mRNA_M-pyrifera_M_contig84503.19704.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84503.19704.1
Unique NamemRNA_M-pyrifera_M_contig84503.19704.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84503.19704.1 vs. uniprot
Match: A0A8B8MN29_ABRPR (ubiquitin-conjugating enzyme E2 30-like isoform X1 n=2 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8MN29_ABRPR)

HSP 1 Score: 122 bits (305), Expect = 7.780e-34
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 1
Query:    1 NVNSSGGICLDILKDQWSPALTTSKVLLSISSLLTDPNPDDPLVPEIATVFKTDRAAYMRNAAAWTKKYATG 216
            N+NSSG ICLDILKDQWSPALT SKVLLSI SLLTDPNPDDPLVPEIA ++KTD+A Y   A AWT+KYATG
Sbjct:   84 NINSSGSICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIARMYKTDKAKYEATARAWTQKYATG 155          
BLAST of mRNA_M-pyrifera_M_contig84503.19704.1 vs. uniprot
Match: A0A200RAJ0_9MAGN (Ubiquitin-conjugating enzyme n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200RAJ0_9MAGN)

HSP 1 Score: 120 bits (301), Expect = 2.360e-33
Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = 1
Query:    1 NVNSSGGICLDILKDQWSPALTTSKVLLSISSLLTDPNPDDPLVPEIATVFKTDRAAYMRNAAAWTKKYATG 216
            N+NS+G ICLDILKDQWSPALT SKVLLSI SLLTDPNPDDPLVPEIA ++KTDRA Y   A +WT+KYATG
Sbjct:   74 NINSNGSICLDILKDQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYELTARSWTQKYATG 145          
BLAST of mRNA_M-pyrifera_M_contig84503.19704.1 vs. uniprot
Match: F2UPL4_SALR5 (Ubiquitin-conjugating enzyme H5b n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UPL4_SALR5)

HSP 1 Score: 119 bits (298), Expect = 7.140e-33
Identity = 57/71 (80.28%), Postives = 61/71 (85.92%), Query Frame = 1
Query:    1 NVNSSGGICLDILKDQWSPALTTSKVLLSISSLLTDPNPDDPLVPEIATVFKTDRAAYMRNAAAWTKKYAT 213
            N+NSSGGICLDILK QWSPALT SKVLLSI SLLTDPNPDDPLVPEIA ++KTDRA Y + A  WT KYAT
Sbjct:   77 NINSSGGICLDILKSQWSPALTISKVLLSICSLLTDPNPDDPLVPEIARLYKTDRAKYEKTAREWTTKYAT 147          
BLAST of mRNA_M-pyrifera_M_contig84503.19704.1 vs. uniprot
Match: M4CF60_BRARP (UBC core domain-containing protein n=11 Tax=Brassicaceae TaxID=3700 RepID=M4CF60_BRARP)

HSP 1 Score: 119 bits (298), Expect = 7.350e-33
Identity = 56/72 (77.78%), Postives = 62/72 (86.11%), Query Frame = 1
Query:    1 NVNSSGGICLDILKDQWSPALTTSKVLLSISSLLTDPNPDDPLVPEIATVFKTDRAAYMRNAAAWTKKYATG 216
            NVNS+G ICLDILK+QWSPALT SKVLLSISSLLTDPNPDDPLVPEIA ++KTDR  Y   A +WT+KYA G
Sbjct:   77 NVNSNGSICLDILKEQWSPALTISKVLLSISSLLTDPNPDDPLVPEIANIYKTDRTKYENTARSWTQKYAMG 148          
BLAST of mRNA_M-pyrifera_M_contig84503.19704.1 vs. uniprot
Match: A0A6A2YYA1_HIBSY (Ubiquitin-conjugating enzyme E2 5B n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YYA1_HIBSY)

HSP 1 Score: 118 bits (295), Expect = 1.210e-32
Identity = 56/72 (77.78%), Postives = 61/72 (84.72%), Query Frame = 1
Query:    1 NVNSSGGICLDILKDQWSPALTTSKVLLSISSLLTDPNPDDPLVPEIATVFKTDRAAYMRNAAAWTKKYATG 216
            N+NS+G ICLDILK+QWSPALT SKVLLSISSLL DPNPDDPLVPEIA  +KTDRA Y   A +WT KYATG
Sbjct:   58 NINSNGSICLDILKEQWSPALTVSKVLLSISSLLADPNPDDPLVPEIAHTYKTDRAKYESTARSWTHKYATG 129          
BLAST of mRNA_M-pyrifera_M_contig84503.19704.1 vs. uniprot
Match: A0A426YK82_ENSVE (UBC core domain-containing protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426YK82_ENSVE)

HSP 1 Score: 117 bits (292), Expect = 1.280e-32
Identity = 55/72 (76.39%), Postives = 62/72 (86.11%), Query Frame = 1
Query:    1 NVNSSGGICLDILKDQWSPALTTSKVLLSISSLLTDPNPDDPLVPEIATVFKTDRAAYMRNAAAWTKKYATG 216
            N+NS+G ICLDILK+QWSPALT SKVLLSISSLLTDPNPDDPLVPEIA ++KTDR  Y   A +WT+KYA G
Sbjct:   24 NINSNGSICLDILKEQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHMYKTDRVKYEATARSWTQKYAMG 95          
BLAST of mRNA_M-pyrifera_M_contig84503.19704.1 vs. uniprot
Match: A0A2I0I7C6_PUNGR (UBC core domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0I7C6_PUNGR)

HSP 1 Score: 116 bits (291), Expect = 1.400e-32
Identity = 55/72 (76.39%), Postives = 62/72 (86.11%), Query Frame = 1
Query:    1 NVNSSGGICLDILKDQWSPALTTSKVLLSISSLLTDPNPDDPLVPEIATVFKTDRAAYMRNAAAWTKKYATG 216
            N+NS+G ICLDILK+QWSPALT SKVLLSI SLLTDPNPDDPLVPEIA ++KTDRA Y   A +WT+KYA G
Sbjct:   15 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARSWTQKYAMG 86          
BLAST of mRNA_M-pyrifera_M_contig84503.19704.1 vs. uniprot
Match: A0A484LHM1_9ASTE (UBC core domain-containing protein n=5 Tax=Mesangiospermae TaxID=1437183 RepID=A0A484LHM1_9ASTE)

HSP 1 Score: 118 bits (296), Expect = 1.480e-32
Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = 1
Query:    1 NVNSSGGICLDILKDQWSPALTTSKVLLSISSLLTDPNPDDPLVPEIATVFKTDRAAYMRNAAAWTKKYATG 216
            N+NS+G ICLDILKDQWSPALT SKVLLSI SLLTDPNPDDPLVPEIA ++KTDR+ Y  +A AWT+KYA G
Sbjct:   77 NINSNGSICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETSARAWTQKYAMG 148          
BLAST of mRNA_M-pyrifera_M_contig84503.19704.1 vs. uniprot
Match: A0A7S3J7A6_9SPIT (Hypothetical protein n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3J7A6_9SPIT)

HSP 1 Score: 118 bits (296), Expect = 1.570e-32
Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = 1
Query:    1 NVNSSGGICLDILKDQWSPALTTSKVLLSISSLLTDPNPDDPLVPEIATVFKTDRAAYMRNAAAWTKKYATG 216
            N+NS+G ICLDILKDQWSPALT SKVLLSI SLLTDPNPDDPLVPEIA+++K DRA +  NAA WT+ YATG
Sbjct:   78 NINSNGSICLDILKDQWSPALTISKVLLSIISLLTDPNPDDPLVPEIASLYKEDRATFDANAAEWTRLYATG 149          
BLAST of mRNA_M-pyrifera_M_contig84503.19704.1 vs. uniprot
Match: A0A5J5BLX9_9ASTE (UBC core domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5BLX9_9ASTE)

HSP 1 Score: 116 bits (291), Expect = 1.660e-32
Identity = 55/72 (76.39%), Postives = 62/72 (86.11%), Query Frame = 1
Query:    1 NVNSSGGICLDILKDQWSPALTTSKVLLSISSLLTDPNPDDPLVPEIATVFKTDRAAYMRNAAAWTKKYATG 216
            N+NS+G ICLDILK+QWSPALT SKVLLSI SLLTDPNPDDPLVPEIA ++KTDRA Y   A +WT+KYA G
Sbjct:   21 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 92          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84503.19704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8B8MN29_ABRPR7.780e-3480.56ubiquitin-conjugating enzyme E2 30-like isoform X1... [more]
A0A200RAJ0_9MAGN2.360e-3379.17Ubiquitin-conjugating enzyme n=1 Tax=Macleaya cord... [more]
F2UPL4_SALR57.140e-3380.28Ubiquitin-conjugating enzyme H5b n=1 Tax=Salpingoe... [more]
M4CF60_BRARP7.350e-3377.78UBC core domain-containing protein n=11 Tax=Brassi... [more]
A0A6A2YYA1_HIBSY1.210e-3277.78Ubiquitin-conjugating enzyme E2 5B n=1 Tax=Hibiscu... [more]
A0A426YK82_ENSVE1.280e-3276.39UBC core domain-containing protein n=1 Tax=Ensete ... [more]
A0A2I0I7C6_PUNGR1.400e-3276.39UBC core domain-containing protein n=1 Tax=Punica ... [more]
A0A484LHM1_9ASTE1.480e-3277.78UBC core domain-containing protein n=5 Tax=Mesangi... [more]
A0A7S3J7A6_9SPIT1.570e-3277.78Hypothetical protein n=1 Tax=Euplotes harpa TaxID=... [more]
A0A5J5BLX9_9ASTE1.660e-3276.39UBC core domain-containing protein n=1 Tax=Nyssa s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84503contigM-pyrifera_M_contig84503:4..228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score120.6
Seed ortholog evalue3.2e-25
Seed eggNOG ortholog3711.Bra002842.1-P
KEGG koko:K06689
KEGG Pathwayko04013,ko04120,ko04141,ko04624,map04013,map04120,map04141,map04624
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the ubiquitin-conjugating enzyme family
EggNOG OGs37N8C@33090,3GEHM@35493,3HVJQ@3699,COG5078@1,KOG0417@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816752.5012112-CDS-M-pyrifera_M_contig84503:3..2281622816752.5012112-CDS-M-pyrifera_M_contig84503:3..228Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84503 4..228 +
1692278157.513473-CDS-M-pyrifera_M_contig84503:3..2281692278157.513473-CDS-M-pyrifera_M_contig84503:3..228Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84503 4..228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84503.19704.1prot_M-pyrifera_M_contig84503.19704.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84503 4..228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84503.19704.1

>prot_M-pyrifera_M_contig84503.19704.1 ID=prot_M-pyrifera_M_contig84503.19704.1|Name=mRNA_M-pyrifera_M_contig84503.19704.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
NVNSSGGICLDILKDQWSPALTTSKVLLSISSLLTDPNPDDPLVPEIATV
FKTDRAAYMRNAAAWTKKYATGFD*
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mRNA from alignment at M-pyrifera_M_contig84503:4..228+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84503.19704.1 ID=mRNA_M-pyrifera_M_contig84503.19704.1|Name=mRNA_M-pyrifera_M_contig84503.19704.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=225bp|location=Sequence derived from alignment at M-pyrifera_M_contig84503:4..228+ (Macrocystis pyrifera P11B4 male)
AACGTCAACTCGTCCGGAGGCATTTGCCTTGACATTCTCAAGGACCAATG GTCTCCAGCACTCACCACCTCCAAGGTGCTTCTTTCGATTTCCAGTCTTC TCACAGACCCAAACCCAGATGATCCTTTGGTCCCAGAAATCGCAACAGTC TTCAAGACCGATCGTGCTGCCTACATGAGGAATGCAGCCGCTTGGACCAA GAAGTATGCCACTGGCTTTGACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84503:4..228+

>mRNA_M-pyrifera_M_contig84503.19704.1 ID=mRNA_M-pyrifera_M_contig84503.19704.1|Name=mRNA_M-pyrifera_M_contig84503.19704.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig84503:4..228+ (Macrocystis pyrifera P11B4 male)
AACGTCAACTCGTCCGGAGGCATTTGCCTTGACATTCTCAAGGACCAATG
GTCTCCAGCACTCACCACCTCCAAGGTGCTTCTTTCGATTTCCAGTCTTC
TCACAGACCCAAACCCAGATGATCCTTTGGTCCCAGAAATCGCAACAGTC
TTCAAGACCGATCGTGCTGCCTACATGAGGAATGCAGCCGCTTGGACCAA
GAAGTATGCCACTGGCTTTGACTGAAACGTCAACTCGTCCGGAGGCATTT
GCCTTGACATTCTCAAGGACCAATGGTCTCCAGCACTCACCACCTCCAAG
GTGCTTCTTTCGATTTCCAGTCTTCTCACAGACCCAAACCCAGATGATCC
TTTGGTCCCAGAAATCGCAACAGTCTTCAAGACCGATCGTGCTGCCTACA
TGAGGAATGCAGCCGCTTGGACCAAGAAGTATGCCACTGGCTTTGACTGA
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