mRNA_M-pyrifera_M_contig8461.19721.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8461.19721.1
Unique NamemRNA_M-pyrifera_M_contig8461.19721.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8461.19721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8461contigM-pyrifera_M_contig8461:10362..11023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size662
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8461.19721.1prot_M-pyrifera_M_contig8461.19721.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8461 10578..10925 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816753.2328858-UTR-M-pyrifera_M_contig8461:10361..105771622816753.2328858-UTR-M-pyrifera_M_contig8461:10361..10577Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8461 10362..10577 +
1692278157.949615-UTR-M-pyrifera_M_contig8461:10361..105771692278157.949615-UTR-M-pyrifera_M_contig8461:10361..10577Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8461 10362..10577 +
1622816753.2599692-UTR-M-pyrifera_M_contig8461:10925..110231622816753.2599692-UTR-M-pyrifera_M_contig8461:10925..11023Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8461 10926..11023 +
1692278157.970679-UTR-M-pyrifera_M_contig8461:10925..110231692278157.970679-UTR-M-pyrifera_M_contig8461:10925..11023Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8461 10926..11023 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816753.248133-CDS-M-pyrifera_M_contig8461:10577..109251622816753.248133-CDS-M-pyrifera_M_contig8461:10577..10925Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8461 10578..10925 +
1692278157.960572-CDS-M-pyrifera_M_contig8461:10577..109251692278157.960572-CDS-M-pyrifera_M_contig8461:10577..10925Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8461 10578..10925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8461.19721.1

>prot_M-pyrifera_M_contig8461.19721.1 ID=prot_M-pyrifera_M_contig8461.19721.1|Name=mRNA_M-pyrifera_M_contig8461.19721.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
MVIMPAFRLTAPSDVCMDLRLRKVLIDACDQLRWTKSSFFCCLFFTYLVH
SSRWCVVVGVLRCLLVCKVVRGVAIPSVEGLFFVEYLPIFILIRRIVKRL
QDPRPELRIPQLVFG*
back to top

mRNA from alignment at M-pyrifera_M_contig8461:10362..11023+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8461.19721.1 ID=mRNA_M-pyrifera_M_contig8461.19721.1|Name=mRNA_M-pyrifera_M_contig8461.19721.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=662bp|location=Sequence derived from alignment at M-pyrifera_M_contig8461:10362..11023+ (Macrocystis pyrifera P11B4 male)
GCACAGCAGCAGTCGATTATTTTTTGTCCGTGGCTACTCGTAGACAGAAG
AGCAGCGACGAAGAGTGCTGCGCCGTGAAAAGTGTATGCGCGAGAAAGGC
TTAAAAATGTTGAGGTGTCCGGCGCAAACGCCAACAAACGTCGAGAGTTG
TTGCTCGCTGCCGGTATTTGTGAAGCGCATCGGCACGTTGAGGAGGAGGC
CTTGGTGGCGGGGAGTATGGTCATCATGCCGGCGTTTAGATTGACGGCCC
CGTCCGATGTCTGTATGGACTTAAGGTTGCGTAAAGTGTTGATAGATGCC
TGCGACCAGTTACGATGGACGAAGTCGTCGTTTTTTTGTTGCCTTTTTTT
TACGTATCTGGTTCACAGCAGTAGGTGGTGCGTGGTTGTTGGTGTGCTAA
GGTGCTTGTTAGTGTGCAAGGTAGTGCGAGGCGTTGCAATTCCAAGTGTG
GAGGGGCTGTTTTTTGTGGAATATTTGCCCATTTTTATCTTGATTCGAAG
GATCGTTAAACGTCTTCAAGATCCTCGCCCCGAACTTCGTATACCCCAGC
TGGTGTTCGGATAAATACCACCAGCGGTGGGCTAGACTTAGTCGCGTGAC
CTGTTGTTGTTGATGTGGGTTTTCATTCATGGATTCGATTATCGGTACAT
ATTAATCAAAAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig8461:10362..11023+

>mRNA_M-pyrifera_M_contig8461.19721.1 ID=mRNA_M-pyrifera_M_contig8461.19721.1|Name=mRNA_M-pyrifera_M_contig8461.19721.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig8461:10362..11023+ (Macrocystis pyrifera P11B4 male)
ATGGTCATCATGCCGGCGTTTAGATTGACGGCCCCGTCCGATGTCTGTAT
GGACTTAAGGTTGCGTAAAGTGTTGATAGATGCCTGCGACCAGTTACGAT
GGACGAAGTCGTCGTTTTTTTGTTGCCTTTTTTTTACGTATCTGGTTCAC
AGCAGTAGGTGGTGCGTGGTTGTTGGTGTGCTAAGGTGCTTGTTAGTGTG
CAAGGTAGTGCGAGGCGTTGCAATTCCAAGTGTGGAGGGGCTGTTTTTTG
TGGAATATTTGCCCATTTTTATCTTGATTCGAAGGATCGTTAAACGTCTT
CAAGATCCTCGCCCCGAACTTCGTATACCCCAGCTGGTGTTCGGATAAAT
GGTCATCATGCCGGCGTTTAGATTGACGGCCCCGTCCGATGTCTGTATGG
ACTTAAGGTTGCGTAAAGTGTTGATAGATGCCTGCGACCAGTTACGATGG
ACGAAGTCGTCGTTTTTTTGTTGCCTTTTTTTTACGTATCTGGTTCACAG
CAGTAGGTGGTGCGTGGTTGTTGGTGTGCTAAGGTGCTTGTTAGTGTGCA
AGGTAGTGCGAGGCGTTGCAATTCCAAGTGTGGAGGGGCTGTTTTTTGTG
GAATATTTGCCCATTTTTATCTTGATTCGAAGGATCGTTAAACGTCTTCA
AGATCCTCGCCCCGAACTTCGTATACCCCAGCTGGTGTTCGGATAA
back to top