mRNA_M-pyrifera_M_contig84711.19740.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84711.19740.1
Unique NamemRNA_M-pyrifera_M_contig84711.19740.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84711.19740.1 vs. uniprot
Match: A0A1X2I488_9FUNG (Uncharacterized protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2I488_9FUNG)

HSP 1 Score: 63.2 bits (152), Expect = 5.720e-10
Identity = 28/92 (30.43%), Postives = 51/92 (55.43%), Query Frame = 1
Query:    1 MSGLARAMTGAARDASFIGLFVALVWRGVCAVRNA----------RTTDTTISPLVGSALCGLAILVQPSQRWNDLAVYITPRAISSASTRL 246
            +S L   +  + R ++F+  F+ L+W  +C  R               D T+ PL+GSA+CGL+++++   R  ++A+Y+ PRA+ S + RL
Sbjct:  106 ISSLQHILKASVRSSTFLATFITLIWYSICLTRTRIGHQLFGIKQTRLDDTLGPLIGSAMCGLSLMIENRHRRGEMALYVIPRALFSLTERL 197          
BLAST of mRNA_M-pyrifera_M_contig84711.19740.1 vs. uniprot
Match: A0A168PRK9_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168PRK9_ABSGL)

HSP 1 Score: 63.5 bits (153), Expect = 6.630e-10
Identity = 26/80 (32.50%), Postives = 47/80 (58.75%), Query Frame = 1
Query:   37 RDASFIGLFVALVWRGVCAVRNA----------RTTDTTISPLVGSALCGLAILVQPSQRWNDLAVYITPRAISSASTRL 246
            R ++F+  F+ L+W  +C  R            +  D T+ PL+GSA+CGL+++++   R  ++A+Y+ PRA+ S + RL
Sbjct:  329 RSSTFLATFITLIWYSICLTRTRLGHQLFGIQQKRLDDTLGPLIGSAMCGLSLMIENKHRRGEMALYVVPRALFSMTERL 408          
BLAST of mRNA_M-pyrifera_M_contig84711.19740.1 vs. uniprot
Match: A0A1X2J1U9_9FUNG (Uncharacterized protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2J1U9_9FUNG)

HSP 1 Score: 62.8 bits (151), Expect = 7.630e-10
Identity = 28/92 (30.43%), Postives = 51/92 (55.43%), Query Frame = 1
Query:    1 MSGLARAMTGAARDASFIGLFVALVWRGVCAVR----------NARTTDTTISPLVGSALCGLAILVQPSQRWNDLAVYITPRAISSASTRL 246
            +S L   +    R ++F+  ++ L+W  VC  R          +    D T+ PL+GSA+CGL+++++   R  ++A+Y+ PRA+ S + RL
Sbjct:  103 ISSLQHIVNSTVRSSTFLATYITLIWYSVCLTRTRIGHQLLGVDQNRLDHTLGPLIGSAMCGLSLIIENRHRRGEMALYVAPRALFSLTERL 194          
BLAST of mRNA_M-pyrifera_M_contig84711.19740.1 vs. uniprot
Match: A0A8H7BVN8_9FUNG (Uncharacterized protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BVN8_9FUNG)

HSP 1 Score: 62.8 bits (151), Expect = 1.240e-9
Identity = 28/92 (30.43%), Postives = 51/92 (55.43%), Query Frame = 1
Query:    1 MSGLARAMTGAARDASFIGLFVALVWRGVCAVRNA----------RTTDTTISPLVGSALCGLAILVQPSQRWNDLAVYITPRAISSASTRL 246
            +  +   +  + R ++F+  F+ ++W  VC VR               D T++P VGSALCGL++L++   R  ++A+Y+ PRA+ S + R+
Sbjct:  301 LQNMVHVLKASVRSSAFLASFITIIWYSVCLVRTRIGHQVLGVRQSILDDTLAPFVGSALCGLSLLIETRHRRGEMALYVVPRALYSFTERV 392          
BLAST of mRNA_M-pyrifera_M_contig84711.19740.1 vs. uniprot
Match: A0A163JZA1_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163JZA1_ABSGL)

HSP 1 Score: 56.6 bits (135), Expect = 1.840e-7
Identity = 25/80 (31.25%), Postives = 45/80 (56.25%), Query Frame = 1
Query:   34 ARDASFIGLFVALVWRGVCAVRNA---------RTTDTTISPLVGSALCGLAILVQPSQRWNDLAVYITPRAISSASTRL 246
            AR ++F+  + + +W  VC  R           +T   T+ P +GSA+CGL+++++   R  ++A+Y+ PRA+ S   RL
Sbjct:  369 ARSSTFLATYTSSIWYAVCLTRTRIGHQLLGLDQTRLDTLGPFIGSAICGLSLIIESPHRRGEMALYVAPRALFSFMERL 448          
BLAST of mRNA_M-pyrifera_M_contig84711.19740.1 vs. uniprot
Match: A0A194V256_9PEZI (Uncharacterized protein n=2 Tax=Valsa mali TaxID=105487 RepID=A0A194V256_9PEZI)

HSP 1 Score: 56.2 bits (134), Expect = 2.510e-7
Identity = 30/91 (32.97%), Postives = 49/91 (53.85%), Query Frame = 1
Query:   10 LARAMTGAARDASFIGLFVALVWRGVCAVRNA-------------RTTDTTISPLVGSALCGLAILVQPSQRWNDLAVYITPRAISSASTR 243
            L RA T A+R ++F+G F+ L + GVC  R               +  D+ I    G  LCG ++L++PS R  +LA+++ PRA+++   R
Sbjct:  350 LIRAFTSASRSSAFLGSFITLFYYGVCLARTRVGPHILGKDVSARQKIDSGICVGTGCFLCGWSVLLEPSSRRKELALFVAPRAVATVLPR 440          
BLAST of mRNA_M-pyrifera_M_contig84711.19740.1 vs. uniprot
Match: UPI001D04350F (uncharacterized protein n=1 Tax=Diaporthe batatas TaxID=748121 RepID=UPI001D04350F)

HSP 1 Score: 51.6 bits (122), Expect = 1.070e-5
Identity = 29/91 (31.87%), Postives = 47/91 (51.65%), Query Frame = 1
Query:   10 LARAMTGAARDASFIGLFVALVWRGVCAVRNA-------------RTTDTTISPLVGSALCGLAILVQPSQRWNDLAVYITPRAISSASTR 243
            L RA   A+R ++F+G F+ L + GVC  R               +  D      VG  LCG ++L++PS R  +LA+++ PRA+++   R
Sbjct:  374 LVRAFISASRSSAFLGSFITLFYYGVCLCRTRLGPHVLGKDTKARQKIDGGACIGVGCFLCGWSVLLEPSSRRKELALFVAPRAVATMLPR 464          
BLAST of mRNA_M-pyrifera_M_contig84711.19740.1 vs. uniprot
Match: A0A0G2HQT9_9PEZI (Putative integral membrane protein n=1 Tax=Diaporthe ampelina TaxID=1214573 RepID=A0A0G2HQT9_9PEZI)

HSP 1 Score: 50.8 bits (120), Expect = 1.700e-5
Identity = 28/89 (31.46%), Postives = 47/89 (52.81%), Query Frame = 1
Query:   16 RAMTGAARDASFIGLFVALVWRGVCA-------------VRNARTTDTTISPLVGSALCGLAILVQPSQRWNDLAVYITPRAISSASTR 243
            RA   A+R ++F+G F+ L + GVC              V+  +  D  I    G  LCG ++L++PS R  +LA+++ PRA+++   R
Sbjct:  131 RAFLSASRSSAFLGSFITLFYYGVCLSRTRFGPHIVGKDVKARQKIDGGICIGTGCFLCGWSVLLEPSSRRRELALFVAPRAVATILPR 219          
BLAST of mRNA_M-pyrifera_M_contig84711.19740.1 vs. uniprot
Match: A0A2P5I128_9PEZI (Uncharacterized protein n=1 Tax=Diaporthe helianthi TaxID=158607 RepID=A0A2P5I128_9PEZI)

HSP 1 Score: 50.8 bits (120), Expect = 2.010e-5
Identity = 27/89 (30.34%), Postives = 48/89 (53.93%), Query Frame = 1
Query:   16 RAMTGAARDASFIGLFVALVWRGVCAVRNA-------------RTTDTTISPLVGSALCGLAILVQPSQRWNDLAVYITPRAISSASTR 243
            RA   A+R ++F+G F+ L + GVC  R+              +  D+     +G  LCG ++L++PS R  +LA+++ PRA+++   R
Sbjct:  383 RAFKSASRSSAFLGSFITLFYYGVCLCRSRVGPRILGKDTKARQKIDSGACIGLGCFLCGWSVLLEPSSRRRELALFVAPRAVATMLPR 471          
BLAST of mRNA_M-pyrifera_M_contig84711.19740.1 vs. uniprot
Match: A0A060THX6_BLAAD (ARAD1D41602p n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060THX6_BLAAD)

HSP 1 Score: 50.4 bits (119), Expect = 2.710e-5
Identity = 25/84 (29.76%), Postives = 46/84 (54.76%), Query Frame = 1
Query:   16 RAMTGAARDASFIGLFVALVWRGVCAVRN-----------ARTTDTTISPLVGSALCGLAILVQPSQRWNDLAVYITPRAISSA 234
            R +  ++R ++F+  F+ L W  VC  R            A+  + +  P +GS  CGL+ L++  +R  +LA++++PRA+S A
Sbjct:  306 RVILSSSRSSAFLAAFITLNWYSVCIARTRLGPKLFPEATAQQVEDSWGPGLGSLTCGLSSLIETPKRRGELALFVSPRALSVA 389          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84711.19740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A1X2I488_9FUNG5.720e-1030.43Uncharacterized protein n=1 Tax=Absidia repens Tax... [more]
A0A168PRK9_ABSGL6.630e-1032.50Uncharacterized protein n=1 Tax=Absidia glauca Tax... [more]
A0A1X2J1U9_9FUNG7.630e-1030.43Uncharacterized protein n=1 Tax=Absidia repens Tax... [more]
A0A8H7BVN8_9FUNG1.240e-930.43Uncharacterized protein n=1 Tax=Apophysomyces ossi... [more]
A0A163JZA1_ABSGL1.840e-731.25Uncharacterized protein n=1 Tax=Absidia glauca Tax... [more]
A0A194V256_9PEZI2.510e-732.97Uncharacterized protein n=2 Tax=Valsa mali TaxID=1... [more]
UPI001D04350F1.070e-531.87uncharacterized protein n=1 Tax=Diaporthe batatas ... [more]
A0A0G2HQT9_9PEZI1.700e-531.46Putative integral membrane protein n=1 Tax=Diaport... [more]
A0A2P5I128_9PEZI2.010e-530.34Uncharacterized protein n=1 Tax=Diaporthe helianth... [more]
A0A060THX6_BLAAD2.710e-529.76ARAD1D41602p n=1 Tax=Blastobotrys adeninivorans Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84711contigM-pyrifera_M_contig84711:130..375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score70.9
Seed ortholog evalue3.2e-10
Seed eggNOG ortholog691883.XP_009495456.1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.integral membrane protein
EggNOG OGs39JE4@33154,KOG1398@1,KOG1398@2759
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size246
Cds size246
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816754.0780861-CDS-M-pyrifera_M_contig84711:129..3751622816754.0780861-CDS-M-pyrifera_M_contig84711:129..375Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84711 130..375 +
1692278158.388728-CDS-M-pyrifera_M_contig84711:129..3751692278158.388728-CDS-M-pyrifera_M_contig84711:129..375Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84711 130..375 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84711.19740.1prot_M-pyrifera_M_contig84711.19740.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84711 130..375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84711.19740.1

>prot_M-pyrifera_M_contig84711.19740.1 ID=prot_M-pyrifera_M_contig84711.19740.1|Name=mRNA_M-pyrifera_M_contig84711.19740.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
MSGLARAMTGAARDASFIGLFVALVWRGVCAVRNARTTDTTISPLVGSAL
CGLAILVQPSQRWNDLAVYITPRAISSASTRL
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mRNA from alignment at M-pyrifera_M_contig84711:130..375+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84711.19740.1 ID=mRNA_M-pyrifera_M_contig84711.19740.1|Name=mRNA_M-pyrifera_M_contig84711.19740.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig84711:130..375+ (Macrocystis pyrifera P11B4 male)
ATGTCAGGTCTAGCACGAGCCATGACAGGTGCTGCAAGAGATGCGTCTTT TATTGGATTGTTTGTAGCATTGGTGTGGAGAGGAGTGTGTGCGGTACGAA ATGCACGTACAACTGACACTACCATCAGTCCACTTGTGGGATCAGCACTA TGTGGGCTTGCAATCCTTGTACAACCATCCCAACGTTGGAATGACCTTGC TGTGTATATTACACCACGAGCAATTTCATCAGCATCCACTCGACTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84711:130..375+

>mRNA_M-pyrifera_M_contig84711.19740.1 ID=mRNA_M-pyrifera_M_contig84711.19740.1|Name=mRNA_M-pyrifera_M_contig84711.19740.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig84711:130..375+ (Macrocystis pyrifera P11B4 male)
ATGTCAGGTCTAGCACGAGCCATGACAGGTGCTGCAAGAGATGCGTCTTT
TATTGGATTGTTTGTAGCATTGGTGTGGAGAGGAGTGTGTGCGGTACGAA
ATGCACGTACAACTGACACTACCATCAGTCCACTTGTGGGATCAGCACTA
TGTGGGCTTGCAATCCTTGTACAACCATCCCAACGTTGGAATGACCTTGC
TGTGTATATTACACCACGAGCAATTTCATCAGCATCCACTCGACTTATGT
CAGGTCTAGCACGAGCCATGACAGGTGCTGCAAGAGATGCGTCTTTTATT
GGATTGTTTGTAGCATTGGTGTGGAGAGGAGTGTGTGCGGTACGAAATGC
ACGTACAACTGACACTACCATCAGTCCACTTGTGGGATCAGCACTATGTG
GGCTTGCAATCCTTGTACAACCATCCCAACGTTGGAATGACCTTGCTGTG
TATATTACACCACGAGCAATTTCATCAGCATCCACTCGACTT
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