mRNA_M-pyrifera_M_contig84825.19763.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84825.19763.1
Unique NamemRNA_M-pyrifera_M_contig84825.19763.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig84825.19763.1 vs. uniprot
Match: UPI0018AEC40B (exocyst complex component EXO70B1 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018AEC40B)

HSP 1 Score: 54.7 bits (130), Expect = 1.970e-6
Identity = 29/91 (31.87%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:   34 SMRAKIQAFNAAVEDVYSEQQQYHVPDKELKKKITADIALSLLPIYENFAQRWEVAMAQKQKYEHLLKYSPSTLAKMIDRLFDGSAGVSSP 306
            +MR +++ FN  +EDV+SEQ+ + VPD+ L++++       ++P YE F  R  V    +   + LL +S   +   I  LF GS+ +  P
Sbjct:  497 AMRERLRLFNGYLEDVWSEQRGWVVPDERLRQELREASVGMVVPAYEGFLGRLRVVEGGRGVEKQLLMFSVEDVETRIGDLFQGSSSIRRP 587
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BLAST of mRNA_M-pyrifera_M_contig84825.19763.1 vs. uniprot
Match: A0A7N2N2Q9_QUELO (Exocyst subunit Exo70 family protein n=4 Tax=Fagaceae TaxID=3503 RepID=A0A7N2N2Q9_QUELO)

HSP 1 Score: 54.3 bits (129), Expect = 2.730e-6
Identity = 26/92 (28.26%), Postives = 52/92 (56.52%), Query Frame = 1 
Query:   19 AKVRASMRAKIQAFNAAVEDVYSEQQQYHVPDKELKKKITADIALSLLPIYENFAQRWEVAMAQKQKYEHLLKYSPSTLAKMIDRLFDGSAG 294
            A  R  ++ +++AFN A +++Y++Q  + V DK+L++K    +  +++P+Y ++ Q +   + Q       +KY+  TL KM+  LF    G
Sbjct:  555 ATARDLVKKRLKAFNEAFDEMYTQQSNWVVSDKDLREKTCQVVVQAVVPVYRSYMQNYGPLVEQDASSSKYVKYTVQTLEKMLMSLFHPKPG 646
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BLAST of mRNA_M-pyrifera_M_contig84825.19763.1 vs. uniprot
Match: A0A7S4HS38_9EUKA (Exocyst subunit Exo70 family protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HS38_9EUKA)

HSP 1 Score: 50.8 bits (120), Expect = 6.470e-6
Identity = 30/84 (35.71%), Postives = 45/84 (53.57%), Query Frame = 1 
Query:    4 KGKDDAKVRASMRAKIQAFNAAVEDVYSEQQQYHVPDKELKKKITADIALSLLPIYENFAQRWEVAMAQKQKYEHLLKYSPSTL 255
            KGK D      ++ +IQ+FN   E ++  QQQY +P+KELK++I +++   L P YE F  R  V          L+KY P  +
Sbjct:   32 KGKSD----KHLKQQIQSFNQEFEQMFRNQQQYVIPNKELKEQIVSELKAVLEPCYEAFYAR--VKQTSLSSDNSLMKYPPKVM 109
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84825.19763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI0018AEC40B1.970e-631.87exocyst complex component EXO70B1 n=1 Tax=Dioscore... [more]
A0A7N2N2Q9_QUELO2.730e-628.26Exocyst subunit Exo70 family protein n=4 Tax=Fagac... [more]
A0A7S4HS38_9EUKA6.470e-635.71Exocyst subunit Exo70 family protein (Fragment) n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84825contigM-pyrifera_M_contig84825:10..321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score65.1
Seed ortholog evalue2.2e-08
Seed eggNOG ortholog4006.Lus10021283
KEGG koko:K07195
KEGG Pathwayko04910,map04910
Hectar predicted targeting categoryother localisation
GOsGO:0006810,GO:0006887,GO:0008150,GO:0009987,GO:0016192,GO:0032940,GO:0046903,GO:0051179,GO:0051234
EggNOG free text desc.exocyst complex component
EggNOG OGs37NDF@33090,3G8SS@35493,4JI7H@91835,KOG2344@1,KOG2344@2759
COG Functional cat.U
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04131
Exons1
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816755.1260228-CDS-M-pyrifera_M_contig84825:9..3211622816755.1260228-CDS-M-pyrifera_M_contig84825:9..321Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84825 10..321 +
1692278158.9688544-CDS-M-pyrifera_M_contig84825:9..3211692278158.9688544-CDS-M-pyrifera_M_contig84825:9..321Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84825 10..321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84825.19763.1prot_M-pyrifera_M_contig84825.19763.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84825 10..321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84825.19763.1

