mRNA_M-pyrifera_M_contig84556.19714.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84556.19714.1
Unique NamemRNA_M-pyrifera_M_contig84556.19714.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84556.19714.1 vs. uniprot
Match: A0A197JI65_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JI65_9FUNG)

HSP 1 Score: 70.1 bits (170), Expect = 5.500e-12
Identity = 45/143 (31.47%), Postives = 78/143 (54.55%), Query Frame = 1
Query:   31 LYRSIETAEQQWDALEQAPKDAWRGRLYDLVERYLLTYIYPAETLCKAVEVPGPESPDVGYQVRLPAILHPERYEREEVLSQLRQTLLDAHA-YHKKWSFWSGCSLGLTGALFAIPGPPNVPFYWNAFRSYSHYRATRGSHYL 456
            L R+   A ++W+ L QA  D+ + +LY      +L  I   ET  K  EVP  E   +   VR+P  ++P   +  +V ++ + TL+D    YH+K+  +S   + +T     +P  PN+PF++NA+R +SH++A  G+ +L
Sbjct:   29 LNRATVFASKKWEGLAQAKPDSMKRKLYS-AGTTMLEKIEHRETFFK--EVPAKEDVTITTMVRVP-FMYPSSLKEAQVHAEFK-TLVDQRIPYHRKYMIYSAMWVPVTSLFTIVPLVPNIPFFYNAYRLWSHWKAYNGAKHL 166          
BLAST of mRNA_M-pyrifera_M_contig84556.19714.1 vs. uniprot
Match: A0A1Q3D4S5_CEPFO (Mit_KHE1 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3D4S5_CEPFO)

HSP 1 Score: 71.2 bits (173), Expect = 6.980e-12
Identity = 47/132 (35.61%), Postives = 69/132 (52.27%), Query Frame = 1
Query:   64 WDALEQAPKDAWRGRLYDLVERYLLTYIYPAETLCKAVEVPGPESPDVGYQVRLPAILHPERYEREEVLSQLRQTLLDAHAYHKKWSFWSGCSLGLTGALFAIPGPPNVPFYWNAFRSYSHYRATRGSHYLL 459
            W  LE+AP+ + + +L+ L  R LLT + P+E   K++            +V    + +P   +   V  +LR   L     HKK+ + S   L LT AL  +P  PNVPF+W  FR+YSH+RA +GS  LL
Sbjct:   73 WIGLEKAPEGSLKNKLHGLGLR-LLTRVKPSELFLKSI----------SKEVTNVQVTYPSSLDARLVRRRLRHIALRGTIIHKKYFYGSVSLLPLTSALSVLP-LPNVPFFWVLFRTYSHWRALKGSEKLL 192          
BLAST of mRNA_M-pyrifera_M_contig84556.19714.1 vs. uniprot
Match: A0A5B7BKY0_DAVIN (Uncharacterized protein n=3 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BKY0_DAVIN)

HSP 1 Score: 68.9 bits (167), Expect = 2.350e-11
Identity = 42/132 (31.82%), Postives = 68/132 (51.52%), Query Frame = 1
Query:   64 WDALEQAPKDAWRGRLYDLVERYLLTYIYPAETLCKAVEVPGPESPDVGYQVRLPAILHPERYEREEVLSQLRQTLLDAHAYHKKWSFWSGCSLGLTGALFAIPGPPNVPFYWNAFRSYSHYRATRGSHYLL 459
            W  LE+AP  +++ +LY L  R LL+ + P+E   K++            +V    +++P       V  +LR   +     HK++ + S   L +T A   +P  PN+PF+W  FR+YSH+RA +GS  LL
Sbjct:    5 WAGLEKAPDGSFKNKLYGLGLR-LLSRVKPSEIFLKSI----------SKEVTKVEVIYPSSLNARLVRRRLRHIAVRGFVIHKRYFYGSVSLLPITSAFAVLP-LPNIPFFWILFRTYSHWRALKGSERLL 124          
BLAST of mRNA_M-pyrifera_M_contig84556.19714.1 vs. uniprot
Match: A0A2R6R0J3_ACTCC (Uncharacterized protein n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6R0J3_ACTCC)

HSP 1 Score: 69.7 bits (169), Expect = 2.810e-11
Identity = 48/133 (36.09%), Postives = 70/133 (52.63%), Query Frame = 1
Query:   64 WDALEQAPKDAWRGRLYDLVERYLLTYIYPAETLCKAVEVPGPESPDVG-YQVRLPAILHPERYEREEVLSQLRQTLLDAHAYHKKWSFWSGCSLGLTGALFAIPGPPNVPFYWNAFRSYSHYRATRGSHYLL 459
            W  LE+AP  +++ +LY L  R LL  I P+E   K++      S +VG  ++  P  L+     R     +LR   L     HK++ + S   L LT A   +P  PN+PF+W  FR+YSH+RA +GS  LL
Sbjct:   72 WTGLEKAPPGSFKNKLYGLGLR-LLARIKPSEIFLKSI------SKEVGEVEITFPTSLNARLARR-----RLRHIALRGTVIHKRYFYGSVSLLPLTAAFAVLP-LPNIPFFWMLFRTYSHWRALKGSERLL 191          
BLAST of mRNA_M-pyrifera_M_contig84556.19714.1 vs. uniprot
Match: A0A5B6YN86_DAVIN (Uncharacterized protein n=2 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6YN86_DAVIN)

HSP 1 Score: 68.2 bits (165), Expect = 4.560e-11
Identity = 41/132 (31.06%), Postives = 68/132 (51.52%), Query Frame = 1
Query:   64 WDALEQAPKDAWRGRLYDLVERYLLTYIYPAETLCKAVEVPGPESPDVGYQVRLPAILHPERYEREEVLSQLRQTLLDAHAYHKKWSFWSGCSLGLTGALFAIPGPPNVPFYWNAFRSYSHYRATRGSHYLL 459
            W  LE+AP  +++ +LY L  R LL+ + P+E   K++            +V    +++P       V  +LR   +     HK++ + S   L +T A   +P  PN+PF+W  FR+YSH+RA +GS  L+
Sbjct:    5 WAGLEKAPDGSFKNKLYGLGLR-LLSRVKPSEIFLKSI----------SKEVTKVEVIYPSSLNARLVRRRLRHIAVRGFVIHKRYFYGSVSLLPITSAFAVLP-LPNIPFFWILFRTYSHWRALKGSERLI 124          
BLAST of mRNA_M-pyrifera_M_contig84556.19714.1 vs. uniprot
Match: A0A7J0FH77_9ERIC (Regulatory particle triple-A 1A n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0FH77_9ERIC)

HSP 1 Score: 70.1 bits (170), Expect = 4.630e-11
Identity = 49/133 (36.84%), Postives = 70/133 (52.63%), Query Frame = 1
Query:   64 WDALEQAPKDAWRGRLYDLVERYLLTYIYPAETLCKAVEVPGPESPDVG-YQVRLPAILHPERYEREEVLSQLRQTLLDAHAYHKKWSFWSGCSLGLTGALFAIPGPPNVPFYWNAFRSYSHYRATRGSHYLL 459
            W  LE+AP  +++ +LY L  R LL  I P+E   K++      S +VG  +V  P  L+     R     +LR   L     HK++ + S   L LT A   +P  PN+PF+W  FR+YSH+RA +GS  LL
Sbjct:   90 WTGLEKAPPGSFKNKLYGLGLR-LLARIKPSEIFLKSI------SKEVGEVEVTFPTSLNARLARR-----RLRHIALRGTVIHKRYFYGSVSLLPLTAAFAVLP-LPNIPFFWMLFRTYSHWRALKGSERLL 209          
BLAST of mRNA_M-pyrifera_M_contig84556.19714.1 vs. uniprot
Match: UPI0010A3002C (uncharacterized protein C23H3.12c-like n=2 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A3002C)

HSP 1 Score: 68.9 bits (167), Expect = 4.830e-11
Identity = 40/128 (31.25%), Postives = 69/128 (53.91%), Query Frame = 1
Query:   64 WDALEQAPKDAWRGRLYDLVERYLLTYIYPAETLCKAVEVPGPESPDVGYQVRLPAILHPERYEREEVLSQLRQTLLDAHAYHKKWSFWSGCSLGLTGALFAIPGPPNVPFYWNAFRSYSHYRATRGS 447
            W  LE+AP+ +++ +++ L  R LL+ + P+E   +++             +    +++P   +   V  +LR   +     HKK+ + S   L LT +L  +P  PNVPF+WN FR+YSH+RA +GS
Sbjct:   70 WIGLEKAPEGSFKNKVHGLGLR-LLSRVKPSEIFLRSITK----------DITRVEVIYPSSLDARLVRRRLRHVAMRGTIIHKKYLYGSVSMLPLTSSLAVLP-MPNVPFFWNLFRAYSHWRALQGS 185          
BLAST of mRNA_M-pyrifera_M_contig84556.19714.1 vs. uniprot
Match: A0A6J1CZZ6_MOMCH (uncharacterized protein LOC111016104 isoform X1 n=2 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1CZZ6_MOMCH)

HSP 1 Score: 68.9 bits (167), Expect = 5.280e-11
Identity = 46/133 (34.59%), Postives = 72/133 (54.14%), Query Frame = 1
Query:   64 WDALEQAPKDAWRGRLYDLVERYLLTYIYPAETLCKAVEVPGPESPDV-GYQVRLPAILHPERYEREEVLSQLRQTLLDAHAYHKKWSFWSGCSLGLTGALFAIPGPPNVPFYWNAFRSYSHYRATRGSHYLL 459
            W ALE AP  +++ +L+ +  + LL+ + P E   K++      + DV   ++  P+ L+P    R     +LR   L   A HKK+ + S   L +T A   +P  PN+PF+W  FR+YSH+RA +GS  LL
Sbjct:   79 WTALENAPNGSFKNKLHGIGLK-LLSRVKPDEIFLKSI------TKDVTNVEITYPSSLNPRLVRR-----RLRHIALRGTAIHKKYFYGSVSLLPVTSAFTVLP-LPNIPFFWVLFRTYSHWRALKGSEKLL 198          
BLAST of mRNA_M-pyrifera_M_contig84556.19714.1 vs. uniprot
Match: A0A6J1KLS4_CUCMA (uncharacterized protein LOC111494421 n=2 Tax=Cucurbita TaxID=3660 RepID=A0A6J1KLS4_CUCMA)

HSP 1 Score: 68.2 bits (165), Expect = 1.010e-10
Identity = 48/136 (35.29%), Postives = 75/136 (55.15%), Query Frame = 1
Query:   64 WDALEQAPKDAWRGRLYDLVERYLLTYIYPAETLCKAVEVPGPESPDV-GYQVRLPAILHPERYEREEVLSQLRQTLLDAHAYHKKWSFWSGCSLGLTGALFAIPGPPNVPFYWNAFRSYSHYRATRGSHYLLLQL 468
            W ALE+AP  +++ +L+ +  + LL+ + P+E   K++      + DV   ++  P+ L+P    R     +LR   L   A HKK  + S   L L  A   +P  PN+PF+W  FR+YSH+RA +GS  +LLQL
Sbjct:   79 WTALEKAPDGSFKNKLHGIGLK-LLSRVKPSEIFLKSI------TKDVTSVEIAYPSSLNPRLVRR-----RLRHIALRGTAIHKKHFYGSVSLLPLASAFTILP-LPNIPFFWVLFRTYSHWRALKGSE-ILLQL 200          
BLAST of mRNA_M-pyrifera_M_contig84556.19714.1 vs. uniprot
Match: A0A2G5E3W4_AQUCA (Uncharacterized protein n=2 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5E3W4_AQUCA)

HSP 1 Score: 67.4 bits (163), Expect = 1.350e-10
Identity = 45/133 (33.83%), Postives = 69/133 (51.88%), Query Frame = 1
Query:   64 WDALEQAPKDAWRGRLYDLVERYLLTYIYPAETLCKAVEVPGPESPDV-GYQVRLPAILHPERYEREEVLSQLRQTLLDAHAYHKKWSFWSGCSLGLTGALFAIPGPPNVPFYWNAFRSYSHYRATRGSHYLL 459
            W  LE AP+ + + +++  V  +LL+ + P+E   K++      S D+   +V  P  L P    R     +LR   +     H+K+ + S   L  T AL  +P  PNVPF+W  FR+YSH+RA +GS  LL
Sbjct:   76 WTGLENAPQGSVKNKIHS-VGLFLLSRVKPSEIFLKSI------SKDITNVEVTYPTSLDPRLVRR-----RLRHIAMRGTVIHRKYFYGSVTLLPFTSALAVLP-LPNVPFFWMLFRTYSHWRALKGSERLL 195          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84556.19714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A197JI65_9FUNG5.500e-1231.47Uncharacterized protein (Fragment) n=1 Tax=Linnema... [more]
A0A1Q3D4S5_CEPFO6.980e-1235.61Mit_KHE1 domain-containing protein n=1 Tax=Cephalo... [more]
A0A5B7BKY0_DAVIN2.350e-1131.82Uncharacterized protein n=3 Tax=Davidia involucrat... [more]
A0A2R6R0J3_ACTCC2.810e-1136.09Uncharacterized protein n=1 Tax=Actinidia chinensi... [more]
A0A5B6YN86_DAVIN4.560e-1131.06Uncharacterized protein n=2 Tax=Davidia involucrat... [more]
A0A7J0FH77_9ERIC4.630e-1136.84Regulatory particle triple-A 1A n=1 Tax=Actinidia ... [more]
UPI0010A3002C4.830e-1131.25uncharacterized protein C23H3.12c-like n=2 Tax=Pro... [more]
A0A6J1CZZ6_MOMCH5.280e-1134.59uncharacterized protein LOC111016104 isoform X1 n=... [more]
A0A6J1KLS4_CUCMA1.010e-1035.29uncharacterized protein LOC111494421 n=2 Tax=Cucur... [more]
A0A2G5E3W4_AQUCA1.350e-1033.83Uncharacterized protein n=2 Tax=Aquilegia coerulea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84556contigM-pyrifera_M_contig84556:232..780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score72.8
Seed ortholog evalue1.6e-10
Seed eggNOG ortholog36080.S2JFC3
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006839,GO:0008150,GO:0009987,GO:0015672,GO:0016020,GO:0016021,GO:0019866,GO:0030001,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031975,GO:0032592,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071804,GO:0071805,GO:0098573,GO:0098655,GO:0098660,GO:0098662,GO:0140141,GO:1990542
EggNOG free text desc.Mitochondrial K -H exchange-related
EggNOG OGs1GTY0@112252,39Z5X@33154,3P130@4751,KOG4539@1,KOG4539@2759
COG Functional cat.S
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
Exons2
Model size474
Cds size474
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816752.926631-CDS-M-pyrifera_M_contig84556:231..4741622816752.926631-CDS-M-pyrifera_M_contig84556:231..474Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84556 232..474 -
1692278157.7917588-CDS-M-pyrifera_M_contig84556:231..4741692278157.7917588-CDS-M-pyrifera_M_contig84556:231..474Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84556 232..474 -
1622816752.9386907-CDS-M-pyrifera_M_contig84556:549..7801622816752.9386907-CDS-M-pyrifera_M_contig84556:549..780Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84556 550..780 -
1692278157.8073404-CDS-M-pyrifera_M_contig84556:549..7801692278157.8073404-CDS-M-pyrifera_M_contig84556:549..780Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84556 550..780 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84556.19714.1prot_M-pyrifera_M_contig84556.19714.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84556 232..780 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84556.19714.1

>prot_M-pyrifera_M_contig84556.19714.1 ID=prot_M-pyrifera_M_contig84556.19714.1|Name=mRNA_M-pyrifera_M_contig84556.19714.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=158bp
MRAVHATQWILYRSIETAEQQWDALEQAPKDAWRGRLYDLVERYLLTYIY
PAETLCKAVEVPGPESPDVGYQVRLPAILHPERYEREEVLSQLRQTLLDA
HAYHKKWSFWSGCSLGLTGALFAIPGPPNVPFYWNAFRSYSHYRATRGSH
YLLLQLHR
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mRNA from alignment at M-pyrifera_M_contig84556:232..780-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84556.19714.1 ID=mRNA_M-pyrifera_M_contig84556.19714.1|Name=mRNA_M-pyrifera_M_contig84556.19714.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=549bp|location=Sequence derived from alignment at M-pyrifera_M_contig84556:232..780- (Macrocystis pyrifera P11B4 male)
ATGCGAGCAGTTCATGCTACTCAATGGATCTTGTACAGAAGCATCGAGAC GGCGGAGCAGCAGTGGGACGCGCTCGAGCAGGCGCCAAAGGACGCGTGGC GGGGCCGCCTCTACGACTTGGTGGAGCGCTACCTGCTAACCTACATCTAT CCGGCAGAGACCCTTTGCAAAGCAGTGGAAGTGCCAGGTCCTGAGTCGCC AGACGTAGGCTACCAGGTACGACTTCCTGCAGTCCGTTGAAGGCGTCGAA GCGGCACACGCCCCAGCCGAGATGAACCGCTGATGTTTGCTGACGGCAAA GCCTAGATTCTTCATCCTGAGCGGTATGAGAGAGAGGAAGTTCTGAGTCA GCTGCGGCAGACCCTGCTGGATGCTCATGCGTATCACAAGAAGTGGTCCT TTTGGAGTGGCTGCTCCCTTGGCCTTACTGGTGCTCTCTTTGCTATACCA GGGCCACCGAATGTGCCATTCTACTGGAATGCCTTCCGCAGCTATAGCCA CTATCGAGCCACCAGAGGCTCGCACTACCTCTTGCTGCAGCTCCATCGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84556:232..780-

>mRNA_M-pyrifera_M_contig84556.19714.1 ID=mRNA_M-pyrifera_M_contig84556.19714.1|Name=mRNA_M-pyrifera_M_contig84556.19714.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=948bp|location=Sequence derived from alignment at M-pyrifera_M_contig84556:232..780- (Macrocystis pyrifera P11B4 male)
ATGCGAGCAGTTCATGCTACTCAATGGATCTTGTACAGAAGCATCGAGAC
GGCGGAGCAGCAGTGGGACGCGCTCGAGCAGGCGCCAAAGGACGCGTGGC
GGGGCCGCCTCTACGACTTGGTGGAGCGCTACCTGCTAACCTACATCTAT
CCGGCAGAGACCCTTTGCAAAGCAGTGGAAGTGCCAGGTCCTGAGTCGCC
AGACGTAGGCTACCAGGTACGACTTCCTGCAATGCGAGCAGTTCATGCTA
CTCAATGGATCTTGTACAGAAGCATCGAGACGGCGGAGCAGCAGTGGGAC
GCGCTCGAGCAGGCGCCAAAGGACGCGTGGCGGGGCCGCCTCTACGACTT
GGTGGAGCGCTACCTGCTAACCTACATCTATCCGGCAGAGACCCTTTGCA
AAGCAGTGGAAGTGCCAGGTCCTGAGTCGCCAGACGTAGGCTACCAGGTA
CGACTTCCTGCAATTCTTCATCCTGAGCGGTATGAGAGAGAGGAAGTTCT
GAGTCAGCTGCGGCAGACCCTGCTGGATGCTCATGCGTATCACAAGAAGT
GGTCCTTTTGGAGTGGCTGCTCCCTTGGCCTTACTGGTGCTCTCTTTGCT
ATACCAGGGCCACCGAATGTGCCATTCTACTGGAATGCCTTCCGCAGCTA
TAGCCACTATCGAGCCACCAGAGGCTCGCACTACCTCTTGCTGCAGCTCC
ATCGTATTCTTCATCCTGAGCGGTATGAGAGAGAGGAAGTTCTGAGTCAG
CTGCGGCAGACCCTGCTGGATGCTCATGCGTATCACAAGAAGTGGTCCTT
TTGGAGTGGCTGCTCCCTTGGCCTTACTGGTGCTCTCTTTGCTATACCAG
GGCCACCGAATGTGCCATTCTACTGGAATGCCTTCCGCAGCTATAGCCAC
TATCGAGCCACCAGAGGCTCGCACTACCTCTTGCTGCAGCTCCATCGT
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