mRNA_M-pyrifera_M_contig84634.19728.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84634.19728.1
Unique NamemRNA_M-pyrifera_M_contig84634.19728.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84634.19728.1 vs. uniprot
Match: A0A2D6SYW6_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SYW6_9PLAN)

HSP 1 Score: 154 bits (389), Expect = 2.390e-40
Identity = 109/295 (36.95%), Postives = 160/295 (54.24%), Query Frame = 1
Query:    1 FWAIGLGMIYWWLRTKYTRTHLLLQSDRLAIQRHFFNKKWMTDTFLDTTSHAELTVAYEQNDIPVYSVAVNGTNRTAKFATRLSRQEKDWLKDTINGFLGV-GLGDP-ELKSEPTDCPACGAITAVEQLQKSDEGLLCAQCGELVFDKSRGEVNASRRSAT-MIADVDPDKVT-DERVQIEDSGRQRLTFSYVLAPEGTPRTVISMTLMILSLVASLVPAGFLLAAILQQ-----QLISAIVAGTVLLPGLIMIPLFRQMLLNGRISIDLDREWCHVRWHWRRFGYSKKLATAAI 858
            FW +GL M+   +R ++TR H+LL  DRLAIQR  F +K + +T L + S A L  +Y++ND+PVY V V G+NRTAKF T LSR+EK W   TINGFLG+ G GD     S PT+CP  GA      +   D    C+ CG      +R +++   +       +VDP  +  ++ V ++++    L F   L P G  R+++ +   +  L+     AG  L +  +      +L+S I A  V+L GLI + L    LL GRI++DL+ E    RWH    G  +KL T++I
Sbjct:   71 FWLVGLVMLTIGVRMRFTRLHILLDRDRLAIQRTLFGRKSLAETQLTSESRARLVESYQENDVPVYRVDVEGSNRTAKFGTSLSREEKRWFVATINGFLGIEGGGDGGHSVSVPTECPDYGADFESGAVT-FDGSWSCSVCGSAGKIDTRDDLDPDGQPLVDPTEEVDPALLPGNDPVVVDETSFDHLRFHLDLLPRGGVRSIVGIFGSVFCLI-WFGGAGTSLFSTFEGDDEFGKLVSLIFAAFVMLGGLIPL-LITAALLRGRITVDLNEERLLCRWHLGPLGLKRKLPTSSI 362          
BLAST of mRNA_M-pyrifera_M_contig84634.19728.1 vs. uniprot
Match: A0A836RMF0_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A836RMF0_9PLAN)

HSP 1 Score: 128 bits (322), Expect = 2.200e-30
Identity = 92/288 (31.94%), Postives = 142/288 (49.31%), Query Frame = 1
Query:    1 FWAIGLGMIYWWLRTKYTRTHLLLQSDRLAIQRHFFNKKWMTDTFLDTTSHAELTVAYEQNDIPVYSVAVNGTNRTAKFATRLSRQEKDWLKDTINGFLGVGLGDPELKSEPTDCPACGAITAVEQLQKSDEGLLCAQCGELVFDKSRGEVNASRRSATMIADVDPDKVTDER-VQIEDSGRQRLTFSYVLAPEGTPRTVISMTLMILSLVASLVPAGFLLAAILQQQLISAIVAGTVLLPGLIMIPLFRQMLL-NGRISIDLDREWCHVRWHWRRFGYSKKLATAAI 858
            FW IGL M+ +W+R +++R  +L++ +R  +QR  FN+K +  T L   + AEL  +Y +N++PVY++AV GT+RT KF   L+ QEK+WL   IN  LG    D E K+  T CP CGA   +     +           +V ++S         +A    +V PD V  E  V++E +   RL  S  L P+   R  +++   +  LV  +        A  +    +A   G +LL G I  P    +L+    ++ID+ REW   RWH    GY+ + A   I
Sbjct:  136 FWLIGLFMLGFWVRMRFSRFFVLVEPNRFTLQRVLFNRKSLQMTELGPDARAELVESYRENNVPVYAIAVTGTDRTIKFGVALTPQEKEWLSAQINRMLGK---DTEEKATAT-CPICGATWILPARPAASVETXXXXXASIVPERSV--------TAETPPEVSPDDVPRESCVKMERADGDRLRLSLPLIPKPVVRGAVTVAACVFELVWCVFIVLIFWDAFARGIGFAAAFGGLMLLLGAI--PAVTSLLIVRSHLTIDVTREWLACRWHAGPLGYTFRAAPETI 409          
BLAST of mRNA_M-pyrifera_M_contig84634.19728.1 vs. uniprot
Match: A0A517T9P3_9PLAN (Uncharacterized protein n=1 Tax=Calycomorphotria hydatis TaxID=2528027 RepID=A0A517T9P3_9PLAN)

HSP 1 Score: 97.4 bits (241), Expect = 2.130e-19
Identity = 84/284 (29.58%), Postives = 127/284 (44.72%), Query Frame = 1
Query:    1 FWAIGLGMIYWWLRTKYTRTHLLLQSDRLAIQRHFFNKKWMTDTFLDTTSHAELTVAYEQNDIPVYSVAVNGTNRTAKFATRLSRQEKDWLKDTINGFLGVGLGDPELKSEPTDCPACGAITAVEQLQKSDEGLLCAQCGELVFDKSRGEVNASRRSATMIADVDPDKVTDERVQIEDSGRQRLTFSYVLAPEGTPRTVISMTLMILSLVASLVPAGFLLAAI--------LQQQLISAIVAGTVLLPGLIMIPLFRQMLLNGRISIDLDREWCHVRWHWRRFG 828
            FW IG+ M  +WLR + +   +L++S R+A+QR     K + +  LD  S A L   Y +ND P+YS+ V G+     F T L +++KDWL + IN FLGV     E +  P            E++QK  E L      + V  K+  E   ++  A    D       D  V I      RL F   L PEG PR ++    + L   A  V  G  + +         +   L+ AI+  T ++P L+ I        + RI++ +  +   VRWHW  +G
Sbjct:   82 FWGIGIAMAIYWLRMRLSSFLVLVESHRIAVQRSVLGWKSIDEEPLDEHSSAFLKEEYRENDTPIYSIRVVGSQGDTTFGTSLIKEDKDWLMNRINDFLGVSA---EKRLPP------------ERMQKDREPL------KNVLKKTAEESELAQAIAPNQLDA------DSVVNIAIDETSRLRFWVPLVPEGNPRLLLRRIALALGF-AWCVMMGLTVYSFSNSGGGFPILDLLLMAIMGTTGVIPLLVYIAAG-----SARITVTIWDKGVDVRWHWWMWG 332          
BLAST of mRNA_M-pyrifera_M_contig84634.19728.1 vs. uniprot
Match: A0A3L7QG34_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7QG34_9BACT)

HSP 1 Score: 81.3 bits (199), Expect = 1.230e-13
Identity = 86/323 (26.63%), Postives = 125/323 (38.70%), Query Frame = 1
Query:    1 FWAIGLGMIYWWLRTKYTRTHLLLQSDRLAIQRHFFNKKWMTDTFLDTTSHAELTVAYEQNDIPVYSVAVNGTNRTAKFATRLSRQEKDWLKDTINGFLGVGLGDPELKSEPTDCPACGAITAVEQLQKSDE--GLLCAQCGELVFDKSRGEVNAS-----RRSATMIAD--------------VDPDKVTDERVQIEDSGRQRLTFSYVLAPEGTPRTVISMTLMILSLVASLV----------PAG------FLLAAILQQQLISAIVAGTVLLPGLIMIPLFRQMLLNGRISIDLDREWCHVRWHWRRFGYSKKLATAAI 858
            FW  G G+I  W+R ++TR  LLL+ DRL IQR  F      +  L     A L  AY  N++ VY + V G   + KF   LS   +  L   IN FLGV         +   C  CG      QL    E  G + A+    +   + GE + S     R  A   A               +D  +   E + +ED   +R  F Y L   G  RT  ++    + LVA+ +          PAG      FL+A +L   +   + AG            F   +  GRI ++L  +   +RW W      K +   ++
Sbjct:  140 FWLTGFGLIVVWVRMRFTRLFLLLEKDRLVIQRKIFRTS-NRELILGAAPRASLEEAYSSNEVKVYQLVVRGEGASEKFGVALSPPVQQLLMREINDFLGVETLSITPLQKMDVCSFCGV-----QLPGDPEPDGFIAAENNHTLDFITEGETDPSHIPKPRLCAACQAQSEASGQTSLWEPLSLDHGEQLPEGLVVEDHSPERWAFRYPLIMAGAFRTYATIFAGFMVLVAAGMGGMMFSNIAPPAGQPLGFLFLIAPLLFISM-PLLTAGC-----------FLMAVRGGRIIVELTPKEVRLRWGWGLVSIKKNIPIESV 444          
BLAST of mRNA_M-pyrifera_M_contig84634.19728.1 vs. uniprot
Match: A0A4Q2YMQ6_9BACT (DUF2244 domain-containing protein n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q2YMQ6_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 7.660e-7
Identity = 32/116 (27.59%), Postives = 55/116 (47.41%), Query Frame = 1
Query:    1 FWAIGLGMIYWWLRTKYTRTHLLLQSDRLAIQRHFFNKKWMTDTFLDTTSHAELTVAYEQNDIPVYSVAVNGTNRTAKFATRLSRQEKDWLKDTINGFLGVGLGDPELKSEPTDCP 348
            FWA+G+GM Y  LR+KY R  +   + R+ ++R  F +       +   +     V Y++N  PV+ + + G     +F + L+  EK WL D +   + + L    L   P+  P
Sbjct:  150 FWAVGIGMSYAALRSKYARHRISAGAGRVVLRRELFGRSTEKSLDMAGINSVSREVFYQKNYRPVHGIEIKGAGGKLRFGSMLTEDEKAWLVDEMKRVM-MRLEQDLLSHAPSPLP 264          
BLAST of mRNA_M-pyrifera_M_contig84634.19728.1 vs. uniprot
Match: A0A6C2DTX6_9CYAN (Non-specific serine/threonine protein kinase n=2 Tax=unclassified Pseudanabaena TaxID=2593292 RepID=A0A6C2DTX6_9CYAN)

HSP 1 Score: 59.7 bits (143), Expect = 1.920e-6
Identity = 39/106 (36.79%), Postives = 50/106 (47.17%), Query Frame = 1
Query:    1 FWAIGLGMIYWWLRTKYTRTHLLLQS-------DRLAIQRHFFNKKWMTDTFLDTTSHAELTVAYEQNDIPVYSVAVNGTNRTAKFATRLSRQEKDWLKDTINGFL 297
            FW IGLGM Y  L   + +  L++         D L I+RH   K              EL  +YE N+ PV  + +N    T KF + LSR EK+WL   INGFL
Sbjct:  391 FWIIGLGMTYAGLSFLFGKVRLVIGDRNFRIDWDMLGIKRHVQGKT-------QDLRQIELKSSYEINNQPVMELRINQGIYTHKFGSGLSRPEKEWLLQEINGFL 489          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84634.19728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2D6SYW6_9PLAN2.390e-4036.95Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A836RMF0_9PLAN2.200e-3031.94Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A517T9P3_9PLAN2.130e-1929.58Uncharacterized protein n=1 Tax=Calycomorphotria h... [more]
A0A3L7QG34_9BACT1.230e-1326.63Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A4Q2YMQ6_9BACT7.660e-727.59DUF2244 domain-containing protein n=1 Tax=Verrucom... [more]
A0A6C2DTX6_9CYAN1.920e-636.79Non-specific serine/threonine protein kinase n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84634contigM-pyrifera_M_contig84634:17..874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size858
Cds size837
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816753.5316904-CDS-M-pyrifera_M_contig84634:16..8531622816753.5316904-CDS-M-pyrifera_M_contig84634:16..853Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84634 17..853 -
1692278158.0883172-CDS-M-pyrifera_M_contig84634:16..8531692278158.0883172-CDS-M-pyrifera_M_contig84634:16..853Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84634 17..853 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816753.542444-UTR-M-pyrifera_M_contig84634:853..8741622816753.542444-UTR-M-pyrifera_M_contig84634:853..874Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84634 854..874 -
1692278158.100934-UTR-M-pyrifera_M_contig84634:853..8741692278158.100934-UTR-M-pyrifera_M_contig84634:853..874Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84634 854..874 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84634.19728.1prot_M-pyrifera_M_contig84634.19728.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84634 17..853 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84634.19728.1

>prot_M-pyrifera_M_contig84634.19728.1 ID=prot_M-pyrifera_M_contig84634.19728.1|Name=mRNA_M-pyrifera_M_contig84634.19728.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=279bp
MIYWWLRTKYTRTHLLLQSDRLAIQRHFFNKKWMTDTFLDTTSHAELTVA
YEQNDIPVYSVAVNGTNRTAKFATRLSRQEKDWLKDTINGFLGVGLGDPE
LKSEPTDCPACGAITAVEQLQKSDEGLLCAQCGELVFDKSRGEVNASRRS
ATMIADVDPDKVTDERVQIEDSGRQRLTFSYVLAPEGTPRTVISMTLMIL
SLVASLVPAGFLLAAILQQQLISAIVAGTVLLPGLIMIPLFRQMLLNGRI
SIDLDREWCHVRWHWRRFGYSKKLATAAI
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mRNA from alignment at M-pyrifera_M_contig84634:17..874-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84634.19728.1 ID=mRNA_M-pyrifera_M_contig84634.19728.1|Name=mRNA_M-pyrifera_M_contig84634.19728.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig84634:17..874- (Macrocystis pyrifera P11B4 male)
TTCTGGGCGATCGGGTTAGGGATGATCTACTGGTGGCTGCGCACGAAGTA CACGCGCACTCATCTCCTCCTGCAGTCCGACCGCCTCGCAATTCAACGAC ACTTCTTCAACAAGAAGTGGATGACGGACACATTTCTCGACACCACTTCG CACGCTGAGTTGACCGTCGCGTACGAACAGAATGATATCCCGGTTTACTC GGTCGCAGTGAATGGCACAAATCGCACAGCCAAGTTTGCCACACGACTAA GTCGCCAGGAGAAAGACTGGTTGAAGGACACGATCAATGGGTTCCTCGGA GTGGGGCTGGGAGATCCTGAACTGAAGAGTGAGCCGACGGATTGTCCTGC TTGCGGAGCAATCACGGCTGTCGAGCAACTGCAGAAGTCTGACGAAGGGT TGCTCTGTGCACAGTGTGGAGAACTCGTCTTCGACAAGTCGCGTGGTGAG GTGAATGCATCGAGGCGGTCCGCAACGATGATCGCTGACGTCGATCCCGA CAAAGTCACTGACGAACGGGTGCAAATCGAAGACTCAGGTCGTCAGCGGC TGACTTTTTCTTATGTGCTGGCCCCGGAAGGAACACCGCGAACCGTCATC AGTATGACATTGATGATTCTCAGCTTGGTTGCGAGTCTCGTCCCTGCTGG ATTCCTGCTCGCAGCGATCCTCCAGCAACAACTCATCTCTGCGATCGTGG CAGGGACAGTTCTACTTCCCGGTCTCATCATGATTCCGTTATTTCGACAG ATGTTGCTGAACGGACGGATCAGCATCGATCTTGATCGCGAATGGTGTCA TGTCCGCTGGCATTGGCGACGCTTTGGTTACTCGAAGAAGCTCGCGACCG CAGCCATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84634:17..874-

>mRNA_M-pyrifera_M_contig84634.19728.1 ID=mRNA_M-pyrifera_M_contig84634.19728.1|Name=mRNA_M-pyrifera_M_contig84634.19728.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1674bp|location=Sequence derived from alignment at M-pyrifera_M_contig84634:17..874- (Macrocystis pyrifera P11B4 male)
ATGATCTACTGGTGGCTGCGCACGAAGTACACGCGCACTCATCTCCTCCT
GCAGTCCGACCGCCTCGCAATTCAACGACACTTCTTCAACAAGAAGTGGA
TGACGGACACATTTCTCGACACCACTTCGCACGCTGAGTTGACCGTCGCG
TACGAACAGAATGATATCCCGGTTTACTCGGTCGCAGTGAATGGCACAAA
TCGCACAGCCAAGTTTGCCACACGACTAAGTCGCCAGGAGAAAGACTGGT
TGAAGGACACGATCAATGGGTTCCTCGGAGTGGGGCTGGGAGATCCTGAA
CTGAAGAGTGAGCCGACGGATTGTCCTGCTTGCGGAGCAATCACGGCTGT
CGAGCAACTGCAGAAGTCTGACGAAGGGTTGCTCTGTGCACAGTGTGGAG
AACTCGTCTTCGACAAGTCGCGTGGTGAGGTGAATGCATCGAGGCGGTCC
GCAACGATGATCGCTGACGTCGATCCCGACAAAGTCACTGACGAACGGGT
GCAAATCGAAGACTCAGGTCGTCAGCGGCTGACTTTTTCTTATGTGCTGG
CCCCGGAAGGAACACCGCGAACCGTCATCAGTATGACATTGATGATTCTC
AGCTTGGTTGCGAGTCTCGTCCCTGCTGGATTCCTGCTCGCAGCGATCCT
CCAGCAACAACTCATCTCTGCGATCGTGGCAGGGACAGTTCTACTTCCCG
GTCTCATCATGATTCCGTTATTTCGACAGATGTTGCTGAACGGACGGATC
AGCATCGATCTTGATCGCGAATGGTGTCATGTCCGCTGGCATTGGCGACG
CTTTGGTTACTCGAAGAAGCTCGCGACCGCAGCCATCATGATCTACTGGT
GGCTGCGCACGAAGTACACGCGCACTCATCTCCTCCTGCAGTCCGACCGC
CTCGCAATTCAACGACACTTCTTCAACAAGAAGTGGATGACGGACACATT
TCTCGACACCACTTCGCACGCTGAGTTGACCGTCGCGTACGAACAGAATG
ATATCCCGGTTTACTCGGTCGCAGTGAATGGCACAAATCGCACAGCCAAG
TTTGCCACACGACTAAGTCGCCAGGAGAAAGACTGGTTGAAGGACACGAT
CAATGGGTTCCTCGGAGTGGGGCTGGGAGATCCTGAACTGAAGAGTGAGC
CGACGGATTGTCCTGCTTGCGGAGCAATCACGGCTGTCGAGCAACTGCAG
AAGTCTGACGAAGGGTTGCTCTGTGCACAGTGTGGAGAACTCGTCTTCGA
CAAGTCGCGTGGTGAGGTGAATGCATCGAGGCGGTCCGCAACGATGATCG
CTGACGTCGATCCCGACAAAGTCACTGACGAACGGGTGCAAATCGAAGAC
TCAGGTCGTCAGCGGCTGACTTTTTCTTATGTGCTGGCCCCGGAAGGAAC
ACCGCGAACCGTCATCAGTATGACATTGATGATTCTCAGCTTGGTTGCGA
GTCTCGTCCCTGCTGGATTCCTGCTCGCAGCGATCCTCCAGCAACAACTC
ATCTCTGCGATCGTGGCAGGGACAGTTCTACTTCCCGGTCTCATCATGAT
TCCGTTATTTCGACAGATGTTGCTGAACGGACGGATCAGCATCGATCTTG
ATCGCGAATGGTGTCATGTCCGCTGGCATTGGCGACGCTTTGGTTACTCG
AAGAAGCTCGCGACCGCAGCCATC
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