mRNA_M-pyrifera_M_contig84641.19732.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig84641.19732.1 vs. uniprot
Match: UPI0012EC0CF8 (HAD domain-containing protein n=2 Tax=unclassified Methylocaldum TaxID=2622260 RepID=UPI0012EC0CF8) HSP 1 Score: 108 bits (269), Expect = 2.910e-27 Identity = 56/134 (41.79%), Postives = 73/134 (54.48%), Query Frame = 1 Query: 1 ALFLDFDGVLHRGNSGTLRHLPILEQYLHRWPDVGVVVISDWRIGATLESLKGYFSDEFRPRVFARTAEYPAGPNQRQEEVQDMVRRAGIHHYLVIDDDPDLYSPQFEPLLCPDPGEGLTSSDLERVGERITSW 402 ALFLDFDGVLH S T R+LP E L +PD+ +V+ S+WR G + L YFS FR R+ TA P GP RQ E++ R GI +L IDDD L+ P L+ E L R+ +R+ +W Sbjct: 19 ALFLDFDGVLHPSQSATFRYLPAFEATLRGYPDIDIVISSNWREGEPFDELLDYFSAGFRDRLIGATAVLP-GPYSRQREIEAYCRSFGIERWLAIDDDGTLFVPGCPQLILLSRNEALDEVGRRRLADRLAAW 151
BLAST of mRNA_M-pyrifera_M_contig84641.19732.1 vs. uniprot
Match: A0A2T1AAI1_9RHOB (Type IV conjugative transfer system coupling protein TraD n=3 Tax=Tritonibacter TaxID=2083206 RepID=A0A2T1AAI1_9RHOB) HSP 1 Score: 90.1 bits (222), Expect = 2.710e-18 Identity = 52/131 (39.69%), Postives = 71/131 (54.20%), Query Frame = 1 Query: 1 ALFLDFDGVLHRGNSGTLRHLPILEQYLHRWPDVGVVVISDWRIGATLESLKGYFSDEFRPRVFARTAEYPAGPNQRQEEVQDMVRRAGIHHYLVIDDDPDLYSPQFEPLLCPDPGEGLTSSDLERVGERI 393 A+FLDFDGVLH+G SGT LP+LEQ+L + DV VV+ S WR A + L+ FS + R R+ T P R E+ G+ Y+ +DDD L+ + LL D +GL D+ R+ E I Sbjct: 731 AIFLDFDGVLHKGTSGTFNKLPLLEQFLRQNDDVDVVISSSWRT-ADQDYLERLFSSDLRHRLIGTTIPENTVPT-RNMEIDLWAGTYGVKSYVALDDDATLFDSAWPHLLQTDGSKGLQPDDIHRLEEWI 859
BLAST of mRNA_M-pyrifera_M_contig84641.19732.1 vs. uniprot
Match: A0A154QYC1_9GAMM (Uncharacterized protein n=1 Tax=Rhodanobacter sp. FW510-R10 TaxID=1524462 RepID=A0A154QYC1_9GAMM) HSP 1 Score: 84.0 bits (206), Expect = 1.650e-17 Identity = 46/136 (33.82%), Postives = 68/136 (50.00%), Query Frame = 1 Query: 1 ALFLDFDGVLHRGNSGTLRHLPILEQYLHRWPDVGVVVISDWRIGATLESLKGYFSDEFRPRVFARTAEYPAG-PNQRQEEVQDMVRRAGIHHYLVIDDDPDLYSPQFEPLLCPDPGEGLTSSDLERVGERITSWG 405 ALFLDFDGVLHR +G+ +P L + R+P + +V+ ++WR+ A L YF D R+ T P+ P +R+ E RAG+ Y+ +DDD YS L+ D + RV R+ + G Sbjct: 47 ALFLDFDGVLHRAENGSFERMPQLVTLMQRFPQLHIVLSTNWRLHARRLQLLDYFPDAIHERLIGVTPYLPSSWPPRRERECHAFAHRAGLTRYVALDDDASGYSEGCSFLVLTDRXXXXXXXAVSRVEARLVALG 182
BLAST of mRNA_M-pyrifera_M_contig84641.19732.1 vs. uniprot
Match: UPI0016561617 (HAD domain-containing protein n=1 Tax=Paraburkholderia sp. UCT31 TaxID=2615209 RepID=UPI0016561617) HSP 1 Score: 79.0 bits (193), Expect = 5.470e-16 Identity = 45/133 (33.83%), Postives = 73/133 (54.89%), Query Frame = 1 Query: 4 LFLDFDGVLHRGNSGTLRHLPILEQYLHRWPDVGVVVISDWRIGATLESLKGYFSDEFRPRVFARTAEYPAGPNQ------RQEEVQDMVRRAGIHH-YLVIDDDPDLYSPQFEPLLCPDPGEGLTSSDLERV 381 LFLDFDGVLHR SGT +P++ ++L PD+ VV+ S WR +L+ L+ F + R+ A T + + R E++ +R AG + +DD+P L+ E ++ + EG+T +D+ER+ Sbjct: 5 LFLDFDGVLHRYQSGTFTKVPLVVEFLRDHPDIDVVISSTWRYDNSLDELRQIFPVDIEHRIIAVTPDLSETTGRIARGFARITEIEAWLRGAGEDIVWRALDDEPGLFPHGAEKVVFTNSAEGVTPADIERL 137
BLAST of mRNA_M-pyrifera_M_contig84641.19732.1 vs. uniprot
Match: UPI001E5CD000 (HAD domain-containing protein n=1 Tax=Nostoc sp. CHAB 5834 TaxID=2780403 RepID=UPI001E5CD000) HSP 1 Score: 78.6 bits (192), Expect = 7.180e-16 Identity = 43/106 (40.57%), Postives = 59/106 (55.66%), Query Frame = 1 Query: 4 LFLDFDGVLHRGNSGTLRHLPILEQYLHRWPDVGVVVISDWRIGATLESLKGYFSDEFRPRVFARTAEYPAGPNQ--RQEEVQDMVRRAGIHHYLVIDDDPDLYSP 315 LFLDFDGVL GNSGTLRH P L + L +P VG+V+ ++WR +L L Y RV+ +T P G ++ RQ E++ + +L IDD L+ P Sbjct: 5 LFLDFDGVLSPGNSGTLRHAPDLARLLDPYPRVGLVLTTNWRARESLSDLADYLRPALGRRVYDKTPILPGGEDRGGRQMEIEHWLAENPTKDWLAIDDTASLFRP 110
BLAST of mRNA_M-pyrifera_M_contig84641.19732.1 vs. uniprot
Match: UPI0015517DC2 (HAD domain-containing protein n=1 Tax=Comamonas thiooxydans TaxID=363952 RepID=UPI0015517DC2) HSP 1 Score: 76.3 bits (186), Expect = 5.930e-15 Identity = 44/131 (33.59%), Postives = 65/131 (49.62%), Query Frame = 1 Query: 4 LFLDFDGVLHRGNSGTLRHLPILEQYLHRWPDVGVVVISDWRIGATLES-LKGYFSDEFRPRVFARTAEYPAGPNQRQEEVQDMVRRAGIHHYLVIDDDPDLYSPQFEPLLCPDPGEGLTSSDLERVGERI 393 LFLDFDGVLH G SGT +L LE L P V +V+ + WR+ + E+ L+ FS E R R+ T + P + + E G H + +DDD L+ L+ DP G+ + L + ++ Sbjct: 14 LFLDFDGVLHPGLSGTFCYLDRLETVLRELPHVRIVLSTSWRLESDFETELRPLFSPELRARIVGCTPDLPGQLRETEIEAWRARHAIGHHRWAALDDDASLFRVGSPGLILCDPARGVRPAQLIELRSKL 144
BLAST of mRNA_M-pyrifera_M_contig84641.19732.1 vs. uniprot
Match: A0A6C2CWC4_9RHOO (Uncharacterized protein n=1 Tax=Zoogloea oleivorans TaxID=1552750 RepID=A0A6C2CWC4_9RHOO) HSP 1 Score: 67.0 bits (162), Expect = 3.660e-11 Identity = 46/134 (34.33%), Postives = 67/134 (50.00%), Query Frame = 1 Query: 4 LFLDFDGVLHR-GNSGTLRHLPILEQYLHRWPDVGVVVISDWRIGATLESLKGYFSDEFRPRV-------FARTAEYPAGPNQRQEEVQDMVRRAGIHHYLVIDDDPDLYSPQFEPLLCPDPGEGLTSSDLERV 381 +FLDFDGV H G R +P+LE L +P+V +V+ SDWR +L L FS++ RPRV F +TA G +++ Q + +A +L +DD P + P L+ D G T D R+ Sbjct: 19 VFLDFDGVTHPWGEVEDFRCMPVLETVLRDYPEVRIVISSDWRTIFSLTKLAARFSEDIRPRVVDISMTIFPKTANELYGLREKEAR-QWLAAKAPSAEWLAVDDAPGNW-PTRARLVLTDFKRGFTEEDAGRM 150
BLAST of mRNA_M-pyrifera_M_contig84641.19732.1 vs. uniprot
Match: Q63WY2_BURPS (Uncharacterized protein n=2 Tax=Burkholderia pseudomallei TaxID=28450 RepID=Q63WY2_BURPS) HSP 1 Score: 58.9 bits (141), Expect = 3.890e-8 Identity = 49/143 (34.27%), Postives = 63/143 (44.06%), Query Frame = 1 Query: 4 LFLDFDGVLHRGNSGT---------------LRHLPILEQYLHRWPDVGVVVISDW--RIGA--TLESLKGYFSDEFRPRVFARTAEYPAGPNQ------RQEEVQDMVRRAGIHHYLVIDDDPDLYSPQFEPLLCPDPGEGL 357 LFLD DGVLHRGNS +LP+L+ L +PDV VV+ SDW R G T L S R RV T + Q R ++V D VRR + ++ IDD D + +E L+ GL Sbjct: 7 LFLDIDGVLHRGNSYVAGSRIVSSAPGHIELFEYLPVLDDALSSYPDVSVVLSSDWAFRFGVDYTCSQLP---SPSLRARVIGATYQGCEFDEQLWPMLSRGQQVLDYVRRHALLTWMAIDDRKDGFDAHWERLVHTQTDSGL 146
BLAST of mRNA_M-pyrifera_M_contig84641.19732.1 vs. uniprot
Match: UPI001A8F3F55 (HAD domain-containing protein n=1 Tax=Trinickia sp. DHG64 TaxID=2816356 RepID=UPI001A8F3F55) HSP 1 Score: 57.4 bits (137), Expect = 1.490e-7 Identity = 41/132 (31.06%), Postives = 63/132 (47.73%), Query Frame = 1 Query: 4 LFLDFDGVLHRGNS------------GTLR---HLPILEQYLHRWPDVGVVVISDWRIGATLESLKGYFSDEF-RPRVFARTAEYPAGPNQ------RQEEVQDMVRRAGIHHYLVIDDDPDLYSPQFEPLL 333 LFLD DGVLHRGN+ G++ ++P+LE L +PD G+V +DW ++ + +F R RV T + + R E+V D VRR + +L IDD D + ++ L+ Sbjct: 7 LFLDIDGVLHRGNAYVTGDRIVSSAPGSIELFEYVPVLEDLLRPYPDTGIVFSTDWAYRFGVDYTREMLPSQFLRERVTGATYQGCLFDERFWPMLSRGEQVLDYVRRHSLRQWLAIDDRRDGFEGHWQRLV 138
BLAST of mRNA_M-pyrifera_M_contig84641.19732.1 vs. uniprot
Match: UPI001CF20ECE (HAD domain-containing protein n=5 Tax=Burkholderia TaxID=32008 RepID=UPI001CF20ECE) HSP 1 Score: 57.4 bits (137), Expect = 1.560e-7 Identity = 43/121 (35.54%), Postives = 55/121 (45.45%), Query Frame = 1 Query: 4 LFLDFDGVLHRGNS---------------GTLRHLPILEQYLHRWPDVGVVVISDWRIGATLESLKGYF-SDEFRPRVFARTAEYPAGPNQ------RQEEVQDMVRRAG--IHHYLVIDD 294 LFLDFDGVLHRGNS G +LP+L+ L +PDV VV+ SDW ++ S R RV T + Q R +V D VRR G + ++ IDD Sbjct: 8 LFLDFDGVLHRGNSYVAGRSIVSSAPGHIGLFEYLPVLDDALSSYPDVSVVLSSDWAFRFGVDYACSQLPSPSLRARVIGATYQGCEFDEQLWPMLSRGAQVLDYVRRQGRDVLEWIAIDD 128 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84641.19732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig84641.19732.1 >prot_M-pyrifera_M_contig84641.19732.1 ID=prot_M-pyrifera_M_contig84641.19732.1|Name=mRNA_M-pyrifera_M_contig84641.19732.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp ALFLDFDGVLHRGNSGTLRHLPILEQYLHRWPDVGVVVISDWRIGATLESback to top mRNA from alignment at M-pyrifera_M_contig84641:80..496- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig84641.19732.1 ID=mRNA_M-pyrifera_M_contig84641.19732.1|Name=mRNA_M-pyrifera_M_contig84641.19732.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig84641:80..496- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig84641:80..496- >mRNA_M-pyrifera_M_contig84641.19732.1 ID=mRNA_M-pyrifera_M_contig84641.19732.1|Name=mRNA_M-pyrifera_M_contig84641.19732.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig84641:80..496- (Macrocystis pyrifera P11B4 male)back to top |