mRNA_M-pyrifera_M_contig84782.19754.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84782.19754.1
Unique NamemRNA_M-pyrifera_M_contig84782.19754.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig84782.19754.1 vs. uniprot
Match: A0A5A8DDD1_CAFRO (DNA-directed RNA polymerase subunit beta n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DDD1_CAFRO)

HSP 1 Score: 317 bits (811), Expect = 3.540e-96
Identity = 153/251 (60.96%), Postives = 195/251 (77.69%), Query Frame = 1 
Query:   22 KEEDAKECSDRFSWLLSQGVVEYIDCLEEEGAMIAMDPNAIDTTRGKRHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNFIVRMDTMANCLYYPQKPAVSTRAMEYMHFKELPAGINSIIAIACYTGYNQEDSLMLNQSAVDRGFFRSVFYRTYDAAEENIPLPTP-GASSTTLTGPPPGSTEQWVMFERPSPGNCSGRILEERYAVMDDDGMVAPGTLVTGGDALVGMTTTLPD 771
            +EE   +   R++ L+ +G +E ID  EEEG MIAM    ++      +THCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMG+YASNF  RMDTMA+ LYYPQKP V+T AMEYMHF+ELPAGINSI+AI+ +TGYNQEDSL++NQS++DRGFFRS+FYRTY AAE+N+PLP+  G++  T+ GP   + +QW  FE+P+P   +G +    ++ +D+DG+V PGT V GGD ++G T T+PD
Sbjct:  696 REEIIAQSKSRYTLLMQEGALELIDTEEEEGCMIAMTERDLEEGICSSYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYASNFTARMDTMAHVLYYPQKPLVATHAMEYMHFRELPAGINSIVAISTFTGYNQEDSLIMNQSSIDRGFFRSIFYRTYSAAEKNVPLPSADGSALLTMPGP---TQKQWDQFEKPNPAITAG-MGNSDFSKLDEDGLVEPGTAVFGGDIIIGKTVTVPD 942
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BLAST of mRNA_M-pyrifera_M_contig84782.19754.1 vs. uniprot
Match: A0A5J4NQ19_9TREM (DNA-directed RNA polymerase subunit beta n=1 Tax=Paragonimus westermani TaxID=34504 RepID=A0A5J4NQ19_9TREM)

HSP 1 Score: 289 bits (740), Expect = 4.890e-91
Identity = 148/244 (60.66%), Postives = 175/244 (71.72%), Query Frame = 1 
Query:   52 RFSW--LLSQGVVEYIDCLEEEGAMIAMDPNAIDTTRG--KRHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNFIVRMDTMANCLYYPQKPAVSTRAMEYMHFKELPAGINSIIAIACYTGYNQEDSLMLNQSAVDRGFFRSVFYRTYDAAEENIPLPTPGASSTTLTGPPPGSTEQWVMFERPSPGNCSGRILEERYAVMDDDGMVAPGTLVTGGDALVGMTTTLPD 771
            R+SW  L+  GVVEYID LEEE  MIAM P  +       K HTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMG+Y SNF  RMDT+AN LYYPQKP V+TR+MEY+ F+ELPAGIN+I+AIA YTGYNQEDS++LN+SA+ RGFFRS FYRTY   E    +                  +Q  +FE+P+P  C G +    Y  +DDDG++APGT V+G D L+G T TLP+
Sbjct:   67 RYSWQDLVLSGVVEYIDTLEEETVMIAMGPAEMQAAVHYCKTHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYISNFHTRMDTLANVLYYPQKPLVATRSMEYLRFRELPAGINAIVAIATYTGYNQEDSVILNESAIQRGFFRSEFYRTYKDQEARHGM------------------DQEEVFEKPNPQQCQG-MRHAIYDKLDDDGLIAPGTRVSGDDVLIGKTITLPE 291
[Close]
BLAST of mRNA_M-pyrifera_M_contig84782.19754.1 vs. uniprot
Match: A0A8J6HXL3_TENMO (DNA-directed RNA polymerase n=2 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HXL3_TENMO)

HSP 1 Score: 276 bits (707), Expect = 5.640e-90
Identity = 142/246 (57.72%), Postives = 177/246 (71.95%), Query Frame = 1 
Query:   55 FSW--LLSQGVVEYIDCLEEEGAMIAMDPNAIDTTRG----KRHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNFIVRMDTMANCLYYPQKPAVSTRAMEYMHFKELPAGINSIIAIACYTGYNQEDSLMLNQSAVDRGFFRSVFYRTY-DAAEENIPLPTPGASSTTLTGPPPGSTEQWVMFERPSPGNCSGRILEERYAVMDDDGMVAPGTLVTGGDALVGMTTTLPD 771
            + W  L++ GVVEYID LEEE  MIAM P+ +   +       +THCEIHP+MILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y +NF VRMDT+A+ LYYP KP V+TR+MEY+ F+ELPAGINSI+AIACYTGYNQEDS++LN SAV+RGFFRSVFYR+Y DA  + I                 G  E+   FE+P+   C G +    Y  +DDDG+++PG  V+G D ++G T TLP+
Sbjct:   10 YGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAIACYTGYNQEDSVILNASAVERGFFRSVFYRSYKDAESKRI-----------------GDQEE--QFEKPTRQTCQG-MRNALYDKLDDDGIISPGIRVSGDDVVIGKTMTLPE 235
[Close]
BLAST of mRNA_M-pyrifera_M_contig84782.19754.1 vs. uniprot
Match: A0A183JFR7_9TREM (DNA-directed RNA polymerase n=2 Tax=Platyhelminthes TaxID=6157 RepID=A0A183JFR7_9TREM)

HSP 1 Score: 289 bits (739), Expect = 2.480e-88
Identity = 147/244 (60.25%), Postives = 175/244 (71.72%), Query Frame = 1 
Query:   52 RFSW--LLSQGVVEYIDCLEEEGAMIAMDPNAIDTTRG--KRHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNFIVRMDTMANCLYYPQKPAVSTRAMEYMHFKELPAGINSIIAIACYTGYNQEDSLMLNQSAVDRGFFRSVFYRTYDAAEENIPLPTPGASSTTLTGPPPGSTEQWVMFERPSPGNCSGRILEERYAVMDDDGMVAPGTLVTGGDALVGMTTTLPD 771
            R+SW  L+  GVVEYID LEEE  MIAM P  +       K HTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMG+Y SNF  RMDT+AN LYYPQKP V+TR+MEY+ F+ELPAGIN+I+AIA YTGYNQEDS+++N+SA+ RGFFRS FYRTY   E    +                  +   +FE+P+P NC G +    Y  +DDDG++APGT V+G D L+G T TLP+
Sbjct:  630 RYSWQDLVFSGVVEYIDTLEEETVMIAMGPAEMQAAVNYCKTHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYISNFHTRMDTLANVLYYPQKPLVATRSMEYLRFRELPAGINAIVAIATYTGYNQEDSVIINESAIQRGFFRSEFYRTYKDQETRHGM------------------DLEEVFEKPNPQNCQG-MRHAIYDKLDDDGLIAPGTRVSGDDVLIGKTITLPE 854
[Close]
BLAST of mRNA_M-pyrifera_M_contig84782.19754.1 vs. uniprot
Match: A0A0S7LL30_9TELE (DNA-directed RNA polymerase n=5 Tax=Euteleostomi TaxID=117571 RepID=A0A0S7LL30_9TELE)

HSP 1 Score: 278 bits (712), Expect = 1.310e-87
Identity = 141/244 (57.79%), Postives = 174/244 (71.31%), Query Frame = 1 
Query:   55 FSW--LLSQGVVEYIDCLEEEGAMIAMDPNAID---TTRGKRHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNFIVRMDTMANCLYYPQKPAVSTRAMEYMHFKELPAGINSIIAIACYTGYNQEDSLMLNQSAVDRGFFRSVFYRTYDAAEENIPLPTPGASSTTLTGPPPGSTEQWVMFERPSPGNCSGRILEERYAVMDDDGMVAPGTLVTGGDALVGMTTTLPD 771
             SW  L++ GVVEYID LEEE  M+AM P+ +          +THCEIHPSMILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y +NF VRMDT+A+ LYYPQKP V+TR+MEY+ F+ELPAGINSI+AIA YTGYNQEDS+++N+SAVDRGFFRSVFYR+Y   E                       +Q  +FE+P+   C G +    Y  +DDDG++APG  V+G D ++G T TLP+
Sbjct:    6 LSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGF------------------DQEEIFEKPTRETCQG-MRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPE 230
[Close]
BLAST of mRNA_M-pyrifera_M_contig84782.19754.1 vs. uniprot
Match: A0A7L1D5K7_9PASS (DNA-directed RNA polymerase subunit beta (Fragment) n=3 Tax=Sauria TaxID=32561 RepID=A0A7L1D5K7_9PASS)

HSP 1 Score: 279 bits (713), Expect = 7.880e-87
Identity = 141/244 (57.79%), Postives = 175/244 (71.72%), Query Frame = 1 
Query:   55 FSW--LLSQGVVEYIDCLEEEGAMIAMDPNAID---TTRGKRHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNFIVRMDTMANCLYYPQKPAVSTRAMEYMHFKELPAGINSIIAIACYTGYNQEDSLMLNQSAVDRGFFRSVFYRTYDAAEENIPLPTPGASSTTLTGPPPGSTEQWVMFERPSPGNCSGRILEERYAVMDDDGMVAPGTLVTGGDALVGMTTTLPD 771
            +SW  L++ GVVEYID LEEE  M+AM P+ +          +THCEIHPSMILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y +NF VRMDT+A+ LYYPQKP V+TR+MEY+ F+ELPAGINSI+AIA YTGYNQEDS+++N+SAVDRGFFRSVFYR+Y   E                       +Q  +FE+P+   C G +    Y  +DDDG++APG  V+G D ++G T TLP+
Sbjct:   91 YSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQEFKK------------------GYDQEEVFEKPTRETCQG-MRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPE 315
[Close]
BLAST of mRNA_M-pyrifera_M_contig84782.19754.1 vs. uniprot
Match: A0A3Q0KLS8_SCHMA (DNA-directed RNA polymerase subunit beta n=20 Tax=Platyhelminthes TaxID=6157 RepID=A0A3Q0KLS8_SCHMA)

HSP 1 Score: 289 bits (739), Expect = 1.330e-86
Identity = 147/244 (60.25%), Postives = 175/244 (71.72%), Query Frame = 1 
Query:   52 RFSW--LLSQGVVEYIDCLEEEGAMIAMDPNAIDTTRG--KRHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNFIVRMDTMANCLYYPQKPAVSTRAMEYMHFKELPAGINSIIAIACYTGYNQEDSLMLNQSAVDRGFFRSVFYRTYDAAEENIPLPTPGASSTTLTGPPPGSTEQWVMFERPSPGNCSGRILEERYAVMDDDGMVAPGTLVTGGDALVGMTTTLPD 771
            R+SW  L+  GVVEYID LEEE  MIAM P  +       K HTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMG+Y SNF  RMDT+AN LYYPQKP V+TR+MEY+ F+ELPAGIN+I+AIA YTGYNQEDS+++N+SA+ RGFFRS FYRTY   E    +                  +   +FE+P+P NC G +    Y  +DDDG++APGT V+G D L+G T TLP+
Sbjct:  668 RYSWQDLVLSGVVEYIDTLEEETVMIAMGPAEMQAAVNYCKTHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYISNFHTRMDTLANVLYYPQKPLVATRSMEYLRFRELPAGINAIVAIATYTGYNQEDSVIINESAIQRGFFRSEFYRTYKDQETRHGM------------------DLEEVFEKPNPQNCQG-MRHAIYDKLDDDGLIAPGTRVSGDDVLIGKTITLPE 892
[Close]
BLAST of mRNA_M-pyrifera_M_contig84782.19754.1 vs. uniprot
Match: A0A2P4SJJ2_BAMTH (DNA-directed RNA polymerase (Fragment) n=1 Tax=Bambusicola thoracicus TaxID=9083 RepID=A0A2P4SJJ2_BAMTH)

HSP 1 Score: 280 bits (716), Expect = 1.500e-86
Identity = 141/244 (57.79%), Postives = 175/244 (71.72%), Query Frame = 1 
Query:   55 FSW--LLSQGVVEYIDCLEEEGAMIAMDPNAID---TTRGKRHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNFIVRMDTMANCLYYPQKPAVSTRAMEYMHFKELPAGINSIIAIACYTGYNQEDSLMLNQSAVDRGFFRSVFYRTYDAAEENIPLPTPGASSTTLTGPPPGSTEQWVMFERPSPGNCSGRILEERYAVMDDDGMVAPGTLVTGGDALVGMTTTLPD 771
            +SW  L++ GVVEYID LEEE  M+AM P+ +          +THCEIHPSMILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y +NF VRMDT+A+ LYYPQKP V+TR+MEY+ F+ELPAGINSI+AIA YTGYNQEDS+++N+SAVDRGFFRSVFYR+Y   E                       +Q  +FE+P+   C G +    Y  +DDDG++APG  V+G D ++G T TLP+
Sbjct:  406 YSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK------------------GYDQEEVFEKPTRETCQG-MRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPE 630
[Close]
BLAST of mRNA_M-pyrifera_M_contig84782.19754.1 vs. uniprot
Match: A0A2H2ITX3_CAEJA (DNA-directed RNA polymerase n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2ITX3_CAEJA)

HSP 1 Score: 266 bits (680), Expect = 3.510e-86
Identity = 135/250 (54.00%), Postives = 174/250 (69.60%), Query Frame = 1 
Query:   46 SDRFSW--LLSQGVVEYIDCLEEEGAMIAMDPNAI------DTTRGKRHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNFIVRMDTMANCLYYPQKPAVSTRAMEYMHFKELPAGINSIIAIACYTGYNQEDSLMLNQSAVDRGFFRSVFYRTYDAAEENIPLPTPGASSTTLTGPPPGSTEQWVMFERPSPGNCSGRILEERYAVMDDDGMVAPGTLVTGGDALVGMTTTLPD 771
            S++++W  L+  GVVE ID +EEE +MIAM P  +      DT     HTHCEIHP+MILG+CASIIPFPDHNQSPRNTYQSAMGKQAMG+Y +NF VRMDT+A+ LYYPQKP V+TR+MEY+ F ELPAGIN+I+AI  Y+GYNQEDS+++N SA+DRG FRSVFYR+Y   E N+  P                     + E+P+   CSG +    Y  +D+DG+++PG  V+G D ++G T  +PD
Sbjct:    5 SNKYAWSDLVGGGVVELIDSMEEETSMIAMMPEDLRIGGYCDT-----HTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANLDNPNE------------------ELIEKPTRDKCSG-MRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVAVPD 230
[Close]
BLAST of mRNA_M-pyrifera_M_contig84782.19754.1 vs. uniprot
Match: A0A662XQG4_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XQG4_9STRA)

HSP 1 Score: 284 bits (727), Expect = 4.240e-86
Identity = 155/256 (60.55%), Postives = 184/256 (71.88%), Query Frame = 1 
Query:    1 MQLEDDIKEEDAKECSDRFSWLLSQGVVEYIDCLEEEGAMIAMDPNAIDTTRGKRHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNFIVRMDTMANCLYYPQKPAVSTRAMEYMHFKELPAGINSIIAIACYTGYNQEDSLMLNQSAVDRGFFRSVFYRTYDAAEENIPLPTPGASSTTLTGPPPGSTEQWVMFERPSPGNCSGRILEERYAVMDDDGMVAPGTLVTGGDALVGMTTTLP 768
            +Q E  +K ++ K  + R+  LL+ GVVE ID  EEE  MIAM+P  + T   + HTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIY SNF  RMDTMAN L YPQKP V+TRAMEY+HF+ELP+GIN+I+ IA YTGYNQEDSL++NQSA+DRGFFRS FYR Y   E N   P  GA      G    + E+   FE+PS  NC G +    Y  +D DG+VAPGT V+G D ++G T+ LP
Sbjct:  396 LQKEQVVKLQNHKITNYRWHNLLTDGVVELIDTEEEEVCMIAMEPKDVGTGT-QIHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYCSNFRARMDTMANVLNYPQKPLVTTRAMEYLHFRELPSGINAIVGIASYTGYNQEDSLIMNQSAIDRGFFRSTFYRCYVDQERNK-SPHGGAGG----GAGGSNCEE---FEKPSRENCLG-LRHGSYHKLDADGLVAPGTRVSGNDIIIGKTSPLP 641
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84782.19754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DDD1_CAFRO3.540e-9660.96DNA-directed RNA polymerase subunit beta n=4 Tax=C... [more]
A0A5J4NQ19_9TREM4.890e-9160.66DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A8J6HXL3_TENMO5.640e-9057.72DNA-directed RNA polymerase n=2 Tax=Tenebrio molit... [more]
A0A183JFR7_9TREM2.480e-8860.25DNA-directed RNA polymerase n=2 Tax=Platyhelminthe... [more]
A0A0S7LL30_9TELE1.310e-8757.79DNA-directed RNA polymerase n=5 Tax=Euteleostomi T... [more]
A0A7L1D5K7_9PASS7.880e-8757.79DNA-directed RNA polymerase subunit beta (Fragment... [more]
A0A3Q0KLS8_SCHMA1.330e-8660.25DNA-directed RNA polymerase subunit beta n=20 Tax=... [more]
A0A2P4SJJ2_BAMTH1.500e-8657.79DNA-directed RNA polymerase (Fragment) n=1 Tax=Bam... [more]
A0A2H2ITX3_CAEJA3.510e-8654.00DNA-directed RNA polymerase n=1 Tax=Caenorhabditis... [more]
A0A662XQG4_9STRA4.240e-8660.55DNA-directed RNA polymerase subunit beta n=2 Tax=N... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84782contigM-pyrifera_M_contig84782:24..794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score287.7
Seed ortholog evalue5.2e-75
Seed eggNOG ortholog6183.Smp_130680.1
Preferred namePOLR2B
KEGG rclassRC02795
KEGG koko:K03010
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000428,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006354,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008380,GO:0008543,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009719,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0023052,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036260,GO:0042221,GO:0042795,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055029,GO:0060147,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0090304,GO:0097159,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGs38F5S@33154,3BFJJ@33208,3CVQS@33213,COG0085@1,KOG0214@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Exons1
Model size771
Cds size771
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816754.7426202-CDS-M-pyrifera_M_contig84782:23..7941622816754.7426202-CDS-M-pyrifera_M_contig84782:23..794Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84782 24..794 -
1692278158.7724445-CDS-M-pyrifera_M_contig84782:23..7941692278158.7724445-CDS-M-pyrifera_M_contig84782:23..794Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84782 24..794 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84782.19754.1prot_M-pyrifera_M_contig84782.19754.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84782 24..794 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84782.19754.1

>prot_M-pyrifera_M_contig84782.19754.1 ID=prot_M-pyrifera_M_contig84782.19754.1|Name=mRNA_M-pyrifera_M_contig84782.19754.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=257bp
MQLEDDIKEEDAKECSDRFSWLLSQGVVEYIDCLEEEGAMIAMDPNAIDT
TRGKRHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYA
SNFIVRMDTMANCLYYPQKPAVSTRAMEYMHFKELPAGINSIIAIACYTG
YNQEDSLMLNQSAVDRGFFRSVFYRTYDAAEENIPLPTPGASSTTLTGPP
PGSTEQWVMFERPSPGNCSGRILEERYAVMDDDGMVAPGTLVTGGDALVG
MTTTLPD
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mRNA from alignment at M-pyrifera_M_contig84782:24..794-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84782.19754.1 ID=mRNA_M-pyrifera_M_contig84782.19754.1|Name=mRNA_M-pyrifera_M_contig84782.19754.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=771bp|location=Sequence derived from alignment at M-pyrifera_M_contig84782:24..794- (Macrocystis pyrifera P11B4 male)
ATGCAATTGGAAGATGATATCAAGGAGGAAGATGCCAAGGAATGTTCTGA
TCGTTTCTCCTGGCTCTTGTCTCAAGGTGTTGTGGAGTACATTGATTGCT
TGGAGGAGGAAGGTGCAATGATTGCTATGGATCCCAATGCAATTGATACG
ACACGTGGGAAACGACACACCCATTGTGAAATCCATCCTTCCATGATTCT
TGGAATTTGTGCATCTATCATTCCATTCCCAGATCACAACCAATCTCCTC
GCAACACATATCAAAGTGCTATGGGAAAGCAAGCCATGGGAATTTATGCT
TCCAACTTTATCGTTCGCATGGATACAATGGCCAACTGTCTCTACTACCC
ACAAAAACCTGCAGTATCAACTCGTGCCATGGAATACATGCATTTCAAGG
AACTCCCTGCTGGAATCAACTCGATCATTGCAATTGCATGCTACACTGGA
TACAACCAAGAAGATTCATTGATGTTGAATCAAAGCGCAGTGGATCGTGG
CTTCTTCCGTTCTGTGTTTTACCGCACGTATGATGCTGCAGAAGAAAACA
TCCCACTCCCAACTCCTGGAGCATCTTCCACAACGCTTACTGGCCCACCA
CCAGGATCAACGGAGCAATGGGTGATGTTCGAACGCCCATCTCCTGGGAA
TTGTTCTGGTCGCATTTTGGAAGAACGATATGCAGTGATGGATGACGATG
GAATGGTGGCACCTGGAACTTTGGTGACAGGAGGAGATGCGCTCGTAGGC
ATGACCACAACCCTTCCAGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84782:24..794-

>mRNA_M-pyrifera_M_contig84782.19754.1 ID=mRNA_M-pyrifera_M_contig84782.19754.1|Name=mRNA_M-pyrifera_M_contig84782.19754.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1542bp|location=Sequence derived from alignment at M-pyrifera_M_contig84782:24..794- (Macrocystis pyrifera P11B4 male)
ATGCAATTGGAAGATGATATCAAGGAGGAAGATGCCAAGGAATGTTCTGA
TCGTTTCTCCTGGCTCTTGTCTCAAGGTGTTGTGGAGTACATTGATTGCT
TGGAGGAGGAAGGTGCAATGATTGCTATGGATCCCAATGCAATTGATACG
ACACGTGGGAAACGACACACCCATTGTGAAATCCATCCTTCCATGATTCT
TGGAATTTGTGCATCTATCATTCCATTCCCAGATCACAACCAATCTCCTC
GCAACACATATCAAAGTGCTATGGGAAAGCAAGCCATGGGAATTTATGCT
TCCAACTTTATCGTTCGCATGGATACAATGGCCAACTGTCTCTACTACCC
ACAAAAACCTGCAGTATCAACTCGTGCCATGGAATACATGCATTTCAAGG
AACTCCCTGCTGGAATCAACTCGATCATTGCAATTGCATGCTACACTGGA
TACAACCAAGAAGATTCATTGATGTTGAATCAAAGCGCAGTGGATCGTGG
CTTCTTCCGTTCTGTGTTTTACCGCACGTATGATGCTGCAGAAGAAAACA
TCCCACTCCCAACTCCTGGAGCATCTTCCACAACGCTTACTGGCCCACCA
CCAGGATCAACGGAGCAATGGGTGATGTTCGAACGCCCATCTCCTGGGAA
TTGTTCTGGTCGCATTTTGGAAGAACGATATGCAGTGATGGATGACGATG
GAATGGTGGCACCTGGAACTTTGGTGACAGGAGGAGATGCGCTCGTAGGC
ATGACCACAACCCTTCCAGACATGCAATTGGAAGATGATATCAAGGAGGA
AGATGCCAAGGAATGTTCTGATCGTTTCTCCTGGCTCTTGTCTCAAGGTG
TTGTGGAGTACATTGATTGCTTGGAGGAGGAAGGTGCAATGATTGCTATG
GATCCCAATGCAATTGATACGACACGTGGGAAACGACACACCCATTGTGA
AATCCATCCTTCCATGATTCTTGGAATTTGTGCATCTATCATTCCATTCC
CAGATCACAACCAATCTCCTCGCAACACATATCAAAGTGCTATGGGAAAG
CAAGCCATGGGAATTTATGCTTCCAACTTTATCGTTCGCATGGATACAAT
GGCCAACTGTCTCTACTACCCACAAAAACCTGCAGTATCAACTCGTGCCA
TGGAATACATGCATTTCAAGGAACTCCCTGCTGGAATCAACTCGATCATT
GCAATTGCATGCTACACTGGATACAACCAAGAAGATTCATTGATGTTGAA
TCAAAGCGCAGTGGATCGTGGCTTCTTCCGTTCTGTGTTTTACCGCACGT
ATGATGCTGCAGAAGAAAACATCCCACTCCCAACTCCTGGAGCATCTTCC
ACAACGCTTACTGGCCCACCACCAGGATCAACGGAGCAATGGGTGATGTT
CGAACGCCCATCTCCTGGGAATTGTTCTGGTCGCATTTTGGAAGAACGAT
ATGCAGTGATGGATGACGATGGAATGGTGGCACCTGGAACTTTGGTGACA
GGAGGAGATGCGCTCGTAGGCATGACCACAACCCTTCCAGAC
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