mRNA_M-pyrifera_M_contig84830.19765.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84830.19765.1
Unique NamemRNA_M-pyrifera_M_contig84830.19765.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84830.19765.1 vs. uniprot
Match: A0A7S2CC74_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CC74_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.600e-14
Identity = 48/126 (38.10%), Postives = 64/126 (50.79%), Query Frame = 1
Query:   52 GMGKCVVAARALEAGTVV--GAFEKTEKSLMATPTQHTLQFAEGVHVATESSMRYLAHSSSPNA--RLVADKEIPGEVTTIQVVLMADVREGDVISFDYRTSEWDMSTPFVEKGSGVEIRGFKHAP 417
            G+G   +A R ++ G V+   A   T+K     PT H++Q     HVA     RY AHS  PN   ++  D   P     I  V   D+ EG+ ISFDY T+EWDM  PF +  +G   +GFKH P
Sbjct:   63 GLGVKSIATRNVKRGEVIFHEAGPSTDK-----PTMHSIQVGVDKHVAIMGEGRYTAHSFEPNTLVKIYEDSSHP-----IDFVAARDIEEGEQISFDYTTTEWDMGAPFTDAVTGKTCQGFKHLP 178          
BLAST of mRNA_M-pyrifera_M_contig84830.19765.1 vs. uniprot
Match: A0A836G626_9TRYP (Uncharacterized protein n=1 Tax=Leishmania martiniquensis TaxID=1580590 RepID=A0A836G626_9TRYP)

HSP 1 Score: 75.5 bits (184), Expect = 4.300e-13
Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = 1
Query:   37 VREVEGMGKCVVAARALEAGTVVGAFEKTEKSLMATPTQHTLQFAEGVHVATESSMRYLAHSSSPNARLVADKEIPGEVTTIQVVLMADVREGDVISFDYRTSEWDMSTPF 369
            V+   GMG+   AAR +  GT    F K    ++  PT +T+Q   G H+      + LAHS +PN R++ D     E  ++  + + D+ EG+VI+F+Y T+EWDMSTPF
Sbjct:  746 VKRSGGMGQATFAARRIPRGT---RFLKVNGLVLPFPTVYTIQLERGRHLQFAEGAQCLAHSCTPNVRIMVD----AEGRSLDCLALRDIEEGEVIAFNYLTTEWDMSTPF 849          
BLAST of mRNA_M-pyrifera_M_contig84830.19765.1 vs. uniprot
Match: A0A0N1PEJ5_LEPSE (Uncharacterized protein n=1 Tax=Leptomonas seymouri TaxID=5684 RepID=A0A0N1PEJ5_LEPSE)

HSP 1 Score: 74.3 bits (181), Expect = 1.090e-12
Identity = 47/133 (35.34%), Postives = 70/133 (52.63%), Query Frame = 1
Query:   34 DVREVEGMGKCVVAARALEAGTVVGAFEKTEKSLMATPTQHTLQFAEGVHVATESSMRYLAHSSSPNARLVADKEIPGEVTTIQVVLMADVREGDVISFDYRTSEWDMSTPFVEKGSGVE-----IRGFKHAP 417
            +VR    MG+   AAR++  GT    F K    ++  PT +T+Q     H+      + LAHS +PN R++ D     E  ++  + + D++EG+VI+F+Y T+EWDMSTPF      VE     I G K  P
Sbjct:  742 EVRANGAMGQATFAARSIPKGT---RFLKVNGLVLPFPTVYTIQLGRDRHLQFADGAQCLAHSCAPNVRIMID----AESRSLYCLALRDIQEGEVIAFNYLTTEWDMSTPFYCLCGDVETCYRRIHGLKFQP 867          
BLAST of mRNA_M-pyrifera_M_contig84830.19765.1 vs. uniprot
Match: A0A0S4JQX1_BODSA (Uncharacterized protein n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4JQX1_BODSA)

HSP 1 Score: 73.9 bits (180), Expect = 1.430e-12
Identity = 46/135 (34.07%), Postives = 74/135 (54.81%), Query Frame = 1
Query:   19 SSGTTDVREVEGMGKCVVAARALEAGTVVGAFEKTEKSLMATPTQHTLQFAEGVHVATESSMRYLAHSSSPNARLVADKEIPGEVTTIQVVLMADVREGDVISFDYRTSEWDMSTPF-VEKGSGV---EIRGFKH 411
            SS    VR+   MG+   AA+++  GT    F +T   ++  PT +T+  AE  H+      + LAH+  PN R+V D       ++ + V + D+ +G++I+F+Y T+EWDM+TPF    G+      IRGF+H
Sbjct:  189 SSSYVTVRDNGAMGQATFAAKSIVKGT---RFFRTTGLVIPFPTVYTILLAENKHLLFAGGAQCLAHACDPNVRIVVDPSS----SSFECVALRDIADGELIAFNYLTTEWDMNTPFPCVCGTSTCFRNIRGFRH 316          
BLAST of mRNA_M-pyrifera_M_contig84830.19765.1 vs. uniprot
Match: A0A0M9GAW2_9TRYP (Uncharacterized protein n=1 Tax=Leptomonas pyrrhocoris TaxID=157538 RepID=A0A0M9GAW2_9TRYP)

HSP 1 Score: 72.0 bits (175), Expect = 6.950e-12
Identity = 45/133 (33.83%), Postives = 68/133 (51.13%), Query Frame = 1
Query:   34 DVREVEGMGKCVVAARALEAGTVVGAFEKTEKSLMATPTQHTLQFAEGVHVATESSMRYLAHSSSPNARLVADKEIPGEVTTIQVVLMADVREGDVISFDYRTSEWDMSTPFV-----EKGSGVEIRGFKHAP 417
            +VR    MG+   AAR +  GT    F +    ++  PT +T+Q     H+      + LAHS  PN R++ D     E  ++  + + D+ EG+VI+F+Y T+EW+MSTPF      EK     I G K+ P
Sbjct:  739 EVRANGAMGQATFAARTIPKGT---RFLRVSGLVLPFPTVYTIQLDRNRHLQFADGAQCLAHSCVPNVRIMID----AESRSLDCLALRDIHEGEVIAFNYLTTEWNMSTPFCCLCGDEKSCYRRIHGLKYQP 864          
BLAST of mRNA_M-pyrifera_M_contig84830.19765.1 vs. uniprot
Match: A0A7G2CCW9_9TRYP (SET domain containing protein, putative n=1 Tax=Angomonas deanei TaxID=59799 RepID=A0A7G2CCW9_9TRYP)

HSP 1 Score: 71.6 bits (174), Expect = 9.470e-12
Identity = 40/117 (34.19%), Postives = 64/117 (54.70%), Query Frame = 1
Query:   19 SSGTTDVREVEGMGKCVVAARALEAGTVVGAFEKTEKSLMATPTQHTLQFAEGVHVATESSMRYLAHSSSPNARLVADKEIPGEVTTIQVVLMADVREGDVISFDYRTSEWDMSTPF 369
            SS   DVR+  GMG+   + R +  GT    F      ++  PT +T+    G H+      + LAHS +PN R++ D E      ++  + + D+ EG++ISF+Y T+EWDM++PF
Sbjct:  716 SSPLVDVRDNGGMGQATFSTRNIAKGT---RFFNVHGLVLPFPTVYTIMLDRGRHLLFADGAQCLAHSCNPNVRIIVDPE----GRSLDCLALRDINEGELISFNYLTTEWDMNSPF 825          
BLAST of mRNA_M-pyrifera_M_contig84830.19765.1 vs. uniprot
Match: S9TLL9_9TRYP (Uncharacterized protein n=1 Tax=Strigomonas culicis TaxID=28005 RepID=S9TLL9_9TRYP)

HSP 1 Score: 71.2 bits (173), Expect = 1.250e-11
Identity = 45/129 (34.88%), Postives = 67/129 (51.94%), Query Frame = 1
Query:   37 VREVEGMGKCVVAARALEAGTVVGAFEKTEKSLMATPTQHTLQFAEGVHVATESSMRYLAHSSSPNARLVADKEIPGEVTTIQVVLMADVREGDVISFDYRTSEWDMSTPFV----EKGSGVEIRGFKH 411
            VR    MG+   AAR ++AGT    F +    ++  PT +T+  A   H+      + LAHS  PN R++ D+E      T+  + +  +R G++ISF+Y  +EWDM  PF       G   +IRGFKH
Sbjct:  652 VRANGAMGQATFAARDIQAGT---RFLRVTGLVLPFPTVYTIMLAPTRHLLFAGGAQCLAHSCDPNVRIMVDREN----NTLDCLALRPIRSGELISFNYLCTEWDMDCPFKCVCQAPGCYGKIRGFKH 773          
BLAST of mRNA_M-pyrifera_M_contig84830.19765.1 vs. uniprot
Match: G0UUB1_TRYCI (Uncharacterized protein TCIL3000_9_3750 (Fragment) n=1 Tax=Trypanosoma congolense (strain IL3000) TaxID=1068625 RepID=G0UUB1_TRYCI)

HSP 1 Score: 70.5 bits (171), Expect = 2.300e-11
Identity = 45/140 (32.14%), Postives = 70/140 (50.00%), Query Frame = 1
Query:    4 LAVVMSSGTTDVREVEGMGKCVVAARALEAGTVVGAFEKTEKSLMATPTQHTLQFAEGVHVATESSMRYLAHSSSPNARLVADKEIPGEVTTIQVVLMADVREGDVISFDYRTSEWDMSTPF-VEKGSGV---EIRGFKH 411
            L +  +S   +VRE + MG+   A   +  GT    F      ++   T HT+  ++  H+       +L HS  PN R++ D         ++ + + D++EG++ISF+Y T+EWDM  PF    GS     EIRGFKH
Sbjct:  144 LCIRSTSPLVEVREDKRMGQSTFAKTNISKGT---RFFGVSGLILPFATMHTIHLSDKKHLLFGDGAEFLTHSCDPNTRILTDSA----AAKVECIALRDIKEGELISFNYLTTEWDMQYPFSCACGSPKCYGEIRGFKH 276          
BLAST of mRNA_M-pyrifera_M_contig84830.19765.1 vs. uniprot
Match: A0A836KAL3_9TRYP (Uncharacterized protein n=4 Tax=Mundinia TaxID=2249475 RepID=A0A836KAL3_9TRYP)

HSP 1 Score: 70.5 bits (171), Expect = 2.400e-11
Identity = 40/111 (36.04%), Postives = 63/111 (56.76%), Query Frame = 1
Query:   37 VREVEGMGKCVVAARALEAGTVVGAFEKTEKSLMATPTQHTLQFAEGVHVATESSMRYLAHSSSPNARLVADKEIPGEVTTIQVVLMADVREGDVISFDYRTSEWDMSTPF 369
            VR    MG+   AAR +  GT    F K    ++  PT +T+Q   G H+      + LAHS +PN R++ D E      ++  + + D++EG++I+F+Y T+EWD+STPF
Sbjct:  746 VRASGEMGQATFAARRIPKGT---RFFKVNGLVLPFPTLYTIQLERGRHLQFADGAQCLAHSCTPNVRIMIDVES----RSLDCLALRDIQEGELIAFNYLTTEWDLSTPF 849          
BLAST of mRNA_M-pyrifera_M_contig84830.19765.1 vs. uniprot
Match: G0U2X2_TRYVY (Uncharacterized protein n=1 Tax=Trypanosoma vivax (strain Y486) TaxID=1055687 RepID=G0U2X2_TRYVY)

HSP 1 Score: 70.1 bits (170), Expect = 3.260e-11
Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = 1
Query:  145 PTQHTLQFAEGVHVATESSMRYLAHSSSPNARLVADKEIPGEVTTIQVVLMADVREGDVISFDYRTSEWDMSTPFV-----EKGSGVEIRGFKH 411
            PT HT+   +  H+      +YL HS  PN R++ D         ++ V + D+REG++++F+Y T+EWDM +PF       K  G EIRGF+H
Sbjct:  747 PTTHTIFLGDAQHLLFSEGAQYLGHSCEPNVRILTDCN----ARKLECVAIRDIREGEIVAFNYLTTEWDMQSPFTCLCGSAKCHG-EIRGFRH 835          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84830.19765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2CC74_9STRA1.600e-1438.10Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A836G626_9TRYP4.300e-1337.84Uncharacterized protein n=1 Tax=Leishmania martini... [more]
A0A0N1PEJ5_LEPSE1.090e-1235.34Uncharacterized protein n=1 Tax=Leptomonas seymour... [more]
A0A0S4JQX1_BODSA1.430e-1234.07Uncharacterized protein n=1 Tax=Bodo saltans TaxID... [more]
A0A0M9GAW2_9TRYP6.950e-1233.83Uncharacterized protein n=1 Tax=Leptomonas pyrrhoc... [more]
A0A7G2CCW9_9TRYP9.470e-1234.19SET domain containing protein, putative n=1 Tax=An... [more]
S9TLL9_9TRYP1.250e-1134.88Uncharacterized protein n=1 Tax=Strigomonas culici... [more]
G0UUB1_TRYCI2.300e-1132.14Uncharacterized protein TCIL3000_9_3750 (Fragment)... [more]
A0A836KAL3_9TRYP2.400e-1136.04Uncharacterized protein n=4 Tax=Mundinia TaxID=224... [more]
G0U2X2_TRYVY3.260e-1137.23Uncharacterized protein n=1 Tax=Trypanosoma vivax ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84830contigM-pyrifera_M_contig84830:322..753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue2.4e-10
Seed eggNOG ortholog5664.LmjF.35.4550
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cysteine-rich motif following a subset of SET domains
EggNOG OGs28K9F@1,2QSQ2@2759,3XSYS@5653
COG Functional cat.B
Best tax levelKinetoplastida
Best eggNOG OGNA|NA|NA
Exons1
Model size432
Cds size417
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816755.3745294-UTR-M-pyrifera_M_contig84830:321..3361622816755.3745294-UTR-M-pyrifera_M_contig84830:321..336Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84830 322..336 +
1692278159.1867855-UTR-M-pyrifera_M_contig84830:321..3361692278159.1867855-UTR-M-pyrifera_M_contig84830:321..336Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84830 322..336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816755.389579-CDS-M-pyrifera_M_contig84830:336..7531622816755.389579-CDS-M-pyrifera_M_contig84830:336..753Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84830 337..753 +
1692278159.1990814-CDS-M-pyrifera_M_contig84830:336..7531692278159.1990814-CDS-M-pyrifera_M_contig84830:336..753Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84830 337..753 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84830.19765.1prot_M-pyrifera_M_contig84830.19765.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84830 337..753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84830.19765.1

>prot_M-pyrifera_M_contig84830.19765.1 ID=prot_M-pyrifera_M_contig84830.19765.1|Name=mRNA_M-pyrifera_M_contig84830.19765.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
MSSGTTDVREVEGMGKCVVAARALEAGTVVGAFEKTEKSLMATPTQHTLQ
FAEGVHVATESSMRYLAHSSSPNARLVADKEIPGEVTTIQVVLMADVREG
DVISFDYRTSEWDMSTPFVEKGSGVEIRGFKHAPRKTKR
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mRNA from alignment at M-pyrifera_M_contig84830:322..753+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84830.19765.1 ID=mRNA_M-pyrifera_M_contig84830.19765.1|Name=mRNA_M-pyrifera_M_contig84830.19765.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig84830:322..753+ (Macrocystis pyrifera P11B4 male)
CTCTTGGCTGTTGTTATGTCTTCCGGTACGACGGATGTTCGGGAAGTAGA GGGCATGGGCAAGTGTGTTGTGGCGGCGAGGGCTCTGGAAGCAGGCACAG TGGTGGGTGCGTTTGAGAAGACTGAAAAATCGCTTATGGCAACTCCGACA CAGCACACGCTGCAGTTCGCGGAAGGGGTCCACGTTGCGACAGAGAGCAG TATGCGCTACTTGGCGCACAGCTCTTCGCCGAATGCTCGCCTGGTGGCCG ACAAGGAAATTCCAGGGGAAGTCACCACGATCCAGGTCGTTCTGATGGCC GATGTGCGGGAGGGGGACGTGATTTCGTTCGACTACCGCACGAGCGAATG GGACATGTCGACTCCGTTCGTGGAAAAGGGCTCTGGAGTGGAAATTCGAG GCTTCAAGCACGCTCCAAGGAAGACCAAGAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84830:322..753+

>mRNA_M-pyrifera_M_contig84830.19765.1 ID=mRNA_M-pyrifera_M_contig84830.19765.1|Name=mRNA_M-pyrifera_M_contig84830.19765.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig84830:322..753+ (Macrocystis pyrifera P11B4 male)
ATGTCTTCCGGTACGACGGATGTTCGGGAAGTAGAGGGCATGGGCAAGTG
TGTTGTGGCGGCGAGGGCTCTGGAAGCAGGCACAGTGGTGGGTGCGTTTG
AGAAGACTGAAAAATCGCTTATGGCAACTCCGACACAGCACACGCTGCAG
TTCGCGGAAGGGGTCCACGTTGCGACAGAGAGCAGTATGCGCTACTTGGC
GCACAGCTCTTCGCCGAATGCTCGCCTGGTGGCCGACAAGGAAATTCCAG
GGGAAGTCACCACGATCCAGGTCGTTCTGATGGCCGATGTGCGGGAGGGG
GACGTGATTTCGTTCGACTACCGCACGAGCGAATGGGACATGTCGACTCC
GTTCGTGGAAAAGGGCTCTGGAGTGGAAATTCGAGGCTTCAAGCACGCTC
CAAGGAAGACCAAGAGGATGTCTTCCGGTACGACGGATGTTCGGGAAGTA
GAGGGCATGGGCAAGTGTGTTGTGGCGGCGAGGGCTCTGGAAGCAGGCAC
AGTGGTGGGTGCGTTTGAGAAGACTGAAAAATCGCTTATGGCAACTCCGA
CACAGCACACGCTGCAGTTCGCGGAAGGGGTCCACGTTGCGACAGAGAGC
AGTATGCGCTACTTGGCGCACAGCTCTTCGCCGAATGCTCGCCTGGTGGC
CGACAAGGAAATTCCAGGGGAAGTCACCACGATCCAGGTCGTTCTGATGG
CCGATGTGCGGGAGGGGGACGTGATTTCGTTCGACTACCGCACGAGCGAA
TGGGACATGTCGACTCCGTTCGTGGAAAAGGGCTCTGGAGTGGAAATTCG
AGGCTTCAAGCACGCTCCAAGGAAGACCAAGAGG
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