mRNA_M-pyrifera_M_contig8451.19709.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8451.19709.1
Unique NamemRNA_M-pyrifera_M_contig8451.19709.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig8451.19709.1 vs. uniprot
Match: D7FMI8_ECTSI (NPC1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMI8_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 9.660e-32
Identity = 63/78 (80.77%), Postives = 68/78 (87.18%), Query Frame = 1
Query:    4 QRTDDLTGRSGRVLQADVVVDGDSACRIYDSCKSVAIVGETTAMQSGLGLLKFQMQTGAVGHGEYFFLSF-ANGSAES 234
            QR DDLTG S RVLQ DV VDGD ACRIY+SCKS+A+VGETTAMQSGLGLLKFQ+QTGAVGHGE+FF SF  N SAES
Sbjct:  194 QRRDDLTGGSSRVLQLDVNVDGDMACRIYESCKSIAVVGETTAMQSGLGLLKFQLQTGAVGHGEFFFPSFETNASAES 271          
BLAST of mRNA_M-pyrifera_M_contig8451.19709.1 vs. uniprot
Match: A0A835YTW9_9STRA (NPC1_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTW9_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 6.560e-20
Identity = 43/68 (63.24%), Postives = 56/68 (82.35%), Query Frame = 1
Query:   13 DDLTGRSGR-VLQADVVVDGDSACRIYDSCKSVAIVGETTAMQSGLGLLKFQMQTGAVGHGEYFFLSF 213
            DDLTG +   VLQADVV+D D AC +++SC + AI G +TAMQS +GLL+FQ+QTGA+GHGEYF+L+F
Sbjct:  165 DDLTGAAQLPVLQADVVLDADYACAVFESCSATAIAGASTAMQSAVGLLQFQLQTGAIGHGEYFYLAF 232          
BLAST of mRNA_M-pyrifera_M_contig8451.19709.1 vs. uniprot
Match: H3H0H3_PHYRM (NPC1_N domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H0H3_PHYRM)

HSP 1 Score: 75.9 bits (185), Expect = 1.360e-14
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 1
Query:    7 RTDDLTGRSG-RVLQADVVVDGDSACRIYDSCKSVAIVGETTAMQSGLGLLKFQMQTGAVGHGEYFFLSFANGSAESVVEDD 249
            R D +TG+   +VL+ DV +D D  C ++DSCK+ A+     AM+S LG L +QMQ GAVGHGEY  L F N S ++  E D
Sbjct:  178 RPDPMTGKEKVKVLELDVALDKDFTCAVFDSCKNTAMASMAAAMKSSLGFLNYQMQVGAVGHGEYISLKF-NASKDASFEHD 258          
BLAST of mRNA_M-pyrifera_M_contig8451.19709.1 vs. uniprot
Match: A0A662XWU5_9STRA (NPC1_N domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XWU5_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 6.070e-14
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    7 RTDDLTGRSG-RVLQADVVVDGDSACRIYDSCKSVAIVGETTAMQSGLGLLKFQMQTGAVGHGEYFFLSFANGSAES 234
            R D +TG+   +VL+ DV +D D  C ++DSCK+ A+     AM+S LG L +QMQ GAVGHGE+  L+F N SA++
Sbjct:   86 RPDPMTGKERVKVLELDVALDKDFTCAVFDSCKNTAMASMAAAMKSSLGFLNYQMQVGAVGHGEFITLAF-NASADA 161          
BLAST of mRNA_M-pyrifera_M_contig8451.19709.1 vs. uniprot
Match: A0A3M6VMR4_9STRA (NPC1_N domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VMR4_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.840e-13
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 1
Query:    7 RTDDLTGRSG-RVLQADVVVDGDSACRIYDSCKSVAIVGETTAMQSGLGLLKFQMQTGAVGHGEYFFLSF 213
            R D +TG+   +VL+ +V +D D  C I+DSCK+ AIV    AM+S LG L +QMQ GAVGHGEY  + F
Sbjct:  180 RPDPMTGKEKVKVLELNVALDKDFTCAIFDSCKNTAIVSMAAAMKSSLGFLNYQMQVGAVGHGEYIAMHF 249          
BLAST of mRNA_M-pyrifera_M_contig8451.19709.1 vs. uniprot
Match: K3X0G1_GLOUD (NPC1_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0G1_GLOUD)

HSP 1 Score: 73.6 bits (179), Expect = 1.950e-13
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    7 RTDDLTGRSG-RVLQADVVVDGDSACRIYDSCKSVAIVGETTAMQSGLGLLKFQMQTGAVGHGEYFFLSFAN 219
            R D +TG    +VL+ DV +D    C +YDSCK+ AI      M+S LG L +QMQTGA+GHGEY  L F +
Sbjct:  185 RLDPMTGEENVKVLEMDVTLDKPFTCALYDSCKNTAIASVAEGMKSSLGFLNYQMQTGAIGHGEYMLLHFTS 256          
BLAST of mRNA_M-pyrifera_M_contig8451.19709.1 vs. uniprot
Match: A0A8K1CL61_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CL61_PYTOL)

HSP 1 Score: 73.2 bits (178), Expect = 2.560e-13
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 1
Query:    7 RTDDLTGRSG-RVLQADVVVDGDSACRIYDSCKSVAIVGETTAMQSGLGLLKFQMQTGAVGHGEYFFLSF 213
            R D +TG+   +VL+ DV +  D  C ++DSCK+ AI   + AM+S LG L +QMQTGA+GHGEY  L F
Sbjct:  182 RPDPMTGKDHVKVLEMDVTLAKDFTCAVFDSCKNTAIASVSEAMKSSLGFLNYQMQTGAIGHGEYMHLHF 251          
BLAST of mRNA_M-pyrifera_M_contig8451.19709.1 vs. uniprot
Match: M4C709_HYAAE (NPC1_N domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C709_HYAAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.110e-12
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 1
Query:    7 RTDDLTGRSG-RVLQADVVVDGDSACRIYDSCKSVAIVGETTAMQSGLGLLKFQMQTGAVGHGEYFFLSF 213
            R D LTG    +VL+  V +D D  C I+DSCK+ A+     AM+S +G L +QMQ GAVGHGEY  L F
Sbjct:   86 RPDPLTGNERVKVLELFVALDKDFTCAIFDSCKNTAMASMAAAMKSSIGFLNYQMQVGAVGHGEYMTLHF 155          
BLAST of mRNA_M-pyrifera_M_contig8451.19709.1 vs. uniprot
Match: A0A5D6YG03_9STRA (NPC1_N domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YG03_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.350e-12
Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    7 RTDDLTGRSG-RVLQADVVVDGDSACRIYDSCKSVAIVGETTAMQSGLGLLKFQMQTGAVGHGEYFFLSFANGS 225
            R D +TG    +VL+  V +D    CR++DSC++ AI   + AM+S LG L +Q+QTGAVGHG++  L FA+G+
Sbjct:  177 RPDPMTGEERVKVLELAVTLDKAFTCRLFDSCRNTAIASMSEAMKSSLGFLNYQVQTGAVGHGQFISLRFADGA 250          
BLAST of mRNA_M-pyrifera_M_contig8451.19709.1 vs. uniprot
Match: W2PHM0_PHYPN (NPC1_N domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2PHM0_PHYPN)

HSP 1 Score: 69.7 bits (169), Expect = 4.480e-12
Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 1
Query:    7 RTDDLTGRSG-RVLQADVVVDGDSACRIYDSCKSVAIVGETTAMQSGLGLLKFQMQTGAVGHGEYFFLSFANGSAESVVEDD 249
            R D +TG+   +VL+ +V +  D  C I+DSCK+ A+     AM+S LG L +QMQ GAVGHGEY  ++F N S +   + D
Sbjct:  178 RPDPMTGKEKVKVLELNVALAKDMTCAIFDSCKNTAMASMAAAMKSSLGFLNYQMQVGAVGHGEYITMAF-NASKDKSFDHD 258          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8451.19709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FMI8_ECTSI9.660e-3280.77NPC1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YTW9_9STRA6.560e-2063.24NPC1_N domain-containing protein n=1 Tax=Tribonema... [more]
H3H0H3_PHYRM1.360e-1447.56NPC1_N domain-containing protein n=1 Tax=Phytophth... [more]
A0A662XWU5_9STRA6.070e-1448.05NPC1_N domain-containing protein n=1 Tax=Nothophyt... [more]
A0A3M6VMR4_9STRA1.840e-1351.43NPC1_N domain-containing protein n=2 Tax=Peronospo... [more]
K3X0G1_GLOUD1.950e-1348.61NPC1_N domain-containing protein n=1 Tax=Globispor... [more]
A0A8K1CL61_PYTOL2.560e-1350.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
M4C709_HYAAE1.110e-1250.00NPC1_N domain-containing protein n=1 Tax=Hyalopero... [more]
A0A5D6YG03_9STRA3.350e-1245.95NPC1_N domain-containing protein n=1 Tax=Pythium b... [more]
W2PHM0_PHYPN4.480e-1243.90NPC1_N domain-containing protein n=10 Tax=Phytopht... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8451contigM-pyrifera_M_contig8451:1150..2176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue3.4e-26
Seed eggNOG ortholog2880.D7FMI8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Niemann-Pick C1 N terminus
EggNOG OGs28I52@1,2QQFF@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size262
Cds size261
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8451.19709.1prot_M-pyrifera_M_contig8451.19709.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8451 1150..2176 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816752.6971743-CDS-M-pyrifera_M_contig8451:1149..12961622816752.6971743-CDS-M-pyrifera_M_contig8451:1149..1296Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8451 1150..1296 +
1692278157.6096013-CDS-M-pyrifera_M_contig8451:1149..12961692278157.6096013-CDS-M-pyrifera_M_contig8451:1149..1296Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8451 1150..1296 +
1622816752.709653-CDS-M-pyrifera_M_contig8451:1713..17801622816752.709653-CDS-M-pyrifera_M_contig8451:1713..1780Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8451 1714..1780 +
1692278157.6263373-CDS-M-pyrifera_M_contig8451:1713..17801692278157.6263373-CDS-M-pyrifera_M_contig8451:1713..1780Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8451 1714..1780 +
1622816752.7199454-CDS-M-pyrifera_M_contig8451:2129..21761622816752.7199454-CDS-M-pyrifera_M_contig8451:2129..2176Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8451 2130..2176 +
1692278157.6447704-CDS-M-pyrifera_M_contig8451:2129..21761692278157.6447704-CDS-M-pyrifera_M_contig8451:2129..2176Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8451 2130..2176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8451.19709.1

>prot_M-pyrifera_M_contig8451.19709.1 ID=prot_M-pyrifera_M_contig8451.19709.1|Name=mRNA_M-pyrifera_M_contig8451.19709.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
MQRTDDLTGRSGRVLQADVVVDGDSACRIYDSCKSVAIVGETTAMQSGLG
LLKFQMQTGAVGHGEYFFLSFANGSAESVVEDDANVQ
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mRNA from alignment at M-pyrifera_M_contig8451:1150..2176+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8451.19709.1 ID=mRNA_M-pyrifera_M_contig8451.19709.1|Name=mRNA_M-pyrifera_M_contig8451.19709.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1027bp|location=Sequence derived from alignment at M-pyrifera_M_contig8451:1150..2176+ (Macrocystis pyrifera P11B4 male)
ATGCAGAGGACGGATGACTTGACAGGAAGGTCGGGTCGAGTGCTTCAGGC GGATGTGGTTGTCGACGGAGATTCGGCTTGCCGGATCTACGACTCGTGCA AAAGCGTCGCCATCGTGGGAGAAACGACAGCCATGCAGTCAGGATTGGTG AGAGCCGTTTCAAGGCGACAGTAGTCATGCCGGATACCTCTTACTTTTTA ACCTGGTGTAGTAATACCTGATGAATACAAAACTCGCCCCCCCTACGTAG CTGCGCTGGGATCTATACCTTGTACCAGTTGTGCTCGTTGCCCTTGGTGT ATTTTTATTCGGTAGTTCACGACAAATAATAGGTTGTGCTATTTGTATTC AGGGCGTGGGCTCCGCTCACTGCACCCGAAGTGCTGCTGTGGAATTGTAT AAGCGCCATCAGTTGGCCTTGAATATCGCCCAAAAACACGTACCTGGTAG TCTACACCGTTGCGTAGTTATGTTTCTTCGATGACAATGTTGCCGCTTCT CTCGAGTTACTCGTTTTGACTCAGTTTGGCTCGTTGTTTGGACTGTTGGA ATGCATGTTGTCAGGGCCTGCTCAAGTTTCAGATGCAAACAGGTGCTGTG GGGCATGGCGAATACTTCTTTCTGTCCTTCGGTGAGTGTCTTCCGGCGGA ACGCGATGACGTGCACCTGCGGCGTAGACTACCCACATGCATGTTTATCA TACATATCGCACAATTCGGTATAGCATAGCACATTCAATAGCATAGCATA GCATAACATAACATGGCATAGCATAGCATATCACATCATAGCATAGCATA GCACAGCGGTGTGTCGGATAGTACTACCTGCATACTTCCGCCTTGCGGCT TCCCGTCGCGTATTATCAGTATTTAACAGTATCATACTGCTGCATAAGAA TATGATGTTCATAAAAACGGAGCGTCGAGAACCAACTCCGCTTTTCGTCG ATTTTATGGCTTTCTCGCTTTTCTTTCTAGCGAACGGGAGCGCGGAATCG GTTGTGGAGGATGATGCCAATGTGCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8451:1150..2176+

>mRNA_M-pyrifera_M_contig8451.19709.1 ID=mRNA_M-pyrifera_M_contig8451.19709.1|Name=mRNA_M-pyrifera_M_contig8451.19709.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig8451:1150..2176+ (Macrocystis pyrifera P11B4 male)
ATGCAGAGGACGGATGACTTGACAGGAAGGTCGGGTCGAGTGCTTCAGGC
GGATGTGGTTGTCGACGGAGATTCGGCTTGCCGGATCTACGACTCGTGCA
AAAGCGTCGCCATCGTGGGAGAAACGACAGCCATGCAGTCAGGATTGATG
CAGAGGACGGATGACTTGACAGGAAGGTCGGGTCGAGTGCTTCAGGCGGA
TGTGGTTGTCGACGGAGATTCGGCTTGCCGGATCTACGACTCGTGCAAAA
GCGTCGCCATCGTGGGAGAAACGACAGCCATGCAGTCAGGATTGGGCCTG
CTCAAGTTTCAGATGCAAACAGGTGCTGTGGGGCATGGCGAATACTTCTT
TCTGTCCTTCGGGCCTGCTCAAGTTTCAGATGCAAACAGGTGCTGTGGGG
CATGGCGAATACTTCTTTCTGTCCTTCGCGAACGGGAGCGCGGAATCGGT
TGTGGAGGATGATGCCAATGTGCAACGAACGGGAGCGCGGAATCGGTTGT
GGAGGATGATGCCAATGTGCAA
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