mRNA_M-pyrifera_M_contig84492.19699.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84492.19699.1
Unique NamemRNA_M-pyrifera_M_contig84492.19699.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84492.19699.1 vs. uniprot
Match: A9VCQ3_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VCQ3_MONBE)

HSP 1 Score: 165 bits (417), Expect = 7.660e-44
Identity = 80/178 (44.94%), Postives = 111/178 (62.36%), Query Frame = 1
Query:    7 HPTGELCGSVFWTLLNHRLHRTFPRNVTYVDEIETSLLNVAFANQGRGDVQGIRYFANLHYAKQIPTNHGTCCEGSGTRIFGLAPSFIYSLGPKALYIDLFFASSLHTTLPDTSSSLSLTLQSNFPYSPNVSISIFSASQTSFDLHIRIPTWASSPMDIQVDHKKVGTGNPGTYFTLS 540
            HPTGELCGS+FW  LN R HR  P N T+V E+E  + NV  ANQ    + GIRYFA LH  KQ+PT  GTCCEG GTR+ G  P +++S    A++++L+ A+S H  LP T+  + + + + FPY    +I+I +A     D+ +RIP+W S  +D++VD      G PGT+  LS
Sbjct:  437 HPTGELCGSMFWLKLNQRFHRLDPLNETFVTEMEREIFNVGVANQEPNGL-GIRYFALLHKNKQVPTTTGTCCEGQGTRMLGSLPEYVFSYNGTAVFVNLYTAASAH--LPQTAGDVDIVIDTVFPYDSAANITIAAAGSGQLDVFVRIPSWQSGTVDVRVDGAVAAHGTPGTFVHLS 611          
BLAST of mRNA_M-pyrifera_M_contig84492.19699.1 vs. uniprot
Match: A0A356M3R3_9FIRM (Uncharacterized protein n=1 Tax=Clostridiales bacterium TaxID=1898207 RepID=A0A356M3R3_9FIRM)

HSP 1 Score: 143 bits (361), Expect = 1.000e-36
Identity = 81/173 (46.82%), Postives = 106/173 (61.27%), Query Frame = 1
Query:   10 PTGELCGSVFWTLLNHRLHRTFPRNVTYVDEIETSLLNVAFANQGRGDVQGIRYFANLHYAKQIPTNHGTCCEGSGTRIFGLAPSFIYSLGPKALYIDLFFASSLHTTLPDTSSSLSLTLQSNFPYSPNVSISIFSASQTSFDLHIRIPTWASSPMDIQVDHKKVGTGNPGTY 528
            P  ELC S FW LLN RLHR FP   +YV E+E SL N+A ANQ  G+  GIRYFA +   KQ P     CC G GTR+FGL P FIYS+GP  LY+DL+ AS      P+    +S+ + + FP++  +++ I  A    F+L +RIP WA+ P+ I  D  K+ TG PG+Y
Sbjct:  305 PYNELCCSSFWILLNQRLHRLFPDRESYVAEMEASLYNIAIANQD-GET-GIRYFAWIDQHKQ-PGGKVHCCCGVGTRLFGLLPEFIYSIGPDTLYVDLYAASRFEWERPE--GVVSVNMDTAFPFADEITLEIDCAQAQDFELKLRIPGWAAGPVVIS-DGDKILTGQPGSY 471          
BLAST of mRNA_M-pyrifera_M_contig84492.19699.1 vs. uniprot
Match: A0A5J4RIC0_9ZZZZ (Non-reducing end beta-L-arabinofuranosidase n=1 Tax=termite gut metagenome TaxID=433724 RepID=A0A5J4RIC0_9ZZZZ)

HSP 1 Score: 143 bits (361), Expect = 2.060e-36
Identity = 80/180 (44.44%), Postives = 99/180 (55.00%), Query Frame = 1
Query:    1 LQHPTGELCGSVFWTLLNHRLHRTFPRNVTYVDEIETSLLNVAFANQGRGDVQGIRYFANLHYAKQIPTNHGTCCEGSGTRIFGLAPSFIYSLGPKALYIDLFFASSLHTTLPDTSSSLSLTLQSNFPYSPNVSISIFSASQTSFDLHIRIPTWASSPMDIQVDHKKVGTGNPGTYFTLS 540
            L   TGELCGS FWT LN +    +P    YV+EIE S+ NV  ANQ   D   IRY A L   K    +  TCCEG GTR+ G  P FIY +    LY+DL+  SS+         SLSL + SNFP  P V + I         + IR+P+WASS MDI V+ KK  +G PG+Y  L+
Sbjct:  505 LHAGTGELCGSSFWTFLNQQFRVIYPDEEKYVNEIEKSIYNVGIANQK--DDGKIRYHARLINKKDAAGDGNTCCEGQGTRLLGALPEFIYKIAADGLYVDLYNESSI--IWEQDGQSLSLHMHSNFPDKPEVKLHIALKKNMQSKIRIRVPSWASSAMDIWVNGKKAASGTPGSYVMLN 680          
BLAST of mRNA_M-pyrifera_M_contig84492.19699.1 vs. uniprot
Match: A0A7C5UXF4_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7C5UXF4_9BACT)

HSP 1 Score: 139 bits (350), Expect = 6.590e-35
Identity = 74/173 (42.77%), Postives = 96/173 (55.49%), Query Frame = 1
Query:   19 ELCGSVFWTLLNHRLHRTFPRNVTYVDEIETSLLNVAFANQGRGDVQGIRYFANLHYAKQIPTNHGTCCEGSGTRIFGLAPSFIYSLGPKALYIDLFFASSLHTTLPDTSSSLSLTLQSNFPYSPNVSISIFSASQTSFDLHIRIPTWASSPMDIQVDHKKVGTGNPGTYFTL 537
            ELCG+ FW  LN RLH   P    YV EIE S+ NVA ANQ   D  G RY A L   K+ PT   TCCEG GTR+ G  P  I+S+    +Y++LF  S+L     +    LSL + +NFP+ PNV I   +       + +R+P+WAS  M IQV+ +    G PG+Y  L
Sbjct:  535 ELCGNAFWAFLNQRLHELDPDEEKYVTEIEKSIYNVALANQAGPD--GFRYHALLTGRKEQPTEINTCCEGQGTRLIGSLPEHIFSIANDGVYVNLFEPSTLKWKQAEQD--LSLRMTTNFPFDPNVRIEFAARRPVRAKIRVRVPSWASQEMTIQVNGRHAAAGRPGSYIVL 703          
BLAST of mRNA_M-pyