mRNA_M-pyrifera_M_contig84630.19725.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84630.19725.1
Unique NamemRNA_M-pyrifera_M_contig84630.19725.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84630.19725.1 vs. uniprot
Match: A0A7Y4SYG0_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7Y4SYG0_9BACT)

HSP 1 Score: 153 bits (386), Expect = 1.650e-43
Identity = 80/172 (46.51%), Postives = 112/172 (65.12%), Query Frame = 1
Query:   67 RAVDAPNLAAAKVASDYQVYDLARVGVLPVTCHDATLEEREQLQEIVYNEFSQVVDYELVLLTEDDLAEVIASDPYLRGGYQGETVLGISERFNLDGLLVTIVSNRKAFPPQKLNVQADLVATETGMAIWHAAVSLQADRPDVRLGVEAFYGHGSPMSADSWTGALLSPSRF 582
            R  + P LA A V+SD++ Y L R+G+LP T    T  +   LQ  +++E +Q   +ELVLL  DDLAE+ ASDPY RG Y+ +T++G+SER+NLDG+L  IV+  + FPPQ L++Q DLV+ ETG+ IW  +V+L A  P V  G++ +YG        +W  ALLSP RF
Sbjct:   23 RPAEMPKLANAVVSSDFESYALRRIGLLPFTGRGLTTTQGLDLQRALHSELAQSTPFELVLLDGDDLAELDASDPYRRGWYKPKTIIGLSERYNLDGILFGIVTQERFFPPQLLSLQVDLVSAETGLVIWSGSVNLDASDPRVVSGLKVYYGFEED-DDQAWRVALLSPERF 193          
BLAST of mRNA_M-pyrifera_M_contig84630.19725.1 vs. uniprot
Match: A0A2E5X5X9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E5X5X9_9BACT)

HSP 1 Score: 137 bits (344), Expect = 3.510e-37
Identity = 81/189 (42.86%), Postives = 108/189 (57.14%), Query Frame = 1
Query:   16 LPAALLLTTGCQTILRPRAVDAPNLAAAKVASDYQVYDLARVGVLPVTCHDATLEEREQLQEIVYNEFSQVVDYELVLLTEDDLAEVIASDPYLRGGYQGETVLGISERFNLDGLLVTIVSNRKAFPPQKLNVQADLVATETGMAIWHAAVSLQADRPDVRLGVEAFYGHGSPMSADSWTGALLSPSRF 582
            +P AL     CQ +  P  VD   LA A+VASD+  Y L RVG +P T       +R   Q   + EFS    +E+V LT  DLAE+  SDPY RG Y+  T++ ++ RF LDG+L+  V+    FPPQ+L VQ DL++ ETGM IW +AV L A    VR  + A+Y      + ++W  ALLSP RF
Sbjct:    9 IPTALAFLGACQGV--PAQVDL--LATAQVASDFDTYQLGRVGQVPFTGAGLDHNQRGAFQRAFFAEFSGNTPFEIVPLTAPDLAEIERSDPYRRGYYRTHTIIELARRFQLDGILIGTVTAWHPFPPQRLAVQVDLLSAETGMVIWSSAVHLDASDMVVRDNLRAWYDSHPGEAGENWEVALLSPRRF 193          
BLAST of mRNA_M-pyrifera_M_contig84630.19725.1 vs. uniprot
Match: A0A2D5W8S4_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5W8S4_9BACT)

HSP 1 Score: 132 bits (331), Expect = 3.150e-35
Identity = 76/183 (41.53%), Postives = 107/183 (58.47%), Query Frame = 1
Query:   34 LTTGCQTILRPRAVDAPNLAAAKVASDYQVYDLARVGVLPVTCHDATLEEREQLQEIVYNEFSQVVDYELVLLTEDDLAEVIASDPYLRGGYQGETVLGISERFNLDGLLVTIVSNRKAFPPQKLNVQADLVATETGMAIWHAAVSLQADRPDVRLGVEAFYGHGSPMSADSWTGALLSPSRF 582
            L + CQ++  P  VD   LA A+VASD+  Y L RVG +P    +    +    Q+  + EFS    +E+V L+  DLAE+  SDPY RG Y+  T++ +S RF LDG+L+  V+    FPPQ+L VQ DL++ ETGM IW +A+ L A    +R  + A+Y      + +SW  ALLSP RF
Sbjct:   15 LLSACQSV--PAQVDL--LATAQVASDFDTYSLERVGQVPFAGPNLDHNQANAFQQAFFAEFSGNTPFEIVPLSVADLAEIQRSDPYRRGYYRTHTIIELSRRFQLDGILIGTVTAWHPFPPQRLAVQVDLLSAETGMVIWSSAIHLDASDLTMRENLRAWYDAHPGEAGESWELALLSPRRF 193          
BLAST of mRNA_M-pyrifera_M_contig84630.19725.1 vs. uniprot
Match: A0A523PUX3_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PUX3_9BACT)

HSP 1 Score: 122 bits (307), Expect = 1.190e-31
Identity = 70/192 (36.46%), Postives = 106/192 (55.21%), Query Frame = 1
Query:   13 LLPAALLLTTGCQTILRPRAVDAPNLAAAKVASDYQVYDLARVGVLPVTCHDATLEEREQLQEIVYNEFSQVVDYELVLLTEDDLAEVIASDPYLRGGYQGETVLGISERFNLDGLLVTIVSNRKAFPPQKLNVQADLVATETGMAIWHAAVSLQADRPDVR--LGVEAFYGHGSPMSADSWTGALLSPSRF 582
            LL A   +   C ++ R     A  LA A++ SD+  Y L R+G++P           E+LQ   + E S    +E+V L   DL E+  S+PY RG Y+   ++ +S RFNLD +L+  V++++ FPPQ+L +Q D+VA ETG+ IW +++ L A +  VR  L V +    G  +  D W  AL+SP RF
Sbjct:    5 LLAALAAVPVACSSVAR----SAEPLAEARIVSDFDTYTLRRIGLVPFAGDGLARARSEELQAAFFAEISAATPFEVVPLALRDLDEIRLSEPYRRGAYEPRMIIDLSRRFNLDAILIGTVTDQQYFPPQRLGIQVDMVAAETGLVIWSSSLQLDASKRRVRDSLRVWSQLDQGD-LDGDDWELALISPRRF 191          
BLAST of mRNA_M-pyrifera_M_contig84630.19725.1 vs. uniprot
Match: A0A7C8D1L9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C8D1L9_9BACT)

HSP 1 Score: 120 bits (302), Expect = 7.220e-31
Identity = 72/189 (38.10%), Postives = 104/189 (55.03%), Query Frame = 1
Query:   25 ALLLTTGCQTILRPRAVDAPNLAAAKVASDYQVYDLARVGVLPVTCHDATLEEREQLQEIVYNEFSQVVDYELVLLTEDDLAEVIASDPYLRGGYQGETVLGISERFNLDGLLVTIVSNRKAFPPQKLNVQADLVATETGMAIWHAAVSLQADRPDVRLGVEAFYGHGSPM---SADSWTGALLSPSRF 582
            ALL    C +   PR V+   LA A+VA D+  Y++ RVG++P+        +   L+  ++ EFS   D E+V L   DL E+     YLRG Y+   ++G + RF LD  LV  V+  + + PQ+L++Q DLVA+ETG  IW +++ L A    V+  VEAFY +   M   S + W  ALLSP  F
Sbjct:   10 ALLTLASCFSA--PREVE--TLARARVAPDFATYNIERVGLMPIVGSTLNAHQSSVLEGALFTEFSSGTDLEVVPLDSKDLEELNLGTSYLRGTYEPAAIIGAARRFRLDATLVVTVTEYQFYTPQRLSLQIDLVASETGAVIWSSSLHLDATTERVQRAVEAFYSNSGSMDNVSGNGWEIALLSPRLF 194          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84630.19725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7Y4SYG0_9BACT1.650e-4346.51Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2E5X5X9_9BACT3.510e-3742.86Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2D5W8S4_9BACT3.150e-3541.53Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A523PUX3_9BACT1.190e-3136.46Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7C8D1L9_9BACT7.220e-3138.10Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84630contigM-pyrifera_M_contig84630:292..873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size582
Cds size582
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816753.4271586-CDS-M-pyrifera_M_contig84630:291..8731622816753.4271586-CDS-M-pyrifera_M_contig84630:291..873Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84630 292..873 +
1692278158.044505-CDS-M-pyrifera_M_contig84630:291..8731692278158.044505-CDS-M-pyrifera_M_contig84630:291..873Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84630 292..873 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84630.19725.1prot_M-pyrifera_M_contig84630.19725.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84630 292..873 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84630.19725.1

>prot_M-pyrifera_M_contig84630.19725.1 ID=prot_M-pyrifera_M_contig84630.19725.1|Name=mRNA_M-pyrifera_M_contig84630.19725.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=194bp
MLKLLLPAALLLTTGCQTILRPRAVDAPNLAAAKVASDYQVYDLARVGVL
PVTCHDATLEEREQLQEIVYNEFSQVVDYELVLLTEDDLAEVIASDPYLR
GGYQGETVLGISERFNLDGLLVTIVSNRKAFPPQKLNVQADLVATETGMA
IWHAAVSLQADRPDVRLGVEAFYGHGSPMSADSWTGALLSPSRF
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mRNA from alignment at M-pyrifera_M_contig84630:292..873+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84630.19725.1 ID=mRNA_M-pyrifera_M_contig84630.19725.1|Name=mRNA_M-pyrifera_M_contig84630.19725.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig84630:292..873+ (Macrocystis pyrifera P11B4 male)
ATGCTGAAACTGCTCCTCCCGGCCGCGCTCCTGCTGACGACCGGCTGCCA GACGATCCTGCGCCCGCGCGCGGTCGACGCCCCGAACCTGGCCGCGGCCA AGGTCGCCTCCGACTATCAGGTCTACGACCTCGCGCGCGTGGGCGTCCTG CCGGTCACCTGCCACGACGCGACCCTCGAGGAGCGCGAGCAGCTGCAGGA GATCGTCTACAACGAGTTCAGCCAGGTCGTGGACTACGAGCTGGTGCTGT TGACCGAGGACGACCTCGCCGAGGTCATCGCTTCCGACCCGTACCTGCGC GGCGGCTACCAGGGCGAGACGGTGCTGGGCATCTCCGAGCGCTTCAACCT GGACGGCCTGCTCGTGACGATCGTGAGCAACCGCAAGGCGTTCCCGCCCC AGAAGCTGAACGTCCAGGCCGACCTGGTCGCAACCGAGACCGGCATGGCG ATCTGGCACGCAGCCGTGTCCCTACAGGCCGACCGCCCGGACGTCCGCCT GGGCGTGGAGGCGTTCTACGGCCACGGCTCCCCGATGAGCGCCGACTCCT GGACCGGCGCCCTCCTGTCCCCGTCGCGCTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84630:292..873+

>mRNA_M-pyrifera_M_contig84630.19725.1 ID=mRNA_M-pyrifera_M_contig84630.19725.1|Name=mRNA_M-pyrifera_M_contig84630.19725.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1164bp|location=Sequence derived from alignment at M-pyrifera_M_contig84630:292..873+ (Macrocystis pyrifera P11B4 male)
ATGCTGAAACTGCTCCTCCCGGCCGCGCTCCTGCTGACGACCGGCTGCCA
GACGATCCTGCGCCCGCGCGCGGTCGACGCCCCGAACCTGGCCGCGGCCA
AGGTCGCCTCCGACTATCAGGTCTACGACCTCGCGCGCGTGGGCGTCCTG
CCGGTCACCTGCCACGACGCGACCCTCGAGGAGCGCGAGCAGCTGCAGGA
GATCGTCTACAACGAGTTCAGCCAGGTCGTGGACTACGAGCTGGTGCTGT
TGACCGAGGACGACCTCGCCGAGGTCATCGCTTCCGACCCGTACCTGCGC
GGCGGCTACCAGGGCGAGACGGTGCTGGGCATCTCCGAGCGCTTCAACCT
GGACGGCCTGCTCGTGACGATCGTGAGCAACCGCAAGGCGTTCCCGCCCC
AGAAGCTGAACGTCCAGGCCGACCTGGTCGCAACCGAGACCGGCATGGCG
ATCTGGCACGCAGCCGTGTCCCTACAGGCCGACCGCCCGGACGTCCGCCT
GGGCGTGGAGGCGTTCTACGGCCACGGCTCCCCGATGAGCGCCGACTCCT
GGACCGGCGCCCTCCTGTCCCCGTCGCGCTTCATGCTGAAACTGCTCCTC
CCGGCCGCGCTCCTGCTGACGACCGGCTGCCAGACGATCCTGCGCCCGCG
CGCGGTCGACGCCCCGAACCTGGCCGCGGCCAAGGTCGCCTCCGACTATC
AGGTCTACGACCTCGCGCGCGTGGGCGTCCTGCCGGTCACCTGCCACGAC
GCGACCCTCGAGGAGCGCGAGCAGCTGCAGGAGATCGTCTACAACGAGTT
CAGCCAGGTCGTGGACTACGAGCTGGTGCTGTTGACCGAGGACGACCTCG
CCGAGGTCATCGCTTCCGACCCGTACCTGCGCGGCGGCTACCAGGGCGAG
ACGGTGCTGGGCATCTCCGAGCGCTTCAACCTGGACGGCCTGCTCGTGAC
GATCGTGAGCAACCGCAAGGCGTTCCCGCCCCAGAAGCTGAACGTCCAGG
CCGACCTGGTCGCAACCGAGACCGGCATGGCGATCTGGCACGCAGCCGTG
TCCCTACAGGCCGACCGCCCGGACGTCCGCCTGGGCGTGGAGGCGTTCTA
CGGCCACGGCTCCCCGATGAGCGCCGACTCCTGGACCGGCGCCCTCCTGT
CCCCGTCGCGCTTC
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