mRNA_M-pyrifera_M_contig84725.19742.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84725.19742.1
Unique NamemRNA_M-pyrifera_M_contig84725.19742.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84725.19742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84725contigM-pyrifera_M_contig84725:218..768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size551
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84725.19742.1prot_M-pyrifera_M_contig84725.19742.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84725 415..756 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816754.140381-UTR-M-pyrifera_M_contig84725:217..4141622816754.140381-UTR-M-pyrifera_M_contig84725:217..414Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84725 218..414 +
1692278158.4150531-UTR-M-pyrifera_M_contig84725:217..4141692278158.4150531-UTR-M-pyrifera_M_contig84725:217..414Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84725 218..414 +
1622816754.1629755-UTR-M-pyrifera_M_contig84725:756..7681622816754.1629755-UTR-M-pyrifera_M_contig84725:756..768Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84725 757..768 +
1692278158.4355733-UTR-M-pyrifera_M_contig84725:756..7681692278158.4355733-UTR-M-pyrifera_M_contig84725:756..768Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84725 757..768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816754.1518748-CDS-M-pyrifera_M_contig84725:414..7561622816754.1518748-CDS-M-pyrifera_M_contig84725:414..756Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84725 415..756 +
1692278158.4254286-CDS-M-pyrifera_M_contig84725:414..7561692278158.4254286-CDS-M-pyrifera_M_contig84725:414..756Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84725 415..756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84725.19742.1

>prot_M-pyrifera_M_contig84725.19742.1 ID=prot_M-pyrifera_M_contig84725.19742.1|Name=mRNA_M-pyrifera_M_contig84725.19742.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
MHVRFFPPTLRVRKVISRVVHQVNVVPNRLFTAYYAKHRPDYGRKYKYRI
KLRSAYFRKLLFLYYNESTQSVTIFARYSRQLYGSRAISQKARSVIPYNV
LSTRAVHTNGATE*
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mRNA from alignment at M-pyrifera_M_contig84725:218..768+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84725.19742.1 ID=mRNA_M-pyrifera_M_contig84725.19742.1|Name=mRNA_M-pyrifera_M_contig84725.19742.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=551bp|location=Sequence derived from alignment at M-pyrifera_M_contig84725:218..768+ (Macrocystis pyrifera P11B4 male)
ACTATACATGTGTGGGGGTTGCGGTTGTGACCACATTGTTGCACTTGGCT
GGATTGATACACGTAGTTCCTTGGTGGGTTCCTCGTGCGATATTTTGTCG
CGGAAGTAACAGTCGTTCTGTTTTACATATACATTATCCTGTCATGTGAT
GCCGAAAAACGCAGTGTCTGGCAGTCTCGAGAAAAATACAAGTATTGATG
CACGTTCGTTTTTTCCCCCCAACCTTACGTGTGAGAAAAGTAATATCAAG
AGTGGTACATCAGGTTAATGTGGTGCCGAATCGTTTGTTTACTGCCTACT
ACGCTAAACACCGTCCTGACTACGGTCGAAAATACAAATACAGAATCAAA
TTAAGGAGCGCGTACTTTCGTAAATTATTATTTCTGTATTACAATGAGTC
CACACAAAGCGTCACAATTTTCGCACGGTACTCTCGGCAATTGTATGGAA
GCCGAGCCATATCACAGAAAGCCAGATCAGTCATCCCATACAATGTGCTA
TCGACTCGTGCAGTACACACAAACGGAGCAACAGAGTAACATATATCAAT
C
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84725:218..768+

>mRNA_M-pyrifera_M_contig84725.19742.1 ID=mRNA_M-pyrifera_M_contig84725.19742.1|Name=mRNA_M-pyrifera_M_contig84725.19742.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig84725:218..768+ (Macrocystis pyrifera P11B4 male)
ATGCACGTTCGTTTTTTCCCCCCAACCTTACGTGTGAGAAAAGTAATATC
AAGAGTGGTACATCAGGTTAATGTGGTGCCGAATCGTTTGTTTACTGCCT
ACTACGCTAAACACCGTCCTGACTACGGTCGAAAATACAAATACAGAATC
AAATTAAGGAGCGCGTACTTTCGTAAATTATTATTTCTGTATTACAATGA
GTCCACACAAAGCGTCACAATTTTCGCACGGTACTCTCGGCAATTGTATG
GAAGCCGAGCCATATCACAGAAAGCCAGATCAGTCATCCCATACAATGTG
CTATCGACTCGTGCAGTACACACAAACGGAGCAACAGAGTAAATGCACGT
TCGTTTTTTCCCCCCAACCTTACGTGTGAGAAAAGTAATATCAAGAGTGG
TACATCAGGTTAATGTGGTGCCGAATCGTTTGTTTACTGCCTACTACGCT
AAACACCGTCCTGACTACGGTCGAAAATACAAATACAGAATCAAATTAAG
GAGCGCGTACTTTCGTAAATTATTATTTCTGTATTACAATGAGTCCACAC
AAAGCGTCACAATTTTCGCACGGTACTCTCGGCAATTGTATGGAAGCCGA
GCCATATCACAGAAAGCCAGATCAGTCATCCCATACAATGTGCTATCGAC
TCGTGCAGTACACACAAACGGAGCAACAGAGTAA
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