mRNA_M-pyrifera_M_contig84553.19712.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84553.19712.1
Unique NamemRNA_M-pyrifera_M_contig84553.19712.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig84553.19712.1 vs. uniprot
Match: A0A2E3MHY5_9GAMM (Uncharacterized protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E3MHY5_9GAMM)

HSP 1 Score: 98.2 bits (243), Expect = 9.320e-21
Identity = 62/191 (32.46%), Postives = 105/191 (54.97%), Query Frame = 1 
Query:   37 IENATNPAKARAIALKQFDSNLLYSMETIFTERKATLFDLNEPSTPVK-KYNVMHPLGLAISSANVAATKIFLQYFDKETINDSATFVWGYRQAYTPMHLVMDPWAKIDVLVLPKERAQHLLAKKLSRIITMLAEVGADPNHIEKDIYANPAISAGEARNHGMLPKNIVVELQAKLISVGANPYYVGTSYF 606
            ++ AT+  +A AIA K F  +++  M T  T     +F+ +EP   ++ K + M+ + LA+S  N+AA    L+YF KE IN     VWGYR+A++P+H+ ++P       +L  + A      +L+ II +L + G +P+   K  Y N  ++ G  R H  L   ++ +L+A+L+  GA+P   GT +F
Sbjct:   27 VKAATSREEAFAIATKPFSESIIQKM-TEDTFSAEAVFN-SEPQDNIEPKCDAMNGIALAVSRGNIAACVELLKYFTKEDINSKDITVWGYREAFSPLHIALNPTINRTASLLEIDDAY---VSRLATIIRLLIDKGIEPDIRFKGHYNNQPMAGGTGRGHDYLDARLLNQLRAELLLGGADPTLKGTYFF 212
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84553.19712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2E3MHY5_9GAMM9.320e-2132.46Uncharacterized protein n=1 Tax=Legionellales bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84553contigM-pyrifera_M_contig84553:76..690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size615
Cds size594
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816752.8266637-UTR-M-pyrifera_M_contig84553:75..961622816752.8266637-UTR-M-pyrifera_M_contig84553:75..96Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84553 76..96 +
1692278157.7251189-UTR-M-pyrifera_M_contig84553:75..961692278157.7251189-UTR-M-pyrifera_M_contig84553:75..96Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84553 76..96 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816752.8393402-CDS-M-pyrifera_M_contig84553:96..6901622816752.8393402-CDS-M-pyrifera_M_contig84553:96..690Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84553 97..690 +
1692278157.7411351-CDS-M-pyrifera_M_contig84553:96..6901692278157.7411351-CDS-M-pyrifera_M_contig84553:96..690Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84553 97..690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84553.19712.1prot_M-pyrifera_M_contig84553.19712.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84553 97..690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84553.19712.1

>prot_M-pyrifera_M_contig84553.19712.1 ID=prot_M-pyrifera_M_contig84553.19712.1|Name=mRNA_M-pyrifera_M_contig84553.19712.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=198bp
MALTAIENATNPAKARAIALKQFDSNLLYSMETIFTERKATLFDLNEPST
PVKKYNVMHPLGLAISSANVAATKIFLQYFDKETINDSATFVWGYRQAYT
PMHLVMDPWAKIDVLVLPKERAQHLLAKKLSRIITMLAEVGADPNHIEKD
IYANPAISAGEARNHGMLPKNIVVELQAKLISVGANPYYVGTSYFPMV
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mRNA from alignment at M-pyrifera_M_contig84553:76..690+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84553.19712.1 ID=mRNA_M-pyrifera_M_contig84553.19712.1|Name=mRNA_M-pyrifera_M_contig84553.19712.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=615bp|location=Sequence derived from alignment at M-pyrifera_M_contig84553:76..690+ (Macrocystis pyrifera P11B4 male)
CGTTGCAATGAAATAGTAGCCATGGCACTTACCGCCATAGAAAACGCAAC
AAATCCAGCTAAGGCTCGTGCGATAGCACTCAAACAGTTTGATTCAAACT
TGCTCTATTCTATGGAAACAATTTTCACAGAACGTAAGGCAACGCTTTTT
GATTTAAATGAACCATCAACTCCTGTTAAAAAATATAACGTAATGCACCC
ACTAGGGTTGGCAATTTCATCGGCCAATGTTGCAGCAACCAAAATCTTTC
TTCAATATTTTGATAAAGAAACAATCAATGATTCTGCAACCTTTGTTTGG
GGCTACAGGCAAGCCTATACGCCTATGCATTTGGTGATGGATCCTTGGGC
AAAGATTGATGTTCTTGTGCTTCCTAAAGAGAGAGCTCAACATCTTCTGG
CTAAAAAATTATCTAGGATAATAACCATGCTGGCTGAAGTTGGCGCCGAT
CCAAACCATATTGAAAAAGATATCTATGCGAATCCGGCAATAAGCGCTGG
TGAAGCACGTAATCATGGTATGCTTCCAAAAAACATTGTCGTAGAATTAC
AAGCCAAATTAATTTCAGTTGGAGCAAATCCGTATTATGTTGGCACGTCC
TACTTTCCTATGGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84553:76..690+

>mRNA_M-pyrifera_M_contig84553.19712.1 ID=mRNA_M-pyrifera_M_contig84553.19712.1|Name=mRNA_M-pyrifera_M_contig84553.19712.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1188bp|location=Sequence derived from alignment at M-pyrifera_M_contig84553:76..690+ (Macrocystis pyrifera P11B4 male)
ATGGCACTTACCGCCATAGAAAACGCAACAAATCCAGCTAAGGCTCGTGC
GATAGCACTCAAACAGTTTGATTCAAACTTGCTCTATTCTATGGAAACAA
TTTTCACAGAACGTAAGGCAACGCTTTTTGATTTAAATGAACCATCAACT
CCTGTTAAAAAATATAACGTAATGCACCCACTAGGGTTGGCAATTTCATC
GGCCAATGTTGCAGCAACCAAAATCTTTCTTCAATATTTTGATAAAGAAA
CAATCAATGATTCTGCAACCTTTGTTTGGGGCTACAGGCAAGCCTATACG
CCTATGCATTTGGTGATGGATCCTTGGGCAAAGATTGATGTTCTTGTGCT
TCCTAAAGAGAGAGCTCAACATCTTCTGGCTAAAAAATTATCTAGGATAA
TAACCATGCTGGCTGAAGTTGGCGCCGATCCAAACCATATTGAAAAAGAT
ATCTATGCGAATCCGGCAATAAGCGCTGGTGAAGCACGTAATCATGGTAT
GCTTCCAAAAAACATTGTCGTAGAATTACAAGCCAAATTAATTTCAGTTG
GAGCAAATCCGTATTATGTTGGCACGTCCTACTTTCCTATGGTCATGGCA
CTTACCGCCATAGAAAACGCAACAAATCCAGCTAAGGCTCGTGCGATAGC
ACTCAAACAGTTTGATTCAAACTTGCTCTATTCTATGGAAACAATTTTCA
CAGAACGTAAGGCAACGCTTTTTGATTTAAATGAACCATCAACTCCTGTT
AAAAAATATAACGTAATGCACCCACTAGGGTTGGCAATTTCATCGGCCAA
TGTTGCAGCAACCAAAATCTTTCTTCAATATTTTGATAAAGAAACAATCA
ATGATTCTGCAACCTTTGTTTGGGGCTACAGGCAAGCCTATACGCCTATG
CATTTGGTGATGGATCCTTGGGCAAAGATTGATGTTCTTGTGCTTCCTAA
AGAGAGAGCTCAACATCTTCTGGCTAAAAAATTATCTAGGATAATAACCA
TGCTGGCTGAAGTTGGCGCCGATCCAAACCATATTGAAAAAGATATCTAT
GCGAATCCGGCAATAAGCGCTGGTGAAGCACGTAATCATGGTATGCTTCC
AAAAAACATTGTCGTAGAATTACAAGCCAAATTAATTTCAGTTGGAGCAA
ATCCGTATTATGTTGGCACGTCCTACTTTCCTATGGTC
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