mRNA_M-pyrifera_M_contig84841.19769.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84841.19769.1
Unique NamemRNA_M-pyrifera_M_contig84841.19769.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84841.19769.1 vs. uniprot
Match: A0A7S1CFC2_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CFC2_9STRA)

HSP 1 Score: 140 bits (352), Expect = 2.730e-38
Identity = 69/113 (61.06%), Postives = 82/113 (72.57%), Query Frame = 1
Query:    7 RKKEDPWKKTLVGGAVTVVFEALAGGHALEFAKIAKQTSHDSYGTIFRRMVEHKGISGVLDGFFPWGALQALTKGAAFSFGQSAAMAVLDKNKVLPDRATIILSGGIGGAIQG 345
            +K E PW KTL+GG+VTVVFEA  GGH LEF KIAKQTS  SY  I R +  HKGI+GVLDGF PWGA Q++TKGA FS+G + A   +  N  L + AT +LSGGIGG +QG
Sbjct:   38 QKPEKPWAKTLIGGSVTVVFEAFGGGHFLEFCKIAKQTSTRSYPQIVRDVTRHKGIAGVLDGFLPWGAAQSITKGAVFSWGHATAKKTMHGNSYLSEDATEVLSGGIGGGVQG 150          
BLAST of mRNA_M-pyrifera_M_contig84841.19769.1 vs. uniprot
Match: A0A5A8CLL9_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CLL9_CAFRO)

HSP 1 Score: 140 bits (353), Expect = 7.350e-38
Identity = 71/113 (62.83%), Postives = 83/113 (73.45%), Query Frame = 1
Query:    7 RKKEDPWKKTLVGGAVTVVFEALAGGHALEFAKIAKQTSHDSYGTIFRRMVEHKGISGVLDGFFPWGALQALTKGAAFSFGQSAAMAVLDKNKVLPDRATIILSGGIGGAIQG 345
            ++ E P  K L+GG VTV FEA AGGH LEF KIAKQTS DSY TI RR+   KG+ G LDGF PWG LQ L KGA FSFGQ+ AMA+L  N VL  +AT++L+GGIGG +QG
Sbjct:  103 KEVESPVAKFLIGGGVTVFFEAFAGGHFLEFLKIAKQTSTDSYATIARRITAEKGLMGTLDGFMPWGLLQCLVKGAVFSFGQAQAMALLHDNTVLGSQATMVLTGGIGGFVQG 215          
BLAST of mRNA_M-pyrifera_M_contig84841.19769.1 vs. uniprot
Match: X6MVB8_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6MVB8_RETFI)

HSP 1 Score: 118 bits (296), Expect = 4.280e-30
Identity = 60/117 (51.28%), Postives = 82/117 (70.09%), Query Frame = 1
Query:    7 RKKEDPWKKTLVGGAVTVVFEALAGGHALEFAKIAKQTSHDSYGTIFRRMVEHKGISGVLDGFFPWGALQALTKGAAFSFGQSAAMAVLDKNKVLPDRATI----ILSGGIGGAIQG 345
            +K E+P+ K  + G VT+ FEAL GGH  E  KI KQT+++SY TI +RM+ +KGI G+LDGF PWGALQA  KG++F FG++AA  +L++  + PD        ILSGG+GG +QG
Sbjct:    5 KKTENPFAKLFISGGVTIFFEALGGGHYFEMVKILKQTTNNSYATITKRMIANKGIVGILDGFVPWGALQASIKGSSFGFGEAAAKRLLER--IAPDSVPKWQREILSGGMGGFVQG 119          
BLAST of mRNA_M-pyrifera_M_contig84841.19769.1 vs. uniprot
Match: X6LH61_RETFI (Uncharacterized protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6LH61_RETFI)

