mRNA_M-pyrifera_M_contig84695.19736.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84695.19736.1
Unique NamemRNA_M-pyrifera_M_contig84695.19736.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84695.19736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84695contigM-pyrifera_M_contig84695:57..461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816753.9230332-CDS-M-pyrifera_M_contig84695:56..4611622816753.9230332-CDS-M-pyrifera_M_contig84695:56..461Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84695 57..461 -
1692278158.3012445-CDS-M-pyrifera_M_contig84695:56..4611692278158.3012445-CDS-M-pyrifera_M_contig84695:56..461Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84695 57..461 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84695.19736.1prot_M-pyrifera_M_contig84695.19736.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84695 57..461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84695.19736.1

>prot_M-pyrifera_M_contig84695.19736.1 ID=prot_M-pyrifera_M_contig84695.19736.1|Name=mRNA_M-pyrifera_M_contig84695.19736.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
DPTTLELFDQSLIYQLTPEDPHYPVDLAGKALFAVSQITDLYRAYQHAEK
IIIPALKNNGIKNTAAQQLVVWLNEIHGHAANTLAQQDHTHRNSLAGNYT
PLQITRWKPNSKIGNIFYSYVKYREQKTQGEARLI
back to top

mRNA from alignment at M-pyrifera_M_contig84695:57..461-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84695.19736.1 ID=mRNA_M-pyrifera_M_contig84695.19736.1|Name=mRNA_M-pyrifera_M_contig84695.19736.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=405bp|location=Sequence derived from alignment at M-pyrifera_M_contig84695:57..461- (Macrocystis pyrifera P11B4 male)
GACCCAACAACACTAGAACTGTTTGATCAAAGCTTAATTTATCAGCTAAC
TCCTGAAGACCCACACTACCCTGTCGACTTAGCGGGCAAAGCCTTGTTTG
CAGTAAGTCAAATTACAGATCTCTATCGAGCATACCAGCATGCGGAAAAA
ATAATTATTCCTGCGCTAAAAAACAATGGCATCAAGAATACCGCGGCTCA
ACAATTAGTTGTCTGGCTAAATGAGATTCACGGCCACGCTGCAAACACGC
TTGCACAACAAGACCATACACACAGAAACTCGCTTGCTGGAAATTATACG
CCATTACAGATAACAAGGTGGAAGCCAAACTCAAAAATAGGCAATATTTT
TTATAGTTACGTGAAATACCGCGAGCAAAAGACTCAAGGGGAGGCACGAC
TTATC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig84695:57..461-

>mRNA_M-pyrifera_M_contig84695.19736.1 ID=mRNA_M-pyrifera_M_contig84695.19736.1|Name=mRNA_M-pyrifera_M_contig84695.19736.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig84695:57..461- (Macrocystis pyrifera P11B4 male)
GACCCAACAACACTAGAACTGTTTGATCAAAGCTTAATTTATCAGCTAAC
TCCTGAAGACCCACACTACCCTGTCGACTTAGCGGGCAAAGCCTTGTTTG
CAGTAAGTCAAATTACAGATCTCTATCGAGCATACCAGCATGCGGAAAAA
ATAATTATTCCTGCGCTAAAAAACAATGGCATCAAGAATACCGCGGCTCA
ACAATTAGTTGTCTGGCTAAATGAGATTCACGGCCACGCTGCAAACACGC
TTGCACAACAAGACCATACACACAGAAACTCGCTTGCTGGAAATTATACG
CCATTACAGATAACAAGGTGGAAGCCAAACTCAAAAATAGGCAATATTTT
TTATAGTTACGTGAAATACCGCGAGCAAAAGACTCAAGGGGAGGCACGAC
TTATCGACCCAACAACACTAGAACTGTTTGATCAAAGCTTAATTTATCAG
CTAACTCCTGAAGACCCACACTACCCTGTCGACTTAGCGGGCAAAGCCTT
GTTTGCAGTAAGTCAAATTACAGATCTCTATCGAGCATACCAGCATGCGG
AAAAAATAATTATTCCTGCGCTAAAAAACAATGGCATCAAGAATACCGCG
GCTCAACAATTAGTTGTCTGGCTAAATGAGATTCACGGCCACGCTGCAAA
CACGCTTGCACAACAAGACCATACACACAGAAACTCGCTTGCTGGAAATT
ATACGCCATTACAGATAACAAGGTGGAAGCCAAACTCAAAAATAGGCAAT
ATTTTTTATAGTTACGTGAAATACCGCGAGCAAAAGACTCAAGGGGAGGC
ACGACTTATC
back to top