-pyrifera_M_contig84883:3..206+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84883.19778.1 ID=mRNA_M-pyrifera_M_contig84883.19778.1|Name=mRNA_M-pyrifera_M_contig84883.19778.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig84883:3..206+ (Macrocystis pyrifera P11B4 male)
CAGCAAGAAGAATATACGGCACTTCGAGAATGTATCACTTTGGGAATTCC
AACGATTTGTTTAATCGATACAAATTGTGACCCGGATCTCGCAGATATTT
CGATTCCAGCGAATGATGACGCTATAGCTTCAATCCGATTAATTCTTAAC
AAATTAGTATTTGCAATTTGTGAGGGTCGTTCTAGCTATATACGAAATTC
TTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84883:3..206+

>mRNA_M-pyrifera_M_contig84883.19778.1 ID=mRNA_M-pyrifera_M_contig84883.19778.1|Name=mRNA_M-pyrifera_M_contig84883.19778.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig84883:3..206+ (Macrocystis pyrifera P11B4 male)
CAGCAAGAAGAATATACGGCACTTCGAGAATGTATCACTTTGGGAATTCC
AACGATTTGTTTAATCGATACAAATTGTGACCCGGATCTCGCAGATATTT
CGATTCCAGCGAATGATGACGCTATAGCTTCAATCCGATTAATTCTTAAC
AAATTAGTATTTGCAATTTGTGAGGGTCGTTCTAGCTATATACGAAATTC
TTGACAGCAAGAAGAATATACGGCACTTCGAGAATGTATCACTTTGGGAA
TTCCAACGATTTGTTTAATCGATACAAATTGTGACCCGGATCTCGCAGAT
ATTTCGATTCCAGCGAATGATGACGCTATAGCTTCAATCCGATTAATTCT
TAACAAATTAGTATTTGCAATTTGTGAGGGTCGTTCTAGCTATATACGAA
ATTCTTGA
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