HSP 1 Score: 115 bits (289), Expect = 1.300e-29
Identity = 57/112 (50.89%), Postives = 80/112 (71.43%), Query Frame = 1
Query:   16 EDPWKKTLVGGAVTVVFEALAGGHALEFAKIAKQTSHDSYGTIFRRMVEHKGISGVLDGFFPWGALQALTKGAAFSFGQSAAMAVLDKN--KVLPDRATIILSGGIGGAIQG 345
            E+P  K  + G VT++FEA+ GGH  E  KI KQT++DSY TI +RM+ +KGI G+LDGF PWGALQA  KG++F FG++AA  +L+++  + +      ILSGG+GG +QG
Sbjct:   92 ENPIAKLFISGTVTILFEAVGGGHYFEMVKILKQTTNDSYATITKRMIANKGIVGILDGFVPWGALQASIKGSSFGFGEAAAKRILERSASEKMTKWQRDILSGGMGGFVQG 203          
BLAST of mRNA_M-pyrifera_M_contig84841.19769.1 vs. uniprot
Match: A0A024UQ68_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQ68_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.050e-22
Identity = 57/119 (47.90%), Postives = 74/119 (62.18%), Query Frame = 1
Query:    1 PPRKKEDPWKKTLVGGAVTVVFEALAGGHALEFAKIAKQT-SHDSYGTIFRRMVEHKGISGVLDGFFPWGALQALTKGAAFSFGQS---AAMAVLDKNKVLPDRATIILSGGIGGAIQG 345
            P +K ++P  K  +G  V   +E  A GH LEF K+ KQT SH SY  + R +   KGI G+ DGFFPWG +QAL KG+ FS+GQ+   A ++ L K   L DR   I+SGG+GG IQG
Sbjct:   20 PGKKMQNPQVKFFIGAGVGWTYE-FAAGHFLEFIKVMKQTQSHKSYLELARDITRSKGIVGIWDGFFPWGTVQALAKGSVFSWGQAFSRAQLSPLVKQGYLSDRMAEIMSGGLGGGIQG 137          
BLAST of mRNA_M-pyrifera_M_contig84841.19769.1 vs. uniprot
Match: W4HES0_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HES0_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.080e-21
Identity = 55/119 (46.22%), Postives = 74/119 (62.18%), Query Frame = 1
Query:    1 PPRKKEDPWKKTLVGGAVTVVFEALAGGHALEFAKIAKQT-SHDSYGTIFRRMVEHKGISGVLDGFFPWGALQALTKGAAFSFGQS---AAMAVLDKNKVLPDRATIILSGGIGGAIQG 345
            P +K ++P  K  +G  V   +E  A GH LEF K+ KQT SH SY  + R +   KGI G+ DGFFPWG +QAL KG+ FS+GQ+   A ++ L K   + DR   I+SGG+GG +QG
Sbjct:   18 PVKKMQNPQVKFFIGAGVGWTYE-FATGHFLEFIKVMKQTQSHKSYLELTRDITRAKGIIGIWDGFFPWGTVQALAKGSVFSWGQAFSRAQLSPLVKQGHISDRTAEIMSGGLGGGVQG 135          
BLAST of mRNA_M-pyrifera_M_contig84841.19769.1 vs. uniprot
Match: A0A8K1C929_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C929_PYTOL)

HSP 1 Score: 94.4 bits (233), Expect = 1.160e-20
Identity = 53/116 (45.69%), Postives = 72/116 (62.07%), Query Frame = 1
Query:   10 KKEDPWKKTLVGGAVTVVFEALAGGHALEFAKIAKQTSH-DSYGTIFRRMVEHKGISGVLDGFFPWGALQALTKGAAFSFGQSAA---MAVLDKNKVLPDRATIILSGGIGGAIQG 345
            K E P  K ++G  VT+VFE + G H  EF KI KQT   +SY T+ R +V+ KGI G+ DGFFPWGA+QA+ KGA F++  +     +  L +N  L   A  +++GGIGG  QG
Sbjct:   55 KAERPGVKLVIGAGVTLVFEFMFG-HCFEFTKIMKQTRPTESYATLTREIVQAKGIVGIWDGFFPWGAIQAVAKGAVFAWAHALTKKNVQPLVENGTLSQNAAEVMAGGIGGGFQG 169          
BLAST of mRNA_M-pyrifera_M_contig84841.19769.1 vs. uniprot
Match: A0A2D4BV70_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BV70_PYTIN)

HSP 1 Score: 91.7 bits (226), Expect = 9.980e-20
Identity = 55/117 (47.01%), Postives = 72/117 (61.54%), Query Frame = 1
Query:   10 KKEDPWKKTLVGGAVTVVFEALAGGHALEFAKIAKQTSH-DSYGTIFRRMVEHKGISGVLDGFFPWGALQALTKGAAFSFGQSAAMAVL----DKNKVLPDRATIILSGGIGGAIQG 345
            K E P  K ++G  VTVV+E  A GH LEF KI KQT   +SY T+ R +V  KGI G+ DGFFPWGA+Q + KGA F++G +     L    D  K+  + A +I +GG+GG  QG
Sbjct:   38 KSERPGVKLVIGAGVTVVYE-FALGHFLEFIKIMKQTRPTESYATLAREIVHSKGIVGIWDGFFPWGAIQGVAKGAVFAWGHALTKQTLQPFVDDGKLRRNVAEVI-AGGMGGGFQG 152          
BLAST of mRNA_M-pyrifera_M_contig84841.19769.1 vs. uniprot
Match: A0A485LI60_9STRA (Aste57867_21679 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LI60_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.650e-18
Identity = 51/116 (43.97%), Postives = 69/116 (59.48%), Query Frame = 1
Query:   10 KKEDPWKKTLVGGAVTVVFEALAGGHALEFAKIAKQTS-HDSYGTIFRRMVEHKGISGVLDGFFPWGALQALTKGAAFSFGQSAAMAVLD---KNKVLPDRATIILSGGIGGAIQG 345
            K ++P  K  +G  V + +E  A GH LEF KI KQT    +Y  + R +   KGI G+ DGFFPWG +QAL KG+ FS+GQ+ +   L    K   L DR   ++SGG+GG +QG
Sbjct:   25 KMQNPQAKFFIGAGVGLTYE-FALGHFLEFIKIMKQTQPQKTYLELARDITRSKGIVGIWDGFFPWGTVQALAKGSVFSWGQAFSRQQLGPFVKQGYLSDRTAEVVSGGLGGGVQG 139          
BLAST of mRNA_M-pyrifera_M_contig84841.19769.1 vs. uniprot
Match: A0A0P1ALJ3_PLAHL (Mitochondrial dna replication protein yhm2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ALJ3_PLAHL)

HSP 1 Score: 85.9 bits (211), Expect = 1.500e-17
Identity = 48/109 (44.04%), Postives = 66/109 (60.55%), Query Frame = 1
Query:   31 KTLVGGAVTVVFEALAGGHALEFAKIAKQTSHD-SYGTIFRRMVEHKGISGVLDGFFPWGALQALTKGAAFSFGQSAAMAVLD---KNKVLPDRATIILSGGIGGAIQG 345
            K LVG  V +++E  A GH LEF KI KQT    SY  + + ++  KG+ G+ DGFFPWGALQ + KG+ F++G S A   L    K K +    + +++GGIGG  QG
Sbjct:   55 KLLVGAGVCLIYE-FALGHYLEFIKIMKQTKPQYSYAHLTKEIMHAKGLVGIWDGFFPWGALQGVAKGSVFAWGHSVARTALTPMVKKKKISSGTSEVIAGGIGGGFQG 162          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84841.19769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A7S1CFC2_9STRA2.730e-3861.06Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A5A8CLL9_CAFRO7.350e-3862.83Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
X6MVB8_RETFI4.280e-3051.28Uncharacterized protein n=1 Tax=Reticulomyxa filos... [more]
X6LH61_RETFI1.300e-2950.89Uncharacterized protein (Fragment) n=1 Tax=Reticul... [more]
A0A024UQ68_9STRA2.050e-2247.90Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
W4HES0_9STRA2.080e-2146.22Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A8K1C929_PYTOL1.160e-2045.69Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BV70_PYTIN9.980e-2047.01Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A485LI60_9STRA1.650e-1843.97Aste57867_21679 protein n=1 Tax=Aphanomyces stella... [more]
A0A0P1ALJ3_PLAHL1.500e-1744.04Mitochondrial dna replication protein yhm2 n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84841contigM-pyrifera_M_contig84841:3..714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue3.1e-19
Seed eggNOG ortholog157072.XP_008862209.1
KEGG koko:K15100
KEGG TC2.A.29.7
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005310,GO:0005342,GO:0005469,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0006839,GO:0006855,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015138,GO:0015141,GO:0015238,GO:0015291,GO:0015297,GO:0015318,GO:0015556,GO:0015711,GO:0015740,GO:0015741,GO:0015744,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071422,GO:0071702,GO:0098656,GO:1903825,GO:1905039
EggNOG free text desc.mitochondrial tricarboxylic acid transmembrane transport
EggNOG OGsKOG0756@1,KOG0756@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons2
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816755.5621684-CDS-M-pyrifera_M_contig84841:2..2421622816755.5621684-CDS-M-pyrifera_M_contig84841:2..242Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84841 3..242 -
1692278159.2927067-CDS-M-pyrifera_M_contig84841:2..2421692278159.2927067-CDS-M-pyrifera_M_contig84841:2..242Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84841 3..242 -
1622816755.5731208-CDS-M-pyrifera_M_contig84841:609..7141622816755.5731208-CDS-M-pyrifera_M_contig84841:609..714Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84841 610..714 -
1692278159.3046727-CDS-M-pyrifera_M_contig84841:609..7141692278159.3046727-CDS-M-pyrifera_M_contig84841:609..714Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84841 610..714 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84841.19769.1prot_M-pyrifera_M_contig84841.19769.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84841 3..714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84841.19769.1

>prot_M-pyrifera_M_contig84841.19769.1 ID=prot_M-pyrifera_M_contig84841.19769.1|Name=mRNA_M-pyrifera_M_contig84841.19769.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
PPRKKEDPWKKTLVGGAVTVVFEALAGGHALEFAKIAKQTSHDSYGTIFR
RMVEHKGISGVLDGFFPWGALQALTKGAAFSFGQSAAMAVLDKNKVLPDR
ATIILSGGIGGAIQG
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mRNA from alignment at M-pyrifera_M_contig84841:3..714-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84841.19769.1 ID=mRNA_M-pyrifera_M_contig84841.19769.1|Name=mRNA_M-pyrifera_M_contig84841.19769.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=712bp|location=Sequence derived from alignment at M-pyrifera_M_contig84841:3..714- (Macrocystis pyrifera P11B4 male)
CCACCCCGCAAGAAGGAAGATCCTTGGAAGAAAACCCTGGTGGGGGGAGC TGTCACTGTAGTCTTTGAAGCACTTGCTGGTGGCCATGCCCTTGAGTTCG CGAAGGTATGGCGAAATTTCACCCTTTTCCCTTCTCCTTTCATGCACATT TCTCCCATTTTCACATCCTTCATCATTATACCCTACCCGAACTTTATCCT TCTTCTTCTCACCCCTCCTGGAATATGGGTTTTGGCTGAAGGGGCATGGG AGATGAGGGGTTTGGGGGAACGATGGGTGCAAGTGGAGGTGTGAGAGAGG AGGCTGTGGTGTGATTGGGTTAGGAGGGGTGTTGGGTGTGGGTTTGGATG GCCGGAGGAGGTGGAAATTTGGGCGGAGACTGAAATGCGCCTGTGTGGAA GACGTTTGGGGGCTTTTTGTGGATTGTTGTTGGAATGATCCCATTTATAT GTATTCGTCTTCTCTTTTGCAGATTGCGAAACAGACGAGCCATGATAGTT ATGGCACTATTTTCCGTCGCATGGTGGAGCACAAGGGCATTTCCGGAGTA TTGGACGGCTTTTTCCCTTGGGGTGCGCTGCAAGCCCTGACCAAAGGTGC GGCCTTCTCGTTCGGTCAATCTGCAGCCATGGCAGTGCTCGACAAGAACA AAGTACTCCCTGACCGGGCCACCATCATCCTCTCTGGAGGCATCGGAGGT GCCATCCAAGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84841:3..714-

>mRNA_M-pyrifera_M_contig84841.19769.1 ID=mRNA_M-pyrifera_M_contig84841.19769.1|Name=mRNA_M-pyrifera_M_contig84841.19769.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig84841:3..714- (Macrocystis pyrifera P11B4 male)
CCACCCCGCAAGAAGGAAGATCCTTGGAAGAAAACCCTGGTGGGGGGAGC
TGTCACTGTAGTCTTTGAAGCACTTGCTGGTGGCCATGCCCTTGAGTTCG
CGAAGCCACCCCGCAAGAAGGAAGATCCTTGGAAGAAAACCCTGGTGGGG
GGAGCTGTCACTGTAGTCTTTGAAGCACTTGCTGGTGGCCATGCCCTTGA
GTTCGCGAAGATTGCGAAACAGACGAGCCATGATAGTTATGGCACTATTT
TCCGTCGCATGGTGGAGCACAAGGGCATTTCCGGAGTATTGGACGGCTTT
TTCCCTTGGGGTGCGCTGCAAGCCCTGACCAAAGGTGCGGCCTTCTCGTT
CGGTCAATCTGCAGCCATGGCAGTGCTCGACAAGAACAAAGTACTCCCTG
ACCGGGCCACCATCATCCTCTCTGGAGGCATCGGAGGTGCCATCCAAGGC
ATTGCGAAACAGACGAGCCATGATAGTTATGGCACTATTTTCCGTCGCAT
GGTGGAGCACAAGGGCATTTCCGGAGTATTGGACGGCTTTTTCCCTTGGG
GTGCGCTGCAAGCCCTGACCAAAGGTGCGGCCTTCTCGTTCGGTCAATCT
GCAGCCATGGCAGTGCTCGACAAGAACAAAGTACTCCCTGACCGGGCCAC
CATCATCCTCTCTGGAGGCATCGGAGGTGCCATCCAAGGC
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