mRNA_M-pyrifera_M_contig84745.19744.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84745.19744.1
Unique NamemRNA_M-pyrifera_M_contig84745.19744.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig84745.19744.1 vs. uniprot
Match: D8LNC2_ECTSI (COP9 signalosome complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNC2_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 3.070e-12
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 QEREWDQACTAFFQSFKNYDEAGDPERLQVYTVVV 105
            QEREWDQACTAFFQSFKNYDEAGDPERLQV   +V
Sbjct:  275 QEREWDQACTAFFQSFKNYDEAGDPERLQVLKYLV 309
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BLAST of mRNA_M-pyrifera_M_contig84745.19744.1 vs. uniprot
Match: A0A7S2V1L2_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1L2_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 6.220e-7
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:    1 QEREWDQACTAFFQSFKNYDEAGDPERL 84
            QEREW+ ACT+FFQSFK YDEAG+P RL
Sbjct:   13 QEREWEHACTSFFQSFKMYDEAGEPRRL 40
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BLAST of mRNA_M-pyrifera_M_contig84745.19744.1 vs. uniprot
Match: A0A1D8NNR7_YARLL (PCI domain-containing protein n=5 Tax=Yarrowia TaxID=4951 RepID=A0A1D8NNR7_YARLL)

HSP 1 Score: 51.6 bits (122), Expect = 1.540e-6
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    4 EREWDQACTAFFQSFKNYDEAGDPERLQV--YTVVVS 108
            E+ WD+AC  FFQSFKNYDEAG P ++Q+  Y VV S
Sbjct:  271 EKRWDKACEEFFQSFKNYDEAGSPAKIQILKYLVVAS 307
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BLAST of mRNA_M-pyrifera_M_contig84745.19744.1 vs. uniprot
Match: A0A261Y4T6_9FUNG (COP9 signalosome complex subunit 2 n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y4T6_9FUNG)

HSP 1 Score: 51.2 bits (121), Expect = 2.120e-6
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    4 EREWDQACTAFFQSFKNYDEAGDPERLQVYTVVV 105
            E+EWD+A T FF+SFKNYDEAG P+R+QV   +V
Sbjct:  249 EKEWDKAQTDFFESFKNYDEAGSPQRIQVLKYLV 282
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BLAST of mRNA_M-pyrifera_M_contig84745.19744.1 vs. uniprot
Match: A0A397UQX1_9GLOM (COP9 signalosome complex subunit 2 n=14 Tax=Eukaryota TaxID=2759 RepID=A0A397UQX1_9GLOM)

HSP 1 Score: 51.2 bits (121), Expect = 2.120e-6
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    4 EREWDQACTAFFQSFKNYDEAGDPERLQVYTVVV 105
            E+EWD+A T FF+SFKNYDEAG P+R+QV   +V
Sbjct:  248 EKEWDKAQTDFFESFKNYDEAGSPQRIQVLKYLV 281
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BLAST of mRNA_M-pyrifera_M_contig84745.19744.1 vs. uniprot
Match: A0A433QQR2_9FUNG (Uncharacterized protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QQR2_9FUNG)

HSP 1 Score: 50.8 bits (120), Expect = 2.820e-6
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    4 EREWDQACTAFFQSFKNYDEAGDPERLQVYTVVV 105
            E EWD+A T FF+SFKNYDEAG P+R+QV   +V
Sbjct:  247 EEEWDKAQTDFFESFKNYDEAGSPQRIQVLNCLV 280
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BLAST of mRNA_M-pyrifera_M_contig84745.19744.1 vs. uniprot
Match: A0A8H7VRT4_9FUNG (COP9 signalosome complex subunit 2 n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7VRT4_9FUNG)

HSP 1 Score: 50.8 bits (120), Expect = 2.900e-6
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    4 EREWDQACTAFFQSFKNYDEAGDPERLQVYTVVV 105
            E+EWD A T FF+SFKNYDEAG P+R+QV   +V
Sbjct:  247 EKEWDMAQTDFFESFKNYDEAGSPQRIQVLKYLV 280
[Close]
BLAST of mRNA_M-pyrifera_M_contig84745.19744.1 vs. uniprot
Match: A0A433D801_9FUNG (COP9 signalosome complex subunit 2 n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433D801_9FUNG)

HSP 1 Score: 50.4 bits (119), Expect = 3.960e-6
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    4 EREWDQACTAFFQSFKNYDEAGDPERLQVYTVVV 105
            E EWD+A T FF+SFKNYDEAG P+R+QV   +V
Sbjct:  272 EEEWDKAQTDFFESFKNYDEAGSPQRIQVLKYLV 305
[Close]
BLAST of mRNA_M-pyrifera_M_contig84745.19744.1 vs. uniprot
Match: A0A433QQP7_9FUNG (Uncharacterized protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QQP7_9FUNG)

HSP 1 Score: 50.4 bits (119), Expect = 3.970e-6
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    4 EREWDQACTAFFQSFKNYDEAGDPERLQVYTVVV 105
            E EWD+A T FF+SFKNYDEAG P+R+QV   +V
Sbjct:  305 EEEWDKAQTDFFESFKNYDEAGSPQRIQVLKYLV 338
[Close]
BLAST of mRNA_M-pyrifera_M_contig84745.19744.1 vs. uniprot
Match: A0A8H7EU34_9FUNG (COP9 signalosome complex subunit 2 n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7EU34_9FUNG)

HSP 1 Score: 50.1 bits (118), Expect = 5.420e-6
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    4 EREWDQACTAFFQSFKNYDEAGDPERLQVYTVVV 105
            E++WD+A T FF+SFKNYDEAG P+R+QV   +V
Sbjct:  248 EKQWDKAQTDFFESFKNYDEAGSPQRIQVLKYLV 281
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84745.19744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNC2_ECTSI3.070e-1288.57COP9 signalosome complex subunit 2 n=2 Tax=Ectocar... [more]
A0A7S2V1L2_9STRA6.220e-778.57COP9 signalosome complex subunit 2 n=1 Tax=Fibroca... [more]
A0A1D8NNR7_YARLL1.540e-662.16PCI domain-containing protein n=5 Tax=Yarrowia Tax... [more]
A0A261Y4T6_9FUNG2.120e-664.71COP9 signalosome complex subunit 2 n=1 Tax=Bifigur... [more]
A0A397UQX1_9GLOM2.120e-664.71COP9 signalosome complex subunit 2 n=14 Tax=Eukary... [more]
A0A433QQR2_9FUNG2.820e-664.71Uncharacterized protein n=1 Tax=Jimgerdemannia fla... [more]
A0A8H7VRT4_9FUNG2.900e-664.71COP9 signalosome complex subunit 2 n=1 Tax=Mucor c... [more]
A0A433D801_9FUNG3.960e-664.71COP9 signalosome complex subunit 2 n=1 Tax=Jimgerd... [more]
A0A433QQP7_9FUNG3.970e-664.71Uncharacterized protein n=1 Tax=Jimgerdemannia fla... [more]
A0A8H7EU34_9FUNG5.420e-661.76COP9 signalosome complex subunit 2 n=1 Tax=Apophys... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84745contigM-pyrifera_M_contig84745:241..348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue9.1e-10
Seed eggNOG ortholog2880.D8LNC2
Preferred nameCOPS2
KEGG koko:K12176
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000122,GO:0000338,GO:0000715,GO:0000909,GO:0002009,GO:0003006,GO:0003674,GO:0003712,GO:0003714,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007282,GO:0007283,GO:0007292,GO:0007293,GO:0007399,GO:0007517,GO:0007519,GO:0008134,GO:0008150,GO:0008152,GO:0008180,GO:0008230,GO:0008231,GO:0008283,GO:0008356,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0014706,GO:0016043,GO:0016070,GO:0016333,GO:0016922,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0023052,GO:0030154,GO:0030163,GO:0030182,GO:0030582,GO:0030584,GO:0030718,GO:0030727,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031647,GO:0031935,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035257,GO:0035914,GO:0036099,GO:0036211,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043235,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044798,GO:0045892,GO:0045934,GO:0046483,GO:0046983,GO:0048134,GO:0048135,GO:0048138,GO:0048140,GO:0048142,GO:0048232,GO:0048468,GO:0048477,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048609,GO:0048646,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051427,GO:0051704,GO:0051716,GO:0060255,GO:0060429,GO:0060537,GO:0060538,GO:0060968,GO:0061061,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070646,GO:0070647,GO:0070791,GO:0071704,GO:0071840,GO:0075259,GO:0080090,GO:0090052,GO:0090054,GO:0090304,GO:0090575,GO:0097659,GO:0098727,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1902275,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.protein deneddylation
EggNOG OGsCOG5159@1,KOG1464@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons1
Model size108
Cds size108
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816754.2698867-CDS-M-pyrifera_M_contig84745:240..3481622816754.2698867-CDS-M-pyrifera_M_contig84745:240..348Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84745 241..348 +
1692278158.5047386-CDS-M-pyrifera_M_contig84745:240..3481692278158.5047386-CDS-M-pyrifera_M_contig84745:240..348Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84745 241..348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84745.19744.1prot_M-pyrifera_M_contig84745.19744.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84745 241..348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84745.19744.1

>prot_M-pyrifera_M_contig84745.19744.1 ID=prot_M-pyrifera_M_contig84745.19744.1|Name=mRNA_M-pyrifera_M_contig84745.19744.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=36bp
QEREWDQACTAFFQSFKNYDEAGDPERLQVYTVVVS
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mRNA from alignment at M-pyrifera_M_contig84745:241..348+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84745.19744.1 ID=mRNA_M-pyrifera_M_contig84745.19744.1|Name=mRNA_M-pyrifera_M_contig84745.19744.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=108bp|location=Sequence derived from alignment at M-pyrifera_M_contig84745:241..348+ (Macrocystis pyrifera P11B4 male)
CAGGAGAGGGAGTGGGACCAAGCCTGCACGGCGTTTTTTCAGAGCTTCAA
GAACTACGACGAGGCGGGCGACCCGGAACGATTACAGGTATATACGGTAG
TGGTCTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84745:241..348+

>mRNA_M-pyrifera_M_contig84745.19744.1 ID=mRNA_M-pyrifera_M_contig84745.19744.1|Name=mRNA_M-pyrifera_M_contig84745.19744.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig84745:241..348+ (Macrocystis pyrifera P11B4 male)
CAGGAGAGGGAGTGGGACCAAGCCTGCACGGCGTTTTTTCAGAGCTTCAA
GAACTACGACGAGGCGGGCGACCCGGAACGATTACAGGTATATACGGTAG
TGGTCTCCCAGGAGAGGGAGTGGGACCAAGCCTGCACGGCGTTTTTTCAG
AGCTTCAAGAACTACGACGAGGCGGGCGACCCGGAACGATTACAGGTATA
TACGGTAGTGGTCTCC
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