mRNA_M-pyrifera_M_contig84641.19732.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84641.19732.1
Unique NamemRNA_M-pyrifera_M_contig84641.19732.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84641.19732.1 vs. uniprot
Match: UPI0012EC0CF8 (HAD domain-containing protein n=2 Tax=unclassified Methylocaldum TaxID=2622260 RepID=UPI0012EC0CF8)

HSP 1 Score: 108 bits (269), Expect = 2.910e-27
Identity = 56/134 (41.79%), Postives = 73/134 (54.48%), Query Frame = 1
Query:    1 ALFLDFDGVLHRGNSGTLRHLPILEQYLHRWPDVGVVVISDWRIGATLESLKGYFSDEFRPRVFARTAEYPAGPNQRQEEVQDMVRRAGIHHYLVIDDDPDLYSPQFEPLLCPDPGEGLTSSDLERVGERITSW 402
            ALFLDFDGVLH   S T R+LP  E  L  +PD+ +V+ S+WR G   + L  YFS  FR R+   TA  P GP  RQ E++   R  GI  +L IDDD  L+ P    L+     E L      R+ +R+ +W
Sbjct:   19 ALFLDFDGVLHPSQSATFRYLPAFEATLRGYPDIDIVISSNWREGEPFDELLDYFSAGFRDRLIGATAVLP-GPYSRQREIEAYCRSFGIERWLAIDDDGTLFVPGCPQLILLSRNEALDEVGRRRLADRLAAW 151          
BLAST of mRNA_M-pyrifera_M_contig84641.19732.1 vs. uniprot
Match: A0A2T1AAI1_9RHOB (Type IV conjugative transfer system coupling protein TraD n=3 Tax=Tritonibacter TaxID=2083206 RepID=A0A2T1AAI1_9RHOB)

HSP 1 Score: 90.1 bits (222), Expect = 2.710e-18
Identity = 52/131 (39.69%), Postives = 71/131 (54.20%), Query Frame = 1
Query:    1 ALFLDFDGVLHRGNSGTLRHLPILEQYLHRWPDVGVVVISDWRIGATLESLKGYFSDEFRPRVFARTAEYPAGPNQRQEEVQDMVRRAGIHHYLVIDDDPDLYSPQFEPLLCPDPGEGLTSSDLERVGERI 393
            A+FLDFDGVLH+G SGT   LP+LEQ+L +  DV VV+ S WR  A  + L+  FS + R R+   T      P  R  E+       G+  Y+ +DDD  L+   +  LL  D  +GL   D+ R+ E I
Sbjct:  731 AIFLDFDGVLHKGTSGTFNKLPLLEQFLRQNDDVDVVISSSWRT-ADQDYLERLFSSDLRHRLIGTTIPENTVPT-RNMEIDLWAGTYGVKSYVALDDDATLFDSAWPHLLQTDGSKGLQPDDIHRLEEWI 859          
BLAST of mRNA_M-pyrifera_M_contig84641.19732.1 vs. uniprot
Match: A0A154QYC1_9GAMM (Uncharacterized protein n=1 Tax=Rhodanobacter sp. FW510-R10 TaxID=1524462 RepID=A0A154QYC1_9GAMM)

HSP 1 Score: 84.0 bits (206), Expect = 1.650e-17
Identity = 46/136 (33.82%), Postives = 68/136 (50.00%), Query Frame = 1
Query:    1 ALFLDFDGVLHRGNSGTLRHLPILEQYLHRWPDVGVVVISDWRIGATLESLKGYFSDEFRPRVFARTAEYPAG-PNQRQEEVQDMVRRAGIHHYLVIDDDPDLYSPQFEPLLCPDPGEGLTSSDLERVGERITSWG 405
            ALFLDFDGVLHR  +G+   +P L   + R+P + +V+ ++WR+ A    L  YF D    R+   T   P+  P +R+ E      RAG+  Y+ +DDD   YS     L+  D         + RV  R+ + G
Sbjct:   47 ALFLDFDGVLHRAENGSFERMPQLVTLMQRFPQLHIVLSTNWRLHARRLQLLDYFPDAIHERLIGVTPYLPSSWPPRRERECHAFAHRAGLTRYVALDDDASGYSEGCSFLVLTDRXXXXXXXAVSRVEARLVALG 182          
BLAST of mRNA_M-pyrifera_M_contig84641.19732.1 vs. uniprot
Match: UPI0016561617 (HAD domain-containing protein n=1 Tax=Paraburkholderia sp. UCT31 TaxID=2615209 RepID=UPI0016561617)

HSP 1 Score: 79.0 bits (193), Expect = 5.470e-16
Identity = 45/133 (33.83%), Postives = 73/133 (54.89%), Query Frame = 1
Query:    4 LFLDFDGVLHRGNSGTLRHLPILEQYLHRWPDVGVVVISDWRIGATLESLKGYFSDEFRPRVFARTAEYPAGPNQ------RQEEVQDMVRRAGIHH-YLVIDDDPDLYSPQFEPLLCPDPGEGLTSSDLERV 381
            LFLDFDGVLHR  SGT   +P++ ++L   PD+ VV+ S WR   +L+ L+  F  +   R+ A T +      +      R  E++  +R AG    +  +DD+P L+    E ++  +  EG+T +D+ER+
Sbjct:    5 LFLDFDGVLHRYQSGTFTKVPLVVEFLRDHPDIDVVISSTWRYDNSLDELRQIFPVDIEHRIIAVTPDLSETTGRIARGFARITEIEAWLRGAGEDIVWRALDDEPGLFPHGAEKVVFTNSAEGVTPADIERL 137          
BLAST of mRNA_M-pyrifera_M_contig84641.19732.1 vs. uniprot
Match: UPI001E5CD000 (HAD domain-containing protein n=1 Tax=Nostoc sp. CHAB 5834 TaxID=2780403 RepID=UPI001E5CD000)

HSP 1 Score: 78.6 bits (192), Expect = 7.180e-16
Identity = 43/106 (40.57%), Postives = 59/106 (55.66%), Query Frame = 1
Query:    4 LFLDFDGVLHRGNSGTLRHLPILEQYLHRWPDVGVVVISDWRIGATLESLKGYFSDEFRPRVFARTAEYPAGPNQ--RQEEVQDMVRRAGIHHYLVIDDDPDLYSP 315
            LFLDFDGVL  GNSGTLRH P L + L  +P VG+V+ ++WR   +L  L  Y       RV+ +T   P G ++  RQ E++  +       +L IDD   L+ P
Sbjct:    5 LFLDFDGVLSPGNSGTLRHAPDLARLLDPYPRVGLVLTTNWRARESLSDLADYLRPALGRRVYDKTPILPGGEDRGGRQMEIEHWLAENPTKDWLAIDDTASLFRP 110          
BLAST of mRNA_M-pyrifera_M_contig84641.19732.1 vs. uniprot
Match: UPI0015517DC2 (HAD domain-containing protein n=1 Tax=Comamonas thiooxydans TaxID=363952 RepID=UPI0015517DC2)

HSP 1 Score: 76.3 bits (186), Expect = 5.930e-15
Identity = 44/131 (33.59%), Postives = 65/131 (49.62%), Query Frame = 1
Query:    4 LFLDFDGVLHRGNSGTLRHLPILEQYLHRWPDVGVVVISDWRIGATLES-LKGYFSDEFRPRVFARTAEYPAGPNQRQEEVQDMVRRAGIHHYLVIDDDPDLYSPQFEPLLCPDPGEGLTSSDLERVGERI 393
            LFLDFDGVLH G SGT  +L  LE  L   P V +V+ + WR+ +  E+ L+  FS E R R+   T + P    + + E        G H +  +DDD  L+      L+  DP  G+  + L  +  ++
Sbjct:   14 LFLDFDGVLHPGLSGTFCYLDRLETVLRELPHVRIVLSTSWRLESDFETELRPLFSPELRARIVGCTPDLPGQLRETEIEAWRARHAIGHHRWAALDDDASLFRVGSPGLILCDPARGVRPAQLIELRSKL 144          
BLAST of mRNA_M-pyrifera_M_contig84641.19732.1 vs. uniprot
Match: A0A6C2CWC4_9RHOO (Uncharacterized protein n=1 Tax=Zoogloea oleivorans TaxID=1552750 RepID=A0A6C2CWC4_9RHOO)

HSP 1 Score: 67.0 bits (162), Expect = 3.660e-11
Identity = 46/134 (34.33%), Postives = 67/134 (50.00%), Query Frame = 1
Query:    4 LFLDFDGVLHR-GNSGTLRHLPILEQYLHRWPDVGVVVISDWRIGATLESLKGYFSDEFRPRV-------FARTAEYPAGPNQRQEEVQDMVRRAGIHHYLVIDDDPDLYSPQFEPLLCPDPGEGLTSSDLERV 381
            +FLDFDGV H  G     R +P+LE  L  +P+V +V+ SDWR   +L  L   FS++ RPRV       F +TA    G  +++   Q +  +A    +L +DD P  + P    L+  D   G T  D  R+
Sbjct:   19 VFLDFDGVTHPWGEVEDFRCMPVLETVLRDYPEVRIVISSDWRTIFSLTKLAARFSEDIRPRVVDISMTIFPKTANELYGLREKEAR-QWLAAKAPSAEWLAVDDAPGNW-PTRARLVLTDFKRGFTEEDAGRM 150          
BLAST of mRNA_M-pyrifera_M_contig84641.19732.1 vs. uniprot
Match: Q63WY2_BURPS (Uncharacterized protein n=2 Tax=Burkholderia pseudomallei TaxID=28450 RepID=Q63WY2_BURPS)

HSP 1 Score: 58.9 bits (141), Expect = 3.890e-8
Identity = 49/143 (34.27%), Postives = 63/143 (44.06%), Query Frame = 1
Query:    4 LFLDFDGVLHRGNSGT---------------LRHLPILEQYLHRWPDVGVVVISDW--RIGA--TLESLKGYFSDEFRPRVFARTAEYPAGPNQ------RQEEVQDMVRRAGIHHYLVIDDDPDLYSPQFEPLLCPDPGEGL 357
            LFLD DGVLHRGNS                   +LP+L+  L  +PDV VV+ SDW  R G   T   L    S   R RV   T +      Q      R ++V D VRR  +  ++ IDD  D +   +E L+      GL
Sbjct:    7 LFLDIDGVLHRGNSYVAGSRIVSSAPGHIELFEYLPVLDDALSSYPDVSVVLSSDWAFRFGVDYTCSQLP---SPSLRARVIGATYQGCEFDEQLWPMLSRGQQVLDYVRRHALLTWMAIDDRKDGFDAHWERLVHTQTDSGL 146          
BLAST of mRNA_M-pyrifera_M_contig84641.19732.1 vs. uniprot
Match: UPI001A8F3F55 (HAD domain-containing protein n=1 Tax=Trinickia sp. DHG64 TaxID=2816356 RepID=UPI001A8F3F55)

HSP 1 Score: 57.4 bits (137), Expect = 1.490e-7
Identity = 41/132 (31.06%), Postives = 63/132 (47.73%), Query Frame = 1
Query:    4 LFLDFDGVLHRGNS------------GTLR---HLPILEQYLHRWPDVGVVVISDWRIGATLESLKGYFSDEF-RPRVFARTAEYPAGPNQ------RQEEVQDMVRRAGIHHYLVIDDDPDLYSPQFEPLL 333
            LFLD DGVLHRGN+            G++    ++P+LE  L  +PD G+V  +DW     ++  +     +F R RV   T +      +      R E+V D VRR  +  +L IDD  D +   ++ L+
Sbjct:    7 LFLDIDGVLHRGNAYVTGDRIVSSAPGSIELFEYVPVLEDLLRPYPDTGIVFSTDWAYRFGVDYTREMLPSQFLRERVTGATYQGCLFDERFWPMLSRGEQVLDYVRRHSLRQWLAIDDRRDGFEGHWQRLV 138          
BLAST of mRNA_M-pyrifera_M_contig84641.19732.1 vs. uniprot
Match: UPI001CF20ECE (HAD domain-containing protein n=5 Tax=Burkholderia TaxID=32008 RepID=UPI001CF20ECE)

HSP 1 Score: 57.4 bits (137), Expect = 1.560e-7
Identity = 43/121 (35.54%), Postives = 55/121 (45.45%), Query Frame = 1
Query:    4 LFLDFDGVLHRGNS---------------GTLRHLPILEQYLHRWPDVGVVVISDWRIGATLESLKGYF-SDEFRPRVFARTAEYPAGPNQ------RQEEVQDMVRRAG--IHHYLVIDD 294
            LFLDFDGVLHRGNS               G   +LP+L+  L  +PDV VV+ SDW     ++       S   R RV   T +      Q      R  +V D VRR G  +  ++ IDD
Sbjct:    8 LFLDFDGVLHRGNSYVAGRSIVSSAPGHIGLFEYLPVLDDALSSYPDVSVVLSSDWAFRFGVDYACSQLPSPSLRARVIGATYQGCEFDEQLWPMLSRGAQVLDYVRRQGRDVLEWIAIDD 128          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84641.19732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0012EC0CF82.910e-2741.79HAD domain-containing protein n=2 Tax=unclassified... [more]
A0A2T1AAI1_9RHOB2.710e-1839.69Type IV conjugative transfer system coupling prote... [more]
A0A154QYC1_9GAMM1.650e-1733.82Uncharacterized protein n=1 Tax=Rhodanobacter sp. ... [more]
UPI00165616175.470e-1633.83HAD domain-containing protein n=1 Tax=Paraburkhold... [more]
UPI001E5CD0007.180e-1640.57HAD domain-containing protein n=1 Tax=Nostoc sp. C... [more]
UPI0015517DC25.930e-1533.59HAD domain-containing protein n=1 Tax=Comamonas th... [more]
A0A6C2CWC4_9RHOO3.660e-1134.33Uncharacterized protein n=1 Tax=Zoogloea oleivoran... [more]
Q63WY2_BURPS3.890e-834.27Uncharacterized protein n=2 Tax=Burkholderia pseud... [more]
UPI001A8F3F551.490e-731.06HAD domain-containing protein n=1 Tax=Trinickia sp... [more]
UPI001CF20ECE1.560e-735.54HAD domain-containing protein n=5 Tax=Burkholderia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84641contigM-pyrifera_M_contig84641:80..496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score87.0
Seed ortholog evalue7.3e-15
Seed eggNOG ortholog596154.Alide2_4794
Hectar predicted targeting categoryother localisation
EggNOG OGs1NBCJ@1224,2EE9F@1,2VW04@28216,3383V@2,4AFH5@80864
Best tax levelComamonadaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size417
Cds size417
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816753.7607641-CDS-M-pyrifera_M_contig84641:79..4961622816753.7607641-CDS-M-pyrifera_M_contig84641:79..496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84641 80..496 -
1692278158.2375393-CDS-M-pyrifera_M_contig84641:79..4961692278158.2375393-CDS-M-pyrifera_M_contig84641:79..496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84641 80..496 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84641.19732.1prot_M-pyrifera_M_contig84641.19732.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84641 80..496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84641.19732.1

>prot_M-pyrifera_M_contig84641.19732.1 ID=prot_M-pyrifera_M_contig84641.19732.1|Name=mRNA_M-pyrifera_M_contig84641.19732.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
ALFLDFDGVLHRGNSGTLRHLPILEQYLHRWPDVGVVVISDWRIGATLES
LKGYFSDEFRPRVFARTAEYPAGPNQRQEEVQDMVRRAGIHHYLVIDDDP
DLYSPQFEPLLCPDPGEGLTSSDLERVGERITSWGRTI*
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mRNA from alignment at M-pyrifera_M_contig84641:80..496-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84641.19732.1 ID=mRNA_M-pyrifera_M_contig84641.19732.1|Name=mRNA_M-pyrifera_M_contig84641.19732.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig84641:80..496- (Macrocystis pyrifera P11B4 male)
GCGCTATTCCTAGATTTCGATGGTGTTCTGCATCGAGGTAATTCGGGCAC TCTGAGACATCTACCAATCCTTGAGCAGTATCTTCATCGGTGGCCGGATG TTGGCGTGGTTGTGATTTCGGACTGGCGCATTGGGGCGACTCTGGAGAGC TTGAAAGGCTACTTCTCAGATGAATTCCGGCCGAGAGTTTTTGCTCGCAC AGCAGAGTACCCCGCCGGCCCGAATCAGCGGCAGGAGGAGGTGCAGGACA TGGTGAGGCGTGCCGGCATTCATCACTACCTCGTGATTGACGACGACCCA GACCTCTATTCGCCCCAGTTTGAACCGCTGTTGTGTCCCGATCCGGGCGA AGGCCTTACATCTTCCGATCTTGAGCGGGTGGGTGAGCGAATTACGAGTT GGGGTAGGACGATATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84641:80..496-

>mRNA_M-pyrifera_M_contig84641.19732.1 ID=mRNA_M-pyrifera_M_contig84641.19732.1|Name=mRNA_M-pyrifera_M_contig84641.19732.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig84641:80..496- (Macrocystis pyrifera P11B4 male)
GCGCTATTCCTAGATTTCGATGGTGTTCTGCATCGAGGTAATTCGGGCAC
TCTGAGACATCTACCAATCCTTGAGCAGTATCTTCATCGGTGGCCGGATG
TTGGCGTGGTTGTGATTTCGGACTGGCGCATTGGGGCGACTCTGGAGAGC
TTGAAAGGCTACTTCTCAGATGAATTCCGGCCGAGAGTTTTTGCTCGCAC
AGCAGAGTACCCCGCCGGCCCGAATCAGCGGCAGGAGGAGGTGCAGGACA
TGGTGAGGCGTGCCGGCATTCATCACTACCTCGTGATTGACGACGACCCA
GACCTCTATTCGCCCCAGTTTGAACCGCTGTTGTGTCCCGATCCGGGCGA
AGGCCTTACATCTTCCGATCTTGAGCGGGTGGGTGAGCGAATTACGAGTT
GGGGTAGGACGATATAGGCGCTATTCCTAGATTTCGATGGTGTTCTGCAT
CGAGGTAATTCGGGCACTCTGAGACATCTACCAATCCTTGAGCAGTATCT
TCATCGGTGGCCGGATGTTGGCGTGGTTGTGATTTCGGACTGGCGCATTG
GGGCGACTCTGGAGAGCTTGAAAGGCTACTTCTCAGATGAATTCCGGCCG
AGAGTTTTTGCTCGCACAGCAGAGTACCCCGCCGGCCCGAATCAGCGGCA
GGAGGAGGTGCAGGACATGGTGAGGCGTGCCGGCATTCATCACTACCTCG
TGATTGACGACGACCCAGACCTCTATTCGCCCCAGTTTGAACCGCTGTTG
TGTCCCGATCCGGGCGAAGGCCTTACATCTTCCGATCTTGAGCGGGTGGG
TGAGCGAATTACGAGTTGGGGTAGGACGATATAG
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