mRNA_M-pyrifera_M_contig84710.19739.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84710.19739.1
Unique NamemRNA_M-pyrifera_M_contig84710.19739.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84710.19739.1 vs. uniprot
Match: A0A5A8EGU1_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EGU1_CAFRO)

HSP 1 Score: 93.2 bits (230), Expect = 2.960e-22
Identity = 53/104 (50.96%), Postives = 66/104 (63.46%), Query Frame = 1
Query:   10 TGEAHIAFSMAGLCSAGGAVAYLRTRSLASLLAGGGIGLLYAMSGALINGGRAKDGHMLGSAASAMLVGAMGPRFAKTRAVFPAGVLLGSGLAAGGYSGVKAYQ 321
            TG +H AF+MA L +  G   Y+  RS+ SL+AG   G +YA SG LIN GR + GH++G+ ASA LVG MGP++ KTRA FP GVL  SG   G Y   K  Q
Sbjct:    5 TGSSHAAFTMAALTAGLGVYGYMSKRSMPSLVAGVAFGAVYAASGYLINNGRDEYGHIVGAVASAALVGVMGPKYMKTRAAFPPGVLAVSGAVVGSYDTYKGVQ 108          
BLAST of mRNA_M-pyrifera_M_contig84710.19739.1 vs. uniprot
Match: A0A2P6TLM4_CHLSO (UPF0136 domain isoform A n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TLM4_CHLSO)

HSP 1 Score: 87.0 bits (214), Expect = 6.830e-20
Identity = 50/106 (47.17%), Postives = 63/106 (59.43%), Query Frame = 1
Query:   10 TGEAHIAFSMAGLCSAGGAVAYLRTRSLASLLAGGGIGLLYAMSGALINGGRAKDGHMLGSAASAMLVGAMGPRFAKTRAVFPAGVLLGSGLAAGGYSGVKAYQWI 327
            TG +H AF+MA LC   GA  Y +++S ASL AG GI  LY+  G  IN GR   GH L   AS  LVGAM PR+ KT+  +PAGV+  +G     Y G K  +W+
Sbjct:    5 TGSSHAAFTMAALCGVAGAAGYAKSKSTASLAAGLGIAALYSAGGYQINSGRPDVGHPLALVASIALVGAMAPRYLKTKKAWPAGVMAVAGALNVLYQGRKTQEWL 110          
BLAST of mRNA_M-pyrifera_M_contig84710.19739.1 vs. uniprot
Match: A0A7S0QC17_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QC17_9CRYP)

HSP 1 Score: 77.8 bits (190), Expect = 3.050e-16
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1
Query:    7 MTGEAHIAFSMAGLCSAGGAVAYLRTRSLASLLAGGGIGLLYAMSGALINGGRAKDGHMLGSAASAMLVGAMGPRFAKTRAVFPAGVLLGSGLAAGGYSGVKAYQW 324
            M G  H++F+MA L  +GG  A++R  S  SL+AG G+G L+A SG LI  G+ K+GH L   +S +L+G M PR  KT    PAG++   G  +  Y G K  +W
Sbjct:    7 MGGSEHMSFTMAALLVSGGTYAFVRKGSKMSLVAGCGVGALFAGSGLLIKAGQHKEGHGLALVSSLLLLGGMAPRAVKTGKFMPAGLVASLGALSALYQGKKVQEW 112          
BLAST of mRNA_M-pyrifera_M_contig84710.19739.1 vs. uniprot
Match: A0A2P6V118_9CHLO (Transmembrane s 14c isoform A n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V118_9CHLO)

HSP 1 Score: 75.1 bits (183), Expect = 4.040e-15
Identity = 45/110 (40.91%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   10 TGEAHIAFSMAGLCSAGGAVAYLRTRSLASLLAGGGIGLLYAMSGALINGGRAKDGHMLGSAASAMLVGAMGPRFAKTRAVFPAGVLLGSGLAAGGYSGVKAYQWIEAER 339
            TG  H+AF+MA + +AGG   +  + S  SL+AG G   L+ + GA I+ GR   GH L   AS  LVGAM PRFAKT+ ++PAGV+  +G  +    GV+  + +  ++
Sbjct:    5 TGSNHLAFTMAAITAAGGVQGWRASGSRPSLVAGLGNAALFGLGGAQISSGRPDIGHPLSLVASLALVGAMAPRFAKTKKLWPAGVMSVTGALSAACQGVETRELLSIQK 114          
BLAST of mRNA_M-pyrifera_M_contig84710.19739.1 vs. uniprot
Match: A0A6U4MPH7_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4MPH7_HEMAN)

HSP 1 Score: 74.3 bits (181), Expect = 6.600e-15
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1
Query:    7 MTGEAHIAFSMAGLCSAGGAVAYLRTRSLASLLAGGGIGLLYAMSGALINGGRAKDGHMLGSAASAMLVGAMGPRFAKTRAVFPAGVLLGSGLAAGGYSGVKAYQW 324
            M G  H++ +M  L +AGGA A+ +  S ASL+ G G G L+ +S  L+N G+ ++GHM+  A+S  LV  M PR   ++   PAG++   GL +  Y G K  +W
Sbjct:    2 MGGSQHMSLTMGVLMTAGGAYAFFKKGSKASLIGGAGTGALFFLSAGLLNAGQNRNGHMVALASSVALVAGMAPRAYASKKFMPAGLVATLGLLSSAYQGKKTIEW 107          
BLAST of mRNA_M-pyrifera_M_contig84710.19739.1 vs. uniprot
Match: A0A2T9Y1N4_9FUNG (Uncharacterized protein n=2 Tax=Harpellales TaxID=61421 RepID=A0A2T9Y1N4_9FUNG)

HSP 1 Score: 69.7 bits (169), Expect = 3.740e-13
Identity = 47/103 (45.63%), Postives = 63/103 (61.17%), Query Frame = 1
Query:   22 HIAFSMAGLCSAGGAVAYLRTRSLASLLAGGGIGLLYAMSGALI--NGGRAKDGHMLGSAASAMLVGAMGPRFAKTRAVFPAGVLLGSGLAAGGYSGVKAYQW 324
            HIA SMA  C+AGG + Y +T S+ SL+AG GIG LYA SG  I  NG     G+ +   AS +L+GAMGP+  +T    P  + +  GLA+G Y   KAY++
Sbjct:    4 HIALSMAAACTAGGLIGYFKTGSVISLVAGAGIGALYAYSGLEIKKNG---NHGYDMAVGASLLLLGAMGPKAIRTLKPVPTTMSI-LGLASGAYYSKKAYEF 102          
BLAST of mRNA_M-pyrifera_M_contig84710.19739.1 vs. uniprot
Match: A0A0D1E961_USTMA (Uncharacterized protein n=9 Tax=Ustilaginales TaxID=5267 RepID=A0A0D1E961_USTMA)

HSP 1 Score: 68.6 bits (166), Expect = 9.580e-13
Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = 1
Query:   22 HIAFSMAGLCSAGGAVAYLRTRSLASLLAGGGIGLLYAMSGALI-NGGRAKDGHMLGSAASAMLVGAMGPRFAKTRAVFPAGVLLGSGLAAGGYSGVKAYQW 324
            H AF+MAGLCS GG + + +TRS+ SL+AG G+G LYA++   I NGG    G+ + + ASA+L+G+  PRF K     P G+ L S LA   Y G K Y +
Sbjct:    4 HPAFTMAGLCSIGGLIGFAKTRSIPSLVAGVGVGALYALAATRIKNGG--DYGYEIATGASALLMGSSAPRFRK--GPVPMGLTLTSALALA-YYGKKVYDF 100          
BLAST of mRNA_M-pyrifera_M_contig84710.19739.1 vs. uniprot
Match: A0A077QQT8_9BASI (Uncharacterized protein n=1 Tax=Melanopsichium pennsylvanicum 4 TaxID=1398559 RepID=A0A077QQT8_9BASI)

HSP 1 Score: 67.8 bits (164), Expect = 1.920e-12
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 1
Query:   22 HIAFSMAGLCSAGGAVAYLRTRSLASLLAGGGIGLLYAMSGALI-NGGRAKDGHMLGSAASAMLVGAMGPRFAKTRAVFPAGVLLGSGLAAGGYSGVKAYQW 324
            H AF+MA LCS GGA+ + +TRSL SL+AG G+G LYA +   I NGG  + G+ + + ASA+L+G+  PRF K         L  + + A GY G K Y +
Sbjct:    4 HPAFTMAALCSVGGAIGFAKTRSLPSLIAGVGVGALYAFAATRIKNGG--EYGYEIAAGASALLMGSSAPRFRKGPVPM---ALTATSILALGYYGKKVYDF 100          
BLAST of mRNA_M-pyrifera_M_contig84710.19739.1 vs. uniprot
Match: A0A4P9Y0G2_9FUNG (Transmembrane proteins 14C-domain-containing protein n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y0G2_9FUNG)

HSP 1 Score: 65.5 bits (158), Expect = 1.690e-11
Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = 1
Query:   22 HIAFSMAGLCSAGGAVAYLRTRSLASLLAGGGIGLLYAMSGALINGGRAKD-GHMLGSAASAMLVGAMGPRFAKTRAVFPAGVLLGS-GLAAGGYSGVKAYQ 321
            H  +S+A LC+ GG V + RT S  SL+AG G+GLLY +SG LI   + KD GH L +  SA+L+GA+ PR  + R   P  ++LGS G+   GY   KAY+
Sbjct:    4 HTPYSLAALCATGGIVGFARTGSKPSLVAGLGLGLLYGVSGYLIQ--KNKDHGHDLAAVTSAVLMGALLPRGLRQRKAMP--LVLGSVGVLGLGYHSRKAYE 101          
BLAST of mRNA_M-pyrifera_M_contig84710.19739.1 vs. uniprot
Match: A0A5C3F2C0_9BASI (Related to UPF0136 membrane protein YJR085C n=1 Tax=Pseudozyma flocculosa TaxID=84751 RepID=A0A5C3F2C0_9BASI)

HSP 1 Score: 65.1 bits (157), Expect = 2.170e-11
Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = 1
Query:   22 HIAFSMAGLCSAGGAVAYLRTRSLASLLAGGGIGLLYAMSGALINGGRAKDGHMLGSAASAMLVGAMGPRFAKTRAVFPAGVLLGSGLAAGGYSGVKAYQW 324
            HIAF+M+GLC  GG + + +TRS+ SL+AG G+G LYA+S   I  G  + G+ + +A SA+L+G+  PRF K     P  + + S LA   Y G K Y +
Sbjct:    4 HIAFTMSGLCGVGGLIGFAKTRSIPSLIAGVGVGALYALSANRIRTG-GEYGYEMAAATSAVLLGSSAPRFVK--GPVPKALTVTSVLALA-YYGKKVYDF 100          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84710.19739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8EGU1_CAFRO2.960e-2250.96Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
A0A2P6TLM4_CHLSO6.830e-2047.17UPF0136 domain isoform A n=1 Tax=Chlorella sorokin... [more]
A0A7S0QC17_9CRYP3.050e-1642.45Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A2P6V118_9CHLO4.040e-1540.91Transmembrane s 14c isoform A n=1 Tax=Micractinium... [more]
A0A6U4MPH7_HEMAN6.600e-1538.68Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A2T9Y1N4_9FUNG3.740e-1345.63Uncharacterized protein n=2 Tax=Harpellales TaxID=... [more]
A0A0D1E961_USTMA9.580e-1346.08Uncharacterized protein n=9 Tax=Ustilaginales TaxI... [more]
A0A077QQT8_9BASI1.920e-1244.12Uncharacterized protein n=1 Tax=Melanopsichium pen... [more]
A0A4P9Y0G2_9FUNG1.690e-1146.08Transmembrane proteins 14C-domain-containing prote... [more]
A0A5C3F2C0_9BASI2.170e-1142.57Related to UPF0136 membrane protein YJR085C n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84710contigM-pyrifera_M_contig84710:523..867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue2.3e-11
Seed eggNOG ortholog55529.EKX44887
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Transmembrane proteins 14C
EggNOG OGs2E0W0@1,2S89G@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size345
Cds size339
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816754.03273-CDS-M-pyrifera_M_contig84710:522..8611622816754.03273-CDS-M-pyrifera_M_contig84710:522..861Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84710 523..861 -
1692278158.3602686-CDS-M-pyrifera_M_contig84710:522..8611692278158.3602686-CDS-M-pyrifera_M_contig84710:522..861Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84710 523..861 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816754.044786-UTR-M-pyrifera_M_contig84710:861..8671622816754.044786-UTR-M-pyrifera_M_contig84710:861..867Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84710 862..867 -
1692278158.3749158-UTR-M-pyrifera_M_contig84710:861..8671692278158.3749158-UTR-M-pyrifera_M_contig84710:861..867Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84710 862..867 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84710.19739.1prot_M-pyrifera_M_contig84710.19739.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84710 523..861 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84710.19739.1

>prot_M-pyrifera_M_contig84710.19739.1 ID=prot_M-pyrifera_M_contig84710.19739.1|Name=mRNA_M-pyrifera_M_contig84710.19739.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
MTGEAHIAFSMAGLCSAGGAVAYLRTRSLASLLAGGGIGLLYAMSGALIN
GGRAKDGHMLGSAASAMLVGAMGPRFAKTRAVFPAGVLLGSGLAAGGYSG
VKAYQWIEAERD*
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mRNA from alignment at M-pyrifera_M_contig84710:523..867-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84710.19739.1 ID=mRNA_M-pyrifera_M_contig84710.19739.1|Name=mRNA_M-pyrifera_M_contig84710.19739.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig84710:523..867- (Macrocystis pyrifera P11B4 male)
CTTCCGATGACTGGCGAGGCACATATTGCGTTTTCGATGGCTGGGCTGTG CAGCGCAGGGGGCGCGGTGGCCTACTTGAGGACTCGTTCCTTGGCGTCCT TGCTTGCTGGTGGGGGCATTGGGCTCTTGTACGCGATGAGCGGGGCTCTG ATCAACGGCGGGAGGGCCAAAGACGGGCACATGCTGGGCTCCGCAGCCTC CGCCATGCTCGTGGGGGCCATGGGCCCTCGATTCGCCAAAACCAGGGCTG TCTTCCCCGCAGGCGTGCTCCTCGGCTCTGGACTCGCGGCCGGCGGGTAC TCTGGCGTCAAAGCATACCAATGGATCGAAGCTGAAAGGGACTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84710:523..867-

>mRNA_M-pyrifera_M_contig84710.19739.1 ID=mRNA_M-pyrifera_M_contig84710.19739.1|Name=mRNA_M-pyrifera_M_contig84710.19739.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig84710:523..867- (Macrocystis pyrifera P11B4 male)
ATGACTGGCGAGGCACATATTGCGTTTTCGATGGCTGGGCTGTGCAGCGC
AGGGGGCGCGGTGGCCTACTTGAGGACTCGTTCCTTGGCGTCCTTGCTTG
CTGGTGGGGGCATTGGGCTCTTGTACGCGATGAGCGGGGCTCTGATCAAC
GGCGGGAGGGCCAAAGACGGGCACATGCTGGGCTCCGCAGCCTCCGCCAT
GCTCGTGGGGGCCATGGGCCCTCGATTCGCCAAAACCAGGGCTGTCTTCC
CCGCAGGCGTGCTCCTCGGCTCTGGACTCGCGGCCGGCGGGTACTCTGGC
GTCAAAGCATACCAATGGATCGAAGCTGAAAGGGACTAAATGACTGGCGA
GGCACATATTGCGTTTTCGATGGCTGGGCTGTGCAGCGCAGGGGGCGCGG
TGGCCTACTTGAGGACTCGTTCCTTGGCGTCCTTGCTTGCTGGTGGGGGC
ATTGGGCTCTTGTACGCGATGAGCGGGGCTCTGATCAACGGCGGGAGGGC
CAAAGACGGGCACATGCTGGGCTCCGCAGCCTCCGCCATGCTCGTGGGGG
CCATGGGCCCTCGATTCGCCAAAACCAGGGCTGTCTTCCCCGCAGGCGTG
CTCCTCGGCTCTGGACTCGCGGCCGGCGGGTACTCTGGCGTCAAAGCATA
CCAATGGATCGAAGCTGAAAGGGACTAA
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