mRNA_M-pyrifera_M_contig84680.19735.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84680.19735.1
Unique NamemRNA_M-pyrifera_M_contig84680.19735.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig84680.19735.1 vs. uniprot
Match: D8LQA2_ECTSI (Cationic amino acid transporter-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQA2_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 5.010e-18
Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    7 KMAVCAFIIIAGLALFQGDNLVPFAPMGTSGLVRGSAAAFFGYLGYDEVC 156
            KMAVC FII+ GLALF   N++PFAPMG +G++RGS+AAFFGYLGYDEVC
Sbjct:  213 KMAVCIFIIVGGLALFDPGNMLPFAPMGVAGVIRGSSAAFFGYLGYDEVC 262
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BLAST of mRNA_M-pyrifera_M_contig84680.19735.1 vs. uniprot
Match: A0A485LN37_9STRA (Aste57867_23172 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LN37_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 7.630e-11
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    7 KMAVCAFIIIAGLALFQGDNLVPFAP--------MGTSGLVRGSAAAFFGYLGYDEVC 156
            K+AV  FII+AG A  +GDNL PF P         GTSG++ G+++AFFGY+G+DEVC
Sbjct:  185 KVAVVLFIIVAGFAATKGDNLTPFLPPRSEDDTMYGTSGMLLGASSAFFGYVGFDEVC 242
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BLAST of mRNA_M-pyrifera_M_contig84680.19735.1 vs. uniprot
Match: W2H4J8_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2H4J8_PHYPR)

HSP 1 Score: 63.5 bits (153), Expect = 1.900e-10
Identity = 31/60 (51.67%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:    7 KMAVCAFIIIAGLALFQGDNLVPFAP----------MGTSGLVRGSAAAFFGYLGYDEVC 156
            KMAV AFIIIAG A    DNL PF P           GT G++ G++ AFFGY+G+DE+C
Sbjct:   22 KMAVVAFIIIAGFAAMNPDNLSPFVPTRSELDGTMTFGTQGIITGASQAFFGYVGFDEIC 81
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BLAST of mRNA_M-pyrifera_M_contig84680.19735.1 vs. uniprot
Match: W2PD13_PHYPN (AA_permease_C domain-containing protein n=16 Tax=Phytophthora TaxID=4783 RepID=W2PD13_PHYPN)

HSP 1 Score: 63.5 bits (153), Expect = 1.950e-10
Identity = 31/60 (51.67%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:    7 KMAVCAFIIIAGLALFQGDNLVPFAP----------MGTSGLVRGSAAAFFGYLGYDEVC 156
            KMAV AFIIIAG A    DNL PF P           GT G++ G++ AFFGY+G+DE+C
Sbjct:  186 KMAVVAFIIIAGFAAMNPDNLSPFVPTRSELDGTMTFGTQGIITGASQAFFGYVGFDEIC 245
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BLAST of mRNA_M-pyrifera_M_contig84680.19735.1 vs. uniprot
Match: H3GQA0_PHYRM (AA_permease_C domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=H3GQA0_PHYRM)

HSP 1 Score: 62.4 bits (150), Expect = 4.970e-10
Identity = 31/60 (51.67%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:    7 KMAVCAFIIIAGLALFQGDNLVPFAP----------MGTSGLVRGSAAAFFGYLGYDEVC 156
            KM V AFIIIAG A    DNL PF P           GT G++ G++ AFFGY+G+DEVC
Sbjct:  149 KMGVVAFIIIAGFAAMNPDNLSPFVPTRTELDGTMTFGTQGIITGASQAFFGYVGFDEVC 208
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BLAST of mRNA_M-pyrifera_M_contig84680.19735.1 vs. uniprot
Match: A0A485KT68_9STRA (Aste57867_11508 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KT68_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.980e-10
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    7 KMAVCAFIIIAGLALFQGDNLVPFAP--------MGTSGLVRGSAAAFFGYLGYDEVC 156
            K+AV  FII+AG A  +GDNL P+ P         GT G++ G+++AFFGY+G+DEVC
Sbjct:  185 KVAVVLFIIVAGFAATKGDNLTPYIPPRTADGSAFGTQGMLLGASSAFFGYVGFDEVC 242
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BLAST of mRNA_M-pyrifera_M_contig84680.19735.1 vs. uniprot
Match: A0A3M6VRV7_9STRA (AA_permease_C domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VRV7_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.270e-9
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:    7 KMAVCAFIIIAGLALFQGDNLVPFAP----------MGTSGLVRGSAAAFFGYLGYDEVC 156
            KM+V AFIII G A  + DN+ PF P           GT G++ G++ AFFGY+G+DEVC
Sbjct:  187 KMSVVAFIIIVGFAAMEPDNMSPFIPTRIDLNGAMAFGTQGIITGASQAFFGYIGFDEVC 246
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BLAST of mRNA_M-pyrifera_M_contig84680.19735.1 vs. uniprot
Match: H3GXW0_PHYRM (AA_permease_C domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GXW0_PHYRM)

HSP 1 Score: 60.5 bits (145), Expect = 2.380e-9
Identity = 29/60 (48.33%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:    7 KMAVCAFIIIAGLALFQGDNLVPFAP----------MGTSGLVRGSAAAFFGYLGYDEVC 156
            K+ V  FIIIAG AL    NL PF P           GT G++ G+++AFFGY+G+DEVC
Sbjct:  191 KVVVVLFIIIAGFALMDSSNLSPFVPPRQDVDGTMAFGTQGIITGASSAFFGYIGFDEVC 250
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BLAST of mRNA_M-pyrifera_M_contig84680.19735.1 vs. uniprot
Match: A0A3F2RR81_9STRA (Uncharacterized protein n=5 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RR81_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.390e-9
Identity = 29/60 (48.33%), Postives = 36/60 (60.00%), Query Frame = 1 
Query:    7 KMAVCAFIIIAGLALFQGDNLVPFAP----------MGTSGLVRGSAAAFFGYLGYDEVC 156
            KM V  FIIIAG A    DNL PF P           GT G++ G++ AFFGY+G+DE+C
Sbjct:  191 KMCVVVFIIIAGFAALNPDNLSPFVPTRTELDGTMAFGTQGIITGASQAFFGYVGFDEIC 250
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BLAST of mRNA_M-pyrifera_M_contig84680.19735.1 vs. uniprot
Match: A0A485LM67_9STRA (Aste57867_23173 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LM67_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.250e-9
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    7 KMAVCAFIIIAGLALFQGDNLVPFAP--------MGTSGLVRGSAAAFFGYLGYDEVC 156
            K+AV  FII+AG A  + DNL PF P         GT G++ G+++AFFGY+G+DEVC
Sbjct:  183 KVAVVLFIIVAGFAATKVDNLTPFVPPLSDDGTMFGTQGVLLGASSAFFGYVGFDEVC 240
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84680.19735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQA2_ECTSI5.010e-1874.00Cationic amino acid transporter-like protein n=2 T... [more]
A0A485LN37_9STRA7.630e-1153.45Aste57867_23172 protein n=1 Tax=Aphanomyces stella... [more]
W2H4J8_PHYPR1.900e-1051.67Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
W2PD13_PHYPN1.950e-1051.67AA_permease_C domain-containing protein n=16 Tax=P... [more]
H3GQA0_PHYRM4.970e-1051.67AA_permease_C domain-containing protein n=6 Tax=Ph... [more]
A0A485KT68_9STRA4.980e-1050.00Aste57867_11508 protein n=1 Tax=Aphanomyces stella... [more]
A0A3M6VRV7_9STRA1.270e-948.33AA_permease_C domain-containing protein n=1 Tax=Pe... [more]
H3GXW0_PHYRM2.380e-948.33AA_permease_C domain-containing protein n=1 Tax=Ph... [more]
A0A3F2RR81_9STRA2.390e-948.33Uncharacterized protein n=5 Tax=Phytophthora kerno... [more]
A0A485LM67_9STRA3.250e-950.00Aste57867_23173 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84680contigM-pyrifera_M_contig84680:293..448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue1.1e-13
Seed eggNOG ortholog2880.D8LQA2
KEGG koko:K03294
KEGG TC2.A.3.2
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0016020,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805
EggNOG free text desc.amino acid transport
EggNOG OGsCOG0531@1,KOG1286@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size156
Cds size147
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816753.8697395-UTR-M-pyrifera_M_contig84680:292..3011622816753.8697395-UTR-M-pyrifera_M_contig84680:292..301Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84680 293..301 +
1692278158.2795613-UTR-M-pyrifera_M_contig84680:292..3011692278158.2795613-UTR-M-pyrifera_M_contig84680:292..301Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84680 293..301 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816753.8851988-CDS-M-pyrifera_M_contig84680:301..4481622816753.8851988-CDS-M-pyrifera_M_contig84680:301..448Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84680 302..448 +
1692278158.2915869-CDS-M-pyrifera_M_contig84680:301..4481692278158.2915869-CDS-M-pyrifera_M_contig84680:301..448Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84680 302..448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84680.19735.1prot_M-pyrifera_M_contig84680.19735.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84680 302..448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84680.19735.1

>prot_M-pyrifera_M_contig84680.19735.1 ID=prot_M-pyrifera_M_contig84680.19735.1|Name=mRNA_M-pyrifera_M_contig84680.19735.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
MAVCAFIIIAGLALFQGDNLVPFAPMGTSGLVRGSAAAFFGYLGYDEVC
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mRNA from alignment at M-pyrifera_M_contig84680:293..448+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84680.19735.1 ID=mRNA_M-pyrifera_M_contig84680.19735.1|Name=mRNA_M-pyrifera_M_contig84680.19735.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=156bp|location=Sequence derived from alignment at M-pyrifera_M_contig84680:293..448+ (Macrocystis pyrifera P11B4 male)
CTGCAAAAGATGGCTGTTTGCGCGTTCATCATAATTGCGGGGCTGGCGCT
GTTCCAAGGTGACAACTTGGTACCCTTCGCGCCCATGGGGACTTCTGGCC
TCGTCAGGGGATCGGCGGCGGCGTTCTTCGGCTACTTGGGGTATGATGAG
GTATGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84680:293..448+

>mRNA_M-pyrifera_M_contig84680.19735.1 ID=mRNA_M-pyrifera_M_contig84680.19735.1|Name=mRNA_M-pyrifera_M_contig84680.19735.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig84680:293..448+ (Macrocystis pyrifera P11B4 male)
ATGGCTGTTTGCGCGTTCATCATAATTGCGGGGCTGGCGCTGTTCCAAGG
TGACAACTTGGTACCCTTCGCGCCCATGGGGACTTCTGGCCTCGTCAGGG
GATCGGCGGCGGCGTTCTTCGGCTACTTGGGGTATGATGAGGTATGTATG
GCTGTTTGCGCGTTCATCATAATTGCGGGGCTGGCGCTGTTCCAAGGTGA
CAACTTGGTACCCTTCGCGCCCATGGGGACTTCTGGCCTCGTCAGGGGAT
CGGCGGCGGCGTTCTTCGGCTACTTGGGGTATGATGAGGTATGT
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