mRNA_M-pyrifera_M_contig84510.19710.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84510.19710.1
Unique NamemRNA_M-pyrifera_M_contig84510.19710.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig84510.19710.1 vs. uniprot
Match: A0A7S2YVH5_9CHLO (Hypothetical protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2YVH5_9CHLO)

HSP 1 Score: 172 bits (435), Expect = 7.690e-54
Identity = 79/98 (80.61%), Postives = 88/98 (89.80%), Query Frame = 1 
Query:    1 FEVTILDDKGVHRRFRASTYQTGTRVKPFITTMPMKLDDGWNQIQFNLSDFTRRAYSTNYVETLRVQIHANCRIRRIYFADKLYSEHDLPKEYMLFVP 294
            FEV +LDDK V RRFRAS YQ+ TRVKPFI TMPM+LD+GWNQIQFNLSDFTRRAY TNY+ETLRVQIHANCRIRRIYF+D+LYSE +LP EY LF+P
Sbjct:    5 FEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEYKLFLP 102
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BLAST of mRNA_M-pyrifera_M_contig84510.19710.1 vs. uniprot
Match: A0A1N6MC69_9EUKA (Cilia And Flagella Associated Protein 20 (Fragment) n=1 Tax=Sticholonche zanclea TaxID=1054997 RepID=A0A1N6MC69_9EUKA)

HSP 1 Score: 172 bits (436), Expect = 2.400e-53
Identity = 79/98 (80.61%), Postives = 88/98 (89.80%), Query Frame = 1 
Query:    1 FEVTILDDKGVHRRFRASTYQTGTRVKPFITTMPMKLDDGWNQIQFNLSDFTRRAYSTNYVETLRVQIHANCRIRRIYFADKLYSEHDLPKEYMLFVP 294
            FEVT+LDDK V RRFRAS YQ+ TRVKPFI TMPM+LDDGWNQIQFNLSDFTRRAY TNY+ETLRVQIH NCRIRRIYF+D+LYSE +LP E+ LF+P
Sbjct:   58 FEVTVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHGNCRIRRIYFSDRLYSEDELPPEFKLFLP 155
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BLAST of mRNA_M-pyrifera_M_contig84510.19710.1 vs. uniprot
Match: A0A2V0PA96_9CHLO (DUF667 domain-containing protein n=3 Tax=Sphaeropleales TaxID=35491 RepID=A0A2V0PA96_9CHLO)

HSP 1 Score: 173 bits (439), Expect = 2.510e-53
Identity = 79/98 (80.61%), Postives = 90/98 (91.84%), Query Frame = 1 
Query:    1 FEVTILDDKGVHRRFRASTYQTGTRVKPFITTMPMKLDDGWNQIQFNLSDFTRRAYSTNYVETLRVQIHANCRIRRIYFADKLYSEHDLPKEYMLFVP 294
            FEVT+LDDKGV RRFRAS YQ+ TRVKPFI TMPM+LD+GWNQIQFNL+DFTRRAY TNYVETLRVQIHANCRIRR+YF+D+LYSE +LP ++ LFVP
Sbjct:   89 FEVTVLDDKGVKRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLADFTRRAYGTNYVETLRVQIHANCRIRRVYFSDRLYSEEELPPDFKLFVP 186
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BLAST of mRNA_M-pyrifera_M_contig84510.19710.1 vs. uniprot
Match: A0A7R9YEZ7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEZ7_9STRA)

HSP 1 Score: 173 bits (438), Expect = 4.700e-53
Identity = 79/98 (80.61%), Postives = 88/98 (89.80%), Query Frame = 1 
Query:    1 FEVTILDDKGVHRRFRASTYQTGTRVKPFITTMPMKLDDGWNQIQFNLSDFTRRAYSTNYVETLRVQIHANCRIRRIYFADKLYSEHDLPKEYMLFVP 294
            FEV + DDKG+ RRFRAS YQ+ TRVKPFI TMPM+LDDGWNQIQFNLSDFTRRAY TNY+ETLRVQIHANCRIRRIYF+D+LYSE DLP E+ LF+P
Sbjct:   89 FEVQVKDDKGIRRRFRASNYQSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEDLPPEFKLFLP 186
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BLAST of mRNA_M-pyrifera_M_contig84510.19710.1 vs. uniprot
Match: A0A7S2FG31_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2FG31_9DINO)

HSP 1 Score: 171 bits (433), Expect = 5.000e-53
Identity = 78/98 (79.59%), Postives = 89/98 (90.82%), Query Frame = 1 
Query:    1 FEVTILDDKGVHRRFRASTYQTGTRVKPFITTMPMKLDDGWNQIQFNLSDFTRRAYSTNYVETLRVQIHANCRIRRIYFADKLYSEHDLPKEYMLFVP 294
            FEVT+LDDK V RRFRAS YQ+ TRVKPFI TMPM+LD+GWNQIQFNLSDFTRRAY TNY+ETLRVQ+HANCRIRRIYF+D+LYSE +LP E+ LF+P
Sbjct:   25 FEVTVLDDKEVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQLHANCRIRRIYFSDRLYSEEELPPEFKLFLP 122
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BLAST of mRNA_M-pyrifera_M_contig84510.19710.1 vs. uniprot
Match: A0A7J7SAH4_MYOMY (Cilia and flagella associated protein 20 n=2 Tax=Vespertilionidae TaxID=9431 RepID=A0A7J7SAH4_MYOMY)

HSP 1 Score: 170 bits (430), Expect = 5.720e-53
Identity = 77/98 (78.57%), Postives = 88/98 (89.80%), Query Frame = 1 
Query:    1 FEVTILDDKGVHRRFRASTYQTGTRVKPFITTMPMKLDDGWNQIQFNLSDFTRRAYSTNYVETLRVQIHANCRIRRIYFADKLYSEHDLPKEYMLFVP 294
            FEV +LDDK V RRFRAS YQ+ TRVKPFI TMPM+LDDGWNQIQFNLSDFTRRAY TNY+ETLRVQIHANCRIRR+YF+D+LYSE +LP E+ L++P
Sbjct:   12 FEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAEFKLYLP 109
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BLAST of mRNA_M-pyrifera_M_contig84510.19710.1 vs. uniprot
Match: A0A813M0W5_POLGL (Hypothetical protein n=2 Tax=Dinophyceae TaxID=2864 RepID=A0A813M0W5_POLGL)

HSP 1 Score: 171 bits (433), Expect = 6.650e-53
Identity = 78/98 (79.59%), Postives = 89/98 (90.82%), Query Frame = 1 
Query:    1 FEVTILDDKGVHRRFRASTYQTGTRVKPFITTMPMKLDDGWNQIQFNLSDFTRRAYSTNYVETLRVQIHANCRIRRIYFADKLYSEHDLPKEYMLFVP 294
            FEVT+LDDK V RRFRAS YQ+ TRVKPFI TMPM+LD+GWNQIQFNLSDFTRRAY TNY+ETLRVQ+HANCRIRRIYF+D+LYSE +LP E+ LF+P
Sbjct:   40 FEVTVLDDKEVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQLHANCRIRRIYFSDRLYSEEELPPEFKLFLP 137
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BLAST of mRNA_M-pyrifera_M_contig84510.19710.1 vs. uniprot
Match: A0A7S1KZG2_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1KZG2_NEODS)

HSP 1 Score: 172 bits (436), Expect = 6.960e-53
Identity = 77/98 (78.57%), Postives = 90/98 (91.84%), Query Frame = 1 
Query:    1 FEVTILDDKGVHRRFRASTYQTGTRVKPFITTMPMKLDDGWNQIQFNLSDFTRRAYSTNYVETLRVQIHANCRIRRIYFADKLYSEHDLPKEYMLFVP 294
            FEV++LDDKGV RRFRAS YQ+ TRVKPFI TMPM+LD+GWNQIQFNLSDFTRRAY TNY+ETLRVQ+HANCRIRR+YF+D+LYSE +LP E+ LF+P
Sbjct:   89 FEVSVLDDKGVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQVHANCRIRRLYFSDRLYSEEELPPEFKLFLP 186
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BLAST of mRNA_M-pyrifera_M_contig84510.19710.1 vs. uniprot
Match: A0A482SAI6_9ARCH (DUF667 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SAI6_9ARCH)

HSP 1 Score: 170 bits (430), Expect = 7.140e-53
Identity = 78/98 (79.59%), Postives = 88/98 (89.80%), Query Frame = 1 
Query:    1 FEVTILDDKGVHRRFRASTYQTGTRVKPFITTMPMKLDDGWNQIQFNLSDFTRRAYSTNYVETLRVQIHANCRIRRIYFADKLYSEHDLPKEYMLFVP 294
            FEV +LDDK V RRFRAS YQ+ TRVKPFI TMPM+LD+GWNQIQFNLSDFTRRAY TNY+ETLRVQIHANCRIRRIYF+D+LYSE +LP E+ LF+P
Sbjct:    7 FEVMVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEDELPPEFKLFLP 104
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BLAST of mRNA_M-pyrifera_M_contig84510.19710.1 vs. uniprot
Match: A0A7S4JS15_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4JS15_GUITH)

HSP 1 Score: 170 bits (430), Expect = 7.600e-53
Identity = 78/98 (79.59%), Postives = 88/98 (89.80%), Query Frame = 1 
Query:    1 FEVTILDDKGVHRRFRASTYQTGTRVKPFITTMPMKLDDGWNQIQFNLSDFTRRAYSTNYVETLRVQIHANCRIRRIYFADKLYSEHDLPKEYMLFVP 294
            FEV +LDDK V RRFRAS YQ+ TRVKPFI TMPM+LD+GWNQIQFNLSDFTRRAY TNY+ETLRVQIHANCRIRRIYF+D+LYSE +LP E+ LF+P
Sbjct:   24 FEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEDELPPEFKLFLP 121
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84510.19710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2YVH5_9CHLO7.690e-5480.61Hypothetical protein n=1 Tax=Pycnococcus provasoli... [more]
A0A1N6MC69_9EUKA2.400e-5380.61Cilia And Flagella Associated Protein 20 (Fragment... [more]
A0A2V0PA96_9CHLO2.510e-5380.61DUF667 domain-containing protein n=3 Tax=Sphaeropl... [more]
A0A7R9YEZ7_9STRA4.700e-5380.61Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2FG31_9DINO5.000e-5379.59Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A7J7SAH4_MYOMY5.720e-5378.57Cilia and flagella associated protein 20 n=2 Tax=V... [more]
A0A813M0W5_POLGL6.650e-5379.59Hypothetical protein n=2 Tax=Dinophyceae TaxID=286... [more]
A0A7S1KZG2_NEODS6.960e-5378.57Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
A0A482SAI6_9ARCH7.140e-5379.59DUF667 domain-containing protein n=1 Tax=archaeon ... [more]
A0A7S4JS15_GUITH7.600e-5379.59Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84510contigM-pyrifera_M_contig84510:583..876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.6
Seed ortholog evalue9.4e-41
Seed eggNOG ortholog159749.K0SYF2
Preferred nameCFAP20
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000375,GO:0000377,GO:0000398,GO:0001578,GO:0003006,GO:0003352,GO:0003356,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005814,GO:0005815,GO:0005856,GO:0005874,GO:0005875,GO:0005879,GO:0005881,GO:0005929,GO:0005930,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007288,GO:0007291,GO:0007349,GO:0007389,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009653,GO:0009798,GO:0009987,GO:0010467,GO:0014807,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0018094,GO:0018095,GO:0018193,GO:0018200,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030317,GO:0031514,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032838,GO:0032879,GO:0032886,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0035082,GO:0036064,GO:0036126,GO:0036211,GO:0040011,GO:0040012,GO:0040017,GO:0042995,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045184,GO:0045995,GO:0046483,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048520,GO:0048522,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0051179,GO:0051234,GO:0051239,GO:0051270,GO:0051272,GO:0051641,GO:0051674,GO:0051704,GO:0060259,GO:0060271,GO:0060295,GO:0060296,GO:0060632,GO:0065001,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070925,GO:0071704,GO:0071840,GO:0072594,GO:0090304,GO:0097014,GO:0097223,GO:0097540,GO:0097545,GO:0097722,GO:0097729,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901207,GO:1901317,GO:1901360,GO:1901564,GO:1902019,GO:1902093,GO:1905330,GO:1990716,GO:2000026,GO:2000027,GO:2000145,GO:2000147,GO:2000155,GO:2000253,GO:2000826
EggNOG free text desc.Protein of unknown function (DUF667)
EggNOG OGs2XEMX@2836,KOG3213@1,KOG3213@2759
COG Functional cat.K
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816752.7593255-CDS-M-pyrifera_M_contig84510:582..8761622816752.7593255-CDS-M-pyrifera_M_contig84510:582..876Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84510 583..876 -
1692278157.6705651-CDS-M-pyrifera_M_contig84510:582..8761692278157.6705651-CDS-M-pyrifera_M_contig84510:582..876Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84510 583..876 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84510.19710.1prot_M-pyrifera_M_contig84510.19710.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84510 583..876 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84510.19710.1

>prot_M-pyrifera_M_contig84510.19710.1 ID=prot_M-pyrifera_M_contig84510.19710.1|Name=mRNA_M-pyrifera_M_contig84510.19710.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
FEVTILDDKGVHRRFRASTYQTGTRVKPFITTMPMKLDDGWNQIQFNLSD
FTRRAYSTNYVETLRVQIHANCRIRRIYFADKLYSEHDLPKEYMLFVP
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mRNA from alignment at M-pyrifera_M_contig84510:583..876-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84510.19710.1 ID=mRNA_M-pyrifera_M_contig84510.19710.1|Name=mRNA_M-pyrifera_M_contig84510.19710.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig84510:583..876- (Macrocystis pyrifera P11B4 male)
TTCGAGGTGACGATTCTGGACGACAAGGGTGTGCACCGTCGTTTCCGAGC
GAGCACGTACCAGACAGGGACGCGAGTGAAGCCGTTTATCACGACAATGC
CGATGAAGCTGGACGATGGTTGGAATCAAATCCAGTTCAACCTGAGCGAC
TTCACCAGAAGGGCCTACAGCACCAACTATGTCGAAACCTTGCGTGTCCA
GATCCATGCCAATTGCCGCATTCGACGCATTTACTTTGCGGACAAACTTT
ACTCCGAGCACGACTTGCCGAAAGAGTACATGCTCTTTGTGCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84510:583..876-

>mRNA_M-pyrifera_M_contig84510.19710.1 ID=mRNA_M-pyrifera_M_contig84510.19710.1|Name=mRNA_M-pyrifera_M_contig84510.19710.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig84510:583..876- (Macrocystis pyrifera P11B4 male)
TTCGAGGTGACGATTCTGGACGACAAGGGTGTGCACCGTCGTTTCCGAGC
GAGCACGTACCAGACAGGGACGCGAGTGAAGCCGTTTATCACGACAATGC
CGATGAAGCTGGACGATGGTTGGAATCAAATCCAGTTCAACCTGAGCGAC
TTCACCAGAAGGGCCTACAGCACCAACTATGTCGAAACCTTGCGTGTCCA
GATCCATGCCAATTGCCGCATTCGACGCATTTACTTTGCGGACAAACTTT
ACTCCGAGCACGACTTGCCGAAAGAGTACATGCTCTTTGTGCCATTCGAG
GTGACGATTCTGGACGACAAGGGTGTGCACCGTCGTTTCCGAGCGAGCAC
GTACCAGACAGGGACGCGAGTGAAGCCGTTTATCACGACAATGCCGATGA
AGCTGGACGATGGTTGGAATCAAATCCAGTTCAACCTGAGCGACTTCACC
AGAAGGGCCTACAGCACCAACTATGTCGAAACCTTGCGTGTCCAGATCCA
TGCCAATTGCCGCATTCGACGCATTTACTTTGCGGACAAACTTTACTCCG
AGCACGACTTGCCGAAAGAGTACATGCTCTTTGTGCCA
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