mRNA_M-pyrifera_M_contig84875.19777.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84875.19777.1
Unique NamemRNA_M-pyrifera_M_contig84875.19777.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84875.19777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84875contigM-pyrifera_M_contig84875:45..512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_010650.1
Exons1
Model size468
Cds size447
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816756.0839198-UTR-M-pyrifera_M_contig84875:44..651622816756.0839198-UTR-M-pyrifera_M_contig84875:44..65Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84875 45..65 +
1692278159.6375916-UTR-M-pyrifera_M_contig84875:44..651692278159.6375916-UTR-M-pyrifera_M_contig84875:44..65Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84875 45..65 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816756.0948305-CDS-M-pyrifera_M_contig84875:65..5121622816756.0948305-CDS-M-pyrifera_M_contig84875:65..512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84875 66..512 +
1692278159.6495845-CDS-M-pyrifera_M_contig84875:65..5121692278159.6495845-CDS-M-pyrifera_M_contig84875:65..512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84875 66..512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84875.19777.1prot_M-pyrifera_M_contig84875.19777.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84875 66..512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84875.19777.1

>prot_M-pyrifera_M_contig84875.19777.1 ID=prot_M-pyrifera_M_contig84875.19777.1|Name=mRNA_M-pyrifera_M_contig84875.19777.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
MSRLAHSSTPTPPPLPAPPPPSLQQSKKKARKAVDALVATSKGVSKAKAK
KAKARVTAAAGEGGGGGGGGRGLQKLDAKSKRGEPRPGGKKQGAGPGGPK
QSAGNVKAKGFNIGIKGVNKNQQQQQAQAGKRSRKRGGGGGDGQGVAAQ
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mRNA from alignment at M-pyrifera_M_contig84875:45..512+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84875.19777.1 ID=mRNA_M-pyrifera_M_contig84875.19777.1|Name=mRNA_M-pyrifera_M_contig84875.19777.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig84875:45..512+ (Macrocystis pyrifera P11B4 male)
GAGCGTTGTGCGTCACTTGCGATGTCTCGGCTGGCGCATTCCTCCACACC
CACACCTCCGCCCCTCCCTGCACCCCCCCCCCCGTCCCTGCAGCAATCGA
AGAAGAAAGCGCGCAAAGCCGTGGACGCGCTAGTGGCGACCAGCAAGGGT
GTGAGCAAGGCCAAGGCTAAAAAGGCGAAGGCGAGGGTCACGGCGGCGGC
GGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGCTGCAGAAGTTGG
ACGCAAAGAGCAAGCGCGGGGAGCCGAGGCCTGGAGGAAAGAAGCAGGGC
GCCGGCCCGGGCGGACCCAAGCAGTCCGCGGGGAACGTCAAGGCTAAGGG
TTTTAACATCGGCATTAAGGGTGTCAACAAGAACCAGCAGCAGCAACAGG
CGCAAGCGGGGAAGCGCTCGAGAAAACGCGGCGGCGGAGGCGGGGATGGA
CAGGGAGTCGCTGCCCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84875:45..512+

>mRNA_M-pyrifera_M_contig84875.19777.1 ID=mRNA_M-pyrifera_M_contig84875.19777.1|Name=mRNA_M-pyrifera_M_contig84875.19777.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig84875:45..512+ (Macrocystis pyrifera P11B4 male)
ATGTCTCGGCTGGCGCATTCCTCCACACCCACACCTCCGCCCCTCCCTGC
ACCCCCCCCCCCGTCCCTGCAGCAATCGAAGAAGAAAGCGCGCAAAGCCG
TGGACGCGCTAGTGGCGACCAGCAAGGGTGTGAGCAAGGCCAAGGCTAAA
AAGGCGAAGGCGAGGGTCACGGCGGCGGCGGGGGAGGGGGGGGGGGGGGG
GGGGGGGGGGCGGGGGCTGCAGAAGTTGGACGCAAAGAGCAAGCGCGGGG
AGCCGAGGCCTGGAGGAAAGAAGCAGGGCGCCGGCCCGGGCGGACCCAAG
CAGTCCGCGGGGAACGTCAAGGCTAAGGGTTTTAACATCGGCATTAAGGG
TGTCAACAAGAACCAGCAGCAGCAACAGGCGCAAGCGGGGAAGCGCTCGA
GAAAACGCGGCGGCGGAGGCGGGGATGGACAGGGAGTCGCTGCCCAGATG
TCTCGGCTGGCGCATTCCTCCACACCCACACCTCCGCCCCTCCCTGCACC
CCCCCCCCCGTCCCTGCAGCAATCGAAGAAGAAAGCGCGCAAAGCCGTGG
ACGCGCTAGTGGCGACCAGCAAGGGTGTGAGCAAGGCCAAGGCTAAAAAG
GCGAAGGCGAGGGTCACGGCGGCGGCGGGGGAGGGGGGGGGGGGGGGGGG
GGGGGGGCGGGGGCTGCAGAAGTTGGACGCAAAGAGCAAGCGCGGGGAGC
CGAGGCCTGGAGGAAAGAAGCAGGGCGCCGGCCCGGGCGGACCCAAGCAG
TCCGCGGGGAACGTCAAGGCTAAGGGTTTTAACATCGGCATTAAGGGTGT
CAACAAGAACCAGCAGCAGCAACAGGCGCAAGCGGGGAAGCGCTCGAGAA
AACGCGGCGGCGGAGGCGGGGATGGACAGGGAGTCGCTGCCCAG
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