>prot_M-pyrifera_M_contig84825.19763.1 ID=prot_M-pyrifera_M_contig84825.19763.1|Name=mRNA_M-pyrifera_M_contig84825.19763.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
GKGKDDAKVRASMRAKIQAFNAAVEDVYSEQQQYHVPDKELKKKITADIA
LSLLPIYENFAQRWEVAMAQKQKYEHLLKYSPSTLAKMIDRLFDGSAGVS
SPR*
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mRNA from alignment at M-pyrifera_M_contig84825:10..321+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84825.19763.1 ID=mRNA_M-pyrifera_M_contig84825.19763.1|Name=mRNA_M-pyrifera_M_contig84825.19763.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig84825:10..321+ (Macrocystis pyrifera P11B4 male)
GGCAAGGGCAAGGACGACGCGAAAGTGCGTGCAAGCATGAGGGCCAAGAT
ACAGGCCTTCAACGCGGCAGTGGAGGACGTCTACAGTGAACAGCAGCAGT
ACCATGTGCCCGACAAGGAACTGAAGAAGAAAATCACCGCCGACATTGCC
CTCAGCCTCCTGCCCATCTATGAGAACTTTGCACAGCGCTGGGAGGTGGC
CATGGCCCAGAAGCAGAAGTACGAACACCTCCTCAAGTACAGTCCCTCTA
CCCTCGCTAAGATGATTGATCGTCTCTTCGACGGCAGTGCAGGCGTGAGC
TCTCCCAGATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84825:10..321+

>mRNA_M-pyrifera_M_contig84825.19763.1 ID=mRNA_M-pyrifera_M_contig84825.19763.1|Name=mRNA_M-pyrifera_M_contig84825.19763.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig84825:10..321+ (Macrocystis pyrifera P11B4 male)
GGCAAGGGCAAGGACGACGCGAAAGTGCGTGCAAGCATGAGGGCCAAGAT
ACAGGCCTTCAACGCGGCAGTGGAGGACGTCTACAGTGAACAGCAGCAGT
ACCATGTGCCCGACAAGGAACTGAAGAAGAAAATCACCGCCGACATTGCC
CTCAGCCTCCTGCCCATCTATGAGAACTTTGCACAGCGCTGGGAGGTGGC
CATGGCCCAGAAGCAGAAGTACGAACACCTCCTCAAGTACAGTCCCTCTA
CCCTCGCTAAGATGATTGATCGTCTCTTCGACGGCAGTGCAGGCGTGAGC
TCTCCCAGATAAGGCAAGGGCAAGGACGACGCGAAAGTGCGTGCAAGCAT
GAGGGCCAAGATACAGGCCTTCAACGCGGCAGTGGAGGACGTCTACAGTG
AACAGCAGCAGTACCATGTGCCCGACAAGGAACTGAAGAAGAAAATCACC
GCCGACATTGCCCTCAGCCTCCTGCCCATCTATGAGAACTTTGCACAGCG
CTGGGAGGTGGCCATGGCCCAGAAGCAGAAGTACGAACACCTCCTCAAGT
ACAGTCCCTCTACCCTCGCTAAGATGATTGATCGTCTCTTCGACGGCAGT
GCAGGCGTGAGCTCTCCCAGATAA
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