mRNA_M-pyrifera_M_contig84567.19716.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84567.19716.1
Unique NamemRNA_M-pyrifera_M_contig84567.19716.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig84567.19716.1 vs. uniprot
Match: A0A024TZN8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TZN8_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.680e-9
Identity = 43/131 (32.82%), Postives = 68/131 (51.91%), Query Frame = 1 
Query:   13 THVRATMAMLLGVALGFSTVENFEYVMASPNIVVAIVESLIRSAISMPLHATAAGFTAVEFGFRDMRFRDGEDIPWWDLLRVIAPAVLVHGTFDACAFLIPIFVQ-DQLVASGIELGVAVAVLAISLFFLN 402
            T  R  +   + V  GFST+EN  Y   +P++ + +  + IRSA++ PLH   A  T +    + +R         WD+LR IAPA+L+HG +D  AFL   +++ D    S + L  +V  L +   +LN
Sbjct:  502 TSPRQVVLGFIVVGCGFSTMENALYAFLAPSLAMQLWTAAIRSALATPLHMICASLTGMHLVLQ-LRQNPPTTRSRWDVLRAIAPAMLLHGVYDLQAFLFTFWLEVDD--GSVMSLSASVLCLVVGGLYLN 629
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BLAST of mRNA_M-pyrifera_M_contig84567.19716.1 vs. uniprot
Match: A0A3R6VBL1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6VBL1_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.390e-8
Identity = 42/131 (32.06%), Postives = 67/131 (51.15%), Query Frame = 1 
Query:   13 THVRATMAMLLGVALGFSTVENFEYVMASPNIVVAIVESLIRSAISMPLHATAAGFTAVEFGFRDMRFRDGEDIPWWDLLRVIAPAVLVHGTFDACAFLIPIFVQ-DQLVASGIELGVAVAVLAISLFFLN 402
            T  R  +   + V  GFST+EN  Y   +P++ + +  + IRSA++ PLH   A  T +    + +          WD+LR IAPA+L+HG +D  AFL   +++ D    S + L  +V  L +   +LN
Sbjct:  325 TSPRQVVLGFVVVGCGFSTMENALYAFLAPSLAMQLWTAAIRSAVATPLHMICASLTGMHLVLQ-LPQNPPTTRSRWDVLRAIAPAMLLHGVYDLQAFLFTFWLEVDD--GSVMSLSASVLCLVVGGLYLN 452
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84567.19716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A024TZN8_9STRA1.680e-932.82Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A3R6VBL1_9STRA1.390e-832.06Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84567contigM-pyrifera_M_contig84567:85..486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue2.7e-08
Seed eggNOG ortholog157072.XP_008872014.1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Protease prsW family
EggNOG OGs2CZVY@1,2SBWE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size402
Cds size372
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816753.0030916-UTR-M-pyrifera_M_contig84567:84..1141622816753.0030916-UTR-M-pyrifera_M_contig84567:84..114Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84567 85..114 +
1692278157.8306332-UTR-M-pyrifera_M_contig84567:84..1141692278157.8306332-UTR-M-pyrifera_M_contig84567:84..114Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84567 85..114 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816753.014583-CDS-M-pyrifera_M_contig84567:114..4861622816753.014583-CDS-M-pyrifera_M_contig84567:114..486Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84567 115..486 +
1692278157.844749-CDS-M-pyrifera_M_contig84567:114..4861692278157.844749-CDS-M-pyrifera_M_contig84567:114..486Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84567 115..486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84567.19716.1prot_M-pyrifera_M_contig84567.19716.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84567 115..486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84567.19716.1

>prot_M-pyrifera_M_contig84567.19716.1 ID=prot_M-pyrifera_M_contig84567.19716.1|Name=mRNA_M-pyrifera_M_contig84567.19716.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
MAMLLGVALGFSTVENFEYVMASPNIVVAIVESLIRSAISMPLHATAAGF
TAVEFGFRDMRFRDGEDIPWWDLLRVIAPAVLVHGTFDACAFLIPIFVQD
QLVASGIELGVAVAVLAISLFFLN
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mRNA from alignment at M-pyrifera_M_contig84567:85..486+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84567.19716.1 ID=mRNA_M-pyrifera_M_contig84567.19716.1|Name=mRNA_M-pyrifera_M_contig84567.19716.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig84567:85..486+ (Macrocystis pyrifera P11B4 male)
CAGCCTCAGCCGACGCATGTGCGAGCGACGATGGCGATGCTGCTGGGAGT
GGCGCTTGGCTTTAGTACTGTGGAGAATTTTGAGTACGTCATGGCCTCTC
CCAACATCGTAGTGGCCATTGTAGAGAGTCTCATTCGTTCCGCAATTTCC
ATGCCCTTGCATGCCACTGCTGCCGGATTCACTGCTGTCGAGTTTGGATT
CCGTGATATGCGATTCCGTGATGGAGAAGACATCCCATGGTGGGACCTCC
TCCGCGTCATCGCCCCGGCTGTCCTCGTCCACGGCACCTTTGATGCCTGC
GCCTTCCTCATCCCAATCTTTGTCCAAGACCAGCTCGTTGCCTCCGGCAT
TGAACTCGGCGTCGCTGTCGCTGTCCTCGCCATCTCGCTCTTCTTCCTCA
AC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84567:85..486+

>mRNA_M-pyrifera_M_contig84567.19716.1 ID=mRNA_M-pyrifera_M_contig84567.19716.1|Name=mRNA_M-pyrifera_M_contig84567.19716.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig84567:85..486+ (Macrocystis pyrifera P11B4 male)
ATGGCGATGCTGCTGGGAGTGGCGCTTGGCTTTAGTACTGTGGAGAATTT
TGAGTACGTCATGGCCTCTCCCAACATCGTAGTGGCCATTGTAGAGAGTC
TCATTCGTTCCGCAATTTCCATGCCCTTGCATGCCACTGCTGCCGGATTC
ACTGCTGTCGAGTTTGGATTCCGTGATATGCGATTCCGTGATGGAGAAGA
CATCCCATGGTGGGACCTCCTCCGCGTCATCGCCCCGGCTGTCCTCGTCC
ACGGCACCTTTGATGCCTGCGCCTTCCTCATCCCAATCTTTGTCCAAGAC
CAGCTCGTTGCCTCCGGCATTGAACTCGGCGTCGCTGTCGCTGTCCTCGC
CATCTCGCTCTTCTTCCTCAACATGGCGATGCTGCTGGGAGTGGCGCTTG
GCTTTAGTACTGTGGAGAATTTTGAGTACGTCATGGCCTCTCCCAACATC
GTAGTGGCCATTGTAGAGAGTCTCATTCGTTCCGCAATTTCCATGCCCTT
GCATGCCACTGCTGCCGGATTCACTGCTGTCGAGTTTGGATTCCGTGATA
TGCGATTCCGTGATGGAGAAGACATCCCATGGTGGGACCTCCTCCGCGTC
ATCGCCCCGGCTGTCCTCGTCCACGGCACCTTTGATGCCTGCGCCTTCCT
CATCCCAATCTTTGTCCAAGACCAGCTCGTTGCCTCCGGCATTGAACTCG
GCGTCGCTGTCGCTGTCCTCGCCATCTCGCTCTTCTTCCTCAAC
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