mRNA_M-pyrifera_M_contig84762.19748.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84762.19748.1
Unique NamemRNA_M-pyrifera_M_contig84762.19748.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84762.19748.1 vs. uniprot
Match: A0A8K0KNN4_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0KNN4_LADFU)

HSP 1 Score: 58.2 bits (139), Expect = 2.880e-8
Identity = 25/62 (40.32%), Postives = 41/62 (66.13%), Query Frame = 1
Query:   64 VFNALDYKRDGLVSLDEWRAGTAVLTKGSVCERRRFGFALIDLDHDGYITEDDLAEAVLACH 249
            VFN LD  + G ++  +   G ++L KGS+ ER R+ F+L D++ DGY+T ++LAE + A +
Sbjct:   74 VFNTLDRTKSGTITFSDIMLGLSILLKGSLQERLRWAFSLYDVNDDGYVTREELAEVITAIY 135          
BLAST of mRNA_M-pyrifera_M_contig84762.19748.1 vs. uniprot
Match: UPI001D04CF44 (uncharacterized protein n=2 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001D04CF44)

HSP 1 Score: 56.6 bits (135), Expect = 2.460e-7
Identity = 29/85 (34.12%), Postives = 49/85 (57.65%), Query Frame = 1
Query:    4 LGELLDGEDFVGAKHSLLQRVFNALDYKRDGLVSLDEWRAGTAVLTKGSVCERRRFGFALIDLDHDGYITEDDLAEAVLACHATL 258
            LG L D ++   A   L + +F A D    G +   E+ A  A+L++GSV ++  F F++IDLDHDG ++ ++L + + A +  L
Sbjct:  180 LGRLNDSDNQSDADLVLGKILFRAFDKDNSGTIDYREFLATMAILSRGSVEQKIEFAFSMIDLDHDGKLSREELQKVITALYKVL 264          
BLAST of mRNA_M-pyrifera_M_contig84762.19748.1 vs. uniprot
Match: A0A4U5MS01_STECR (Uncharacterized protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U5MS01_STECR)

HSP 1 Score: 55.5 bits (132), Expect = 3.110e-7
Identity = 25/65 (38.46%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   64 VFNALDYKRDGLVSLDEWRAGTAVLTKGSVCERRRFGFALIDLDHDGYITEDDLAEAVLACHATL 258
            VFN  D  RDG +S  E+ A  ++ ++G++ E+  + F+L D+D DGYIT+D++A  V A ++ +
Sbjct:   83 VFNVFDDNRDGHISFREFIAALSITSRGTLDEKLDWAFSLYDVDKDGYITKDEMANIVEAIYSMI 147          
BLAST of mRNA_M-pyrifera_M_contig84762.19748.1 vs. uniprot
Match: A0A6A5CA45_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5CA45_NAEFO)

HSP 1 Score: 56.2 bits (134), Expect = 3.370e-7
Identity = 29/85 (34.12%), Postives = 49/85 (57.65%), Query Frame = 1
Query:    4 LGELLDGEDFVGAKHSLLQRVFNALDYKRDGLVSLDEWRAGTAVLTKGSVCERRRFGFALIDLDHDGYITEDDLAEAVLACHATL 258
            LG L D ++   A   L + +F A D    G +   E+ A  A+L++G+V ++  F F++IDLDHDG ++ ++L + V A +  L
Sbjct:  193 LGRLNDSDNQSDADLVLGKILFRAFDKDNSGTIDYREFLATMAILSRGNVEQKLEFAFSMIDLDHDGKLSREELQKVVTALYKVL 277          
BLAST of mRNA_M-pyrifera_M_contig84762.19748.1 vs. uniprot
Match: A0A6J1WXK4_GALME (Kv channel-interacting protein 1 n=3 Tax=Obtectomera TaxID=104431 RepID=A0A6J1WXK4_GALME)

HSP 1 Score: 54.3 bits (129), Expect = 4.820e-7
Identity = 30/67 (44.78%), Postives = 37/67 (55.22%), Query Frame = 1
Query:   64 VFNALDYKRDGLVSLDEWRAGTAVLTKGSVCERRRFGFALIDLDHDGYITEDDLAEAVLACHATLIR 264
            VF A D    G +S  E     + L +GSV ER R+ F L D+D DG IT  +LAE V+A H  L R
Sbjct:   38 VFKAFDVNCSGAISFRELLVTLSTLLRGSVYERLRWAFRLYDVDGDGAITRQELAEVVVAVHELLGR 104          
BLAST of mRNA_M-pyrifera_M_contig84762.19748.1 vs. uniprot
Match: A0A7R9JP07_TIMGE (Hypothetical protein n=1 Tax=Timema genevievae TaxID=629358 RepID=A0A7R9JP07_TIMGE)

HSP 1 Score: 55.1 bits (131), Expect = 5.650e-7
Identity = 26/75 (34.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query:   34 VGAKHSLLQRVFNALDYKRDGLVSLDEWRAGTAVLTKGSVCERRRFGFALIDLDHDGYITEDDLAEAVLACHATL 258
            +G        VF  LD    G+++  ++  G +V+ KGS+ ER R+ F+L D++HDG+IT  +L + V A ++ L
Sbjct:  122 LGDSSQYAHYVFTNLDKGHTGIITFRDFMFGMSVVMKGSLQERLRWAFSLYDINHDGFITRQELLDVVSAIYSLL 196          
BLAST of mRNA_M-pyrifera_M_contig84762.19748.1 vs. uniprot
Match: A0A2A4J1H7_HELVI (Uncharacterized protein (Fragment) n=1 Tax=Heliothis virescens TaxID=7102 RepID=A0A2A4J1H7_HELVI)

HSP 1 Score: 54.3 bits (129), Expect = 6.670e-7
Identity = 30/67 (44.78%), Postives = 37/67 (55.22%), Query Frame = 1
Query:   64 VFNALDYKRDGLVSLDEWRAGTAVLTKGSVCERRRFGFALIDLDHDGYITEDDLAEAVLACHATLIR 264
            VF A D    G +S  E     + L +GSV ER R+ F L D+D DG IT  +LAE V+A H  L R
Sbjct:    8 VFKAFDVNCSGAISFRELLVTLSTLLRGSVYERLRWAFRLYDVDGDGAITRQELAEVVVAVHELLGR 74          
BLAST of mRNA_M-pyrifera_M_contig84762.19748.1 vs. uniprot
Match: UPI000B369D8D (Kv channel-interacting protein 1-like n=1 Tax=Helicoverpa armigera TaxID=29058 RepID=UPI000B369D8D)

HSP 1 Score: 54.3 bits (129), Expect = 8.060e-7
Identity = 30/67 (44.78%), Postives = 37/67 (55.22%), Query Frame = 1
Query:   64 VFNALDYKRDGLVSLDEWRAGTAVLTKGSVCERRRFGFALIDLDHDGYITEDDLAEAVLACHATLIR 264
            VF A D    G +S  E     + L +GSV ER R+ F L D+D DG IT  +LAE V+A H  L R
Sbjct:   84 VFKAFDVNCSGAISFRELLVTLSTLLRGSVYERLRWAFRLYDVDGDGAITRQELAEVVVAVHELLGR 150          
BLAST of mRNA_M-pyrifera_M_contig84762.19748.1 vs. uniprot
Match: A0A7E5WTP2_TRINI (Kv channel-interacting protein 1 isoform X2 n=2 Tax=Obtectomera TaxID=104431 RepID=A0A7E5WTP2_TRINI)

HSP 1 Score: 54.3 bits (129), Expect = 8.300e-7
Identity = 30/67 (44.78%), Postives = 37/67 (55.22%), Query Frame = 1
Query:   64 VFNALDYKRDGLVSLDEWRAGTAVLTKGSVCERRRFGFALIDLDHDGYITEDDLAEAVLACHATLIR 264
            VF A D    G +S  E     + L +GSV ER R+ F L D+D DG IT  +LAE V+A H  L R
Sbjct:   82 VFKAFDVNCSGAISFRELLVTLSTLLRGSVYERLRWAFRLYDVDGDGAITRQELAEVVVAVHELLGR 148          
BLAST of mRNA_M-pyrifera_M_contig84762.19748.1 vs. uniprot
Match: A0A6J2JYB9_BOMMA (Kv channel-interacting protein 1 isoform X1 n=25 Tax=Ditrysia TaxID=37567 RepID=A0A6J2JYB9_BOMMA)

HSP 1 Score: 54.3 bits (129), Expect = 8.460e-7
Identity = 30/67 (44.78%), Postives = 37/67 (55.22%), Query Frame = 1
Query:   64 VFNALDYKRDGLVSLDEWRAGTAVLTKGSVCERRRFGFALIDLDHDGYITEDDLAEAVLACHATLIR 264
            VF A D    G +S  E     + L +GSV ER R+ F L D+D DG IT  +LAE V+A H  L R
Sbjct:   84 VFKAFDVNCSGAISFRELLVTLSTLLRGSVYERLRWAFRLYDVDGDGAITRQELAEVVVAVHELLGR 150          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84762.19748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8K0KNN4_LADFU2.880e-840.32Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
UPI001D04CF442.460e-734.12uncharacterized protein n=2 Tax=Naegleria lovanien... [more]
A0A4U5MS01_STECR3.110e-738.46Uncharacterized protein n=1 Tax=Steinernema carpoc... [more]
A0A6A5CA45_NAEFO3.370e-734.12Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
A0A6J1WXK4_GALME4.820e-744.78Kv channel-interacting protein 1 n=3 Tax=Obtectome... [more]
A0A7R9JP07_TIMGE5.650e-734.67Hypothetical protein n=1 Tax=Timema genevievae Tax... [more]
A0A2A4J1H7_HELVI6.670e-744.78Uncharacterized protein (Fragment) n=1 Tax=Helioth... [more]
UPI000B369D8D8.060e-744.78Kv channel-interacting protein 1-like n=1 Tax=Heli... [more]
A0A7E5WTP2_TRINI8.300e-744.78Kv channel-interacting protein 1 isoform X2 n=2 Ta... [more]
A0A6J2JYB9_BOMMA8.460e-744.78Kv channel-interacting protein 1 isoform X1 n=25 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84762contigM-pyrifera_M_contig84762:161..427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score60.1
Seed ortholog evalue6.2e-07
Seed eggNOG ortholog34740.HMEL006653-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.EF hand
EggNOG OGs39R6Q@33154,3BES0@33208,3CYFK@33213,3SJT7@50557,41W5N@6656,4464J@7088,COG5126@1,COG5227@1,KOG0044@2759,KOG1769@2759
COG Functional cat.T
Best tax levelLepidoptera
Best eggNOG OGNA|NA|NA
Exons1
Model size267
Cds size267
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816754.4221597-CDS-M-pyrifera_M_contig84762:160..4271622816754.4221597-CDS-M-pyrifera_M_contig84762:160..427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84762 161..427 -
1692278158.5755591-CDS-M-pyrifera_M_contig84762:160..4271692278158.5755591-CDS-M-pyrifera_M_contig84762:160..427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84762 161..427 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84762.19748.1prot_M-pyrifera_M_contig84762.19748.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84762 161..427 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84762.19748.1

>prot_M-pyrifera_M_contig84762.19748.1 ID=prot_M-pyrifera_M_contig84762.19748.1|Name=mRNA_M-pyrifera_M_contig84762.19748.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
MLGELLDGEDFVGAKHSLLQRVFNALDYKRDGLVSLDEWRAGTAVLTKGS
VCERRRFGFALIDLDHDGYITEDDLAEAVLACHATLIRM
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mRNA from alignment at M-pyrifera_M_contig84762:161..427-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84762.19748.1 ID=mRNA_M-pyrifera_M_contig84762.19748.1|Name=mRNA_M-pyrifera_M_contig84762.19748.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig84762:161..427- (Macrocystis pyrifera P11B4 male)
ATGCTGGGGGAGCTGCTGGACGGCGAGGACTTCGTTGGAGCAAAGCATTC GCTGCTGCAGAGGGTGTTCAATGCGCTGGACTACAAGCGAGACGGCCTCG TCTCGCTGGACGAGTGGAGGGCTGGCACCGCCGTCTTGACAAAGGGCTCT GTTTGTGAGAGGCGGAGGTTCGGATTTGCTCTCATTGACCTGGACCACGA CGGCTACATCACAGAGGACGACCTGGCAGAGGCGGTGCTGGCGTGCCACG CCACGCTGATAAGGATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84762:161..427-

>mRNA_M-pyrifera_M_contig84762.19748.1 ID=mRNA_M-pyrifera_M_contig84762.19748.1|Name=mRNA_M-pyrifera_M_contig84762.19748.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig84762:161..427- (Macrocystis pyrifera P11B4 male)
ATGCTGGGGGAGCTGCTGGACGGCGAGGACTTCGTTGGAGCAAAGCATTC
GCTGCTGCAGAGGGTGTTCAATGCGCTGGACTACAAGCGAGACGGCCTCG
TCTCGCTGGACGAGTGGAGGGCTGGCACCGCCGTCTTGACAAAGGGCTCT
GTTTGTGAGAGGCGGAGGTTCGGATTTGCTCTCATTGACCTGGACCACGA
CGGCTACATCACAGAGGACGACCTGGCAGAGGCGGTGCTGGCGTGCCACG
CCACGCTGATAAGGATGATGCTGGGGGAGCTGCTGGACGGCGAGGACTTC
GTTGGAGCAAAGCATTCGCTGCTGCAGAGGGTGTTCAATGCGCTGGACTA
CAAGCGAGACGGCCTCGTCTCGCTGGACGAGTGGAGGGCTGGCACCGCCG
TCTTGACAAAGGGCTCTGTTTGTGAGAGGCGGAGGTTCGGATTTGCTCTC
ATTGACCTGGACCACGACGGCTACATCACAGAGGACGACCTGGCAGAGGC
GGTGCTGGCGTGCCACGCCACGCTGATAAGGATG
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