mRNA_M-pyrifera_M_contig8485.19775.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig8485.19775.1 vs. uniprot
Match: D7FI24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI24_ECTSI) HSP 1 Score: 309 bits (791), Expect = 1.100e-85 Identity = 235/480 (48.96%), Postives = 267/480 (55.62%), Query Frame = 1 Query: 1462 GRRPATREAVRQLHESERMHRLGFSLTKKRESARRRRDDLQEAREAVSCSGRLNLCSKTRELTDNLPKYTYYRRGDNDETGPDGSRWVGGGSY------------------------------------RDAGDRLYSEWKAARR--------SSARREKSEATRGEVSPEGWSCPICSGDNRAQDSVCQRVTGIAVAAQALRPDTWCRESTDKLGRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------AGRVGSDGLRRCGRPRPEMFKPTAVARPV-DGVIDRRRKGEPLFDNLYRNPPTPSRRRAKRALDADIKASCTFTPAINTQSRRLADAQETRRMIADAAR-DSVSGGGNSCCDSSGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVCRGMARSARLHAEHAEIGQRKEERRKELLSQSCPFKPDIGISATWPTLHTSTEDFVR 2706 GRRPA+REA RQL SERMHRLG ++ K++ +CSGRLNLCSKTRELTDN PKY Y R TG G+ R AGDRLYSEW A+R+ + A A+R SPEGW+CP C DNRAQD CQ TG+AVAAQ LRPDTWCRES + LGR A XXXXXXXXXXXXXXXXXXXXXXXXXXX + RVG DG+RRCGR RPEMF+PT VARP DG + R KGE LFDNLYRNPPTPSRRRAK+ L AD +A+CTF P IN SRRLA+AQE RR + + R S S G + G XX A + + +S RLHAEHA+ QR+E RRKELLSQSCPF PDIG+SA WP T+TEDFVR Sbjct: 359 GRRPASREAARQLRVSERMHRLGRAMAKRKXXXXXXXXXXXXXXXXXACSGRLNLCSKTRELTDNQPKYVYRR-----PTGRSGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGAGDRLYSEWMASRKRNASLLAKTKAAXXXXXASRENASPEGWTCPECGADNRAQDDTCQTFTGLAVAAQDLRPDTWCRESPEALGRVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSGSRRVGEDGVRRCGRRRPEMFRPTPVARPSGDGAVRARPKGELLFDNLYRNPPTPSRRRAKQVLQADTRATCTFAPEINECSRRLAEAQEARRDLLEFVRAGSESDGRGGGAEGKG--------------------GSKREDTEAAATRAGXXAGAARSKVIVKSHRLHAEHADNEQRRERRRKELLSQSCPFTPDIGVSAAWPIQETTTEDFVR 813
BLAST of mRNA_M-pyrifera_M_contig8485.19775.1 vs. uniprot
Match: A0A6H5JGR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGR6_9PHAE) HSP 1 Score: 205 bits (522), Expect = 3.780e-51 Identity = 171/345 (49.57%), Postives = 196/345 (56.81%), Query Frame = 1 Query: 1747 AGDRLYSEWKAARRSSA----RREKSEATRGEVSPEGWSCPICSGDNRAQDSVCQRVTGIAVAAQALRPDTWCRESTDKLGRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAG-------------------RVGSDGLRRCGRPRPEMFKPTAVARPVD-GVIDRRRKGEPLFDNLYRNPPTPSRRRAKRALDADIKASCTFTPAINTQSRRLADAQETRRMIADAARDSVSGGGNSCCDSSGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVCRGMARSARLHAEHAEIGQRKEERRKELLSQSCPFKPDIGISATWPTLHTSTEDFVRQ 2709 AGDRLYSEW A R+ +A + + + A R + SPEGW+CP C NRAQD CQ TG+AVAAQ LRPDTWCRES + LGR A XXXXXXXXXXXXX RVG DG+RRCGR RPEMF+PT VARP+D GV+ R KGE A+CTF P IN SRRLA+A+E RR + D R S D SG XXXXXXXXXXXX XXXXXXX A + M +S RLHA+HA+I QR+E RRKELLSQSCPF PDIG+SA WP T+ EDFVR+ Sbjct: 654 AGDRLYSEWMATRKRNASLLAKAKSAAAEREDASPEGWTCPECGAGNRAQDDTCQTFTGLAVAAQDLRPDTWCRESPEALGRVAATASXXXXXXXXXXXXXRSTAVKPGGATGDQRGPESRRRYGXXXSSDSRRVGEDGVRRCGRRRPEMFRPTPVARPLDHGVVRARPKGE---------------------------ATCTFAPEINELSRRLAEAREARRDLLDFVR------AGSESDGSG------------XXXXXXXXXXXXRKDTPAAXXXXXXXGAARSKIMVKSYRLHADHADIEQRRERRRKELLSQSCPFTPDIGVSAAWPIQETTKEDFVRR 953 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8485.19775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig8485.19775.1 >prot_M-pyrifera_M_contig8485.19775.1 ID=prot_M-pyrifera_M_contig8485.19775.1|Name=mRNA_M-pyrifera_M_contig8485.19775.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=906bp KRGRLLLIIDVQSNRGAVEEVHVRTGDSAFLLARGFVARHGLDVQHVGAVback to top mRNA from alignment at M-pyrifera_M_contig8485:1449..8997+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig8485.19775.1 ID=mRNA_M-pyrifera_M_contig8485.19775.1|Name=mRNA_M-pyrifera_M_contig8485.19775.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=7549bp|location=Sequence derived from alignment at M-pyrifera_M_contig8485:1449..8997+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig8485:1449..8997+ >mRNA_M-pyrifera_M_contig8485.19775.1 ID=mRNA_M-pyrifera_M_contig8485.19775.1|Name=mRNA_M-pyrifera_M_contig8485.19775.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=5436bp|location=Sequence derived from alignment at M-pyrifera_M_contig8485:1449..8997+ (Macrocystis pyrifera P11B4 male)back to top |