mRNA_M-pyrifera_M_contig8482.19759.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8482.19759.1
Unique NamemRNA_M-pyrifera_M_contig8482.19759.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8482.19759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8482contigM-pyrifera_M_contig8482:7985..8593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size609
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8482.19759.1prot_M-pyrifera_M_contig8482.19759.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8482 8069..8374 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816754.9309714-UTR-M-pyrifera_M_contig8482:7984..80681622816754.9309714-UTR-M-pyrifera_M_contig8482:7984..8068Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8482 7985..8068 +
1692278158.8499262-UTR-M-pyrifera_M_contig8482:7984..80681692278158.8499262-UTR-M-pyrifera_M_contig8482:7984..8068Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8482 7985..8068 +
1622816754.9536605-UTR-M-pyrifera_M_contig8482:8374..85931622816754.9536605-UTR-M-pyrifera_M_contig8482:8374..8593Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8482 8375..8593 +
1692278158.8717964-UTR-M-pyrifera_M_contig8482:8374..85931692278158.8717964-UTR-M-pyrifera_M_contig8482:8374..8593Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8482 8375..8593 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816754.9425302-CDS-M-pyrifera_M_contig8482:8068..83741622816754.9425302-CDS-M-pyrifera_M_contig8482:8068..8374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8482 8069..8374 +
1692278158.861068-CDS-M-pyrifera_M_contig8482:8068..83741692278158.861068-CDS-M-pyrifera_M_contig8482:8068..8374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8482 8069..8374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8482.19759.1

>prot_M-pyrifera_M_contig8482.19759.1 ID=prot_M-pyrifera_M_contig8482.19759.1|Name=mRNA_M-pyrifera_M_contig8482.19759.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
MYLRVRSCFSFTRLRIGTKRLPRYRKGRCRVPAVGLGRESIILYYGLRGS
MFSRLRQPHACTFAVRGREREECSVKSVCWASLGVCVDVTNSRFGSNVRQ
P*
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mRNA from alignment at M-pyrifera_M_contig8482:7985..8593+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8482.19759.1 ID=mRNA_M-pyrifera_M_contig8482.19759.1|Name=mRNA_M-pyrifera_M_contig8482.19759.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=609bp|location=Sequence derived from alignment at M-pyrifera_M_contig8482:7985..8593+ (Macrocystis pyrifera P11B4 male)
GGGGTGAGCGCATGTCGGAGGGAGCTGCACGTACTGTAGCTGTTTGTTGA
TGGGAGTCGGGGATGGAGGTAAGCGCCGACGTAGATGTATCTGCGCGTAC
GTAGCTGTTTTTCTTTCACACGACTACGGATAGGAACGAAGCGGTTGCCG
CGGTATCGAAAAGGAAGGTGCAGAGTACCAGCTGTTGGTCTTGGAAGGGA
AAGTATTATACTGTACTACGGTCTTAGAGGTTCTATGTTTTCGAGGTTAC
GCCAGCCACATGCATGTACATTTGCCGTTCGAGGACGTGAGAGAGAGGAG
TGCAGTGTCAAGTCAGTGTGCTGGGCGAGTTTAGGTGTATGTGTTGATGT
GACGAATAGTAGGTTTGGATCGAACGTGAGGCAGCCCTAGGACGGCATTC
GCCGGGTGTTACAGCAGCAATACAAAAGTTGATGCAATACGCCAAAAAGT
AGTCGATCGACTCCGCGTCGGTAGCTCCTGGTAGTGCGTTTTGTTCAATG
TAAAAGGTTCTATGACAGTACTCGTACACGCAAGCTGTTTTTTTTTAACA
AGAGGCGGAAGCCTGGATGGACGCAGTAAGCGTGCCGAGAATGAAATAAA
GGTTTGAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8482:7985..8593+

>mRNA_M-pyrifera_M_contig8482.19759.1 ID=mRNA_M-pyrifera_M_contig8482.19759.1|Name=mRNA_M-pyrifera_M_contig8482.19759.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig8482:7985..8593+ (Macrocystis pyrifera P11B4 male)
ATGTATCTGCGCGTACGTAGCTGTTTTTCTTTCACACGACTACGGATAGG
AACGAAGCGGTTGCCGCGGTATCGAAAAGGAAGGTGCAGAGTACCAGCTG
TTGGTCTTGGAAGGGAAAGTATTATACTGTACTACGGTCTTAGAGGTTCT
ATGTTTTCGAGGTTACGCCAGCCACATGCATGTACATTTGCCGTTCGAGG
ACGTGAGAGAGAGGAGTGCAGTGTCAAGTCAGTGTGCTGGGCGAGTTTAG
GTGTATGTGTTGATGTGACGAATAGTAGGTTTGGATCGAACGTGAGGCAG
CCCTAGATGTATCTGCGCGTACGTAGCTGTTTTTCTTTCACACGACTACG
GATAGGAACGAAGCGGTTGCCGCGGTATCGAAAAGGAAGGTGCAGAGTAC
CAGCTGTTGGTCTTGGAAGGGAAAGTATTATACTGTACTACGGTCTTAGA
GGTTCTATGTTTTCGAGGTTACGCCAGCCACATGCATGTACATTTGCCGT
TCGAGGACGTGAGAGAGAGGAGTGCAGTGTCAAGTCAGTGTGCTGGGCGA
GTTTAGGTGTATGTGTTGATGTGACGAATAGTAGGTTTGGATCGAACGTG
AGGCAGCCCTAG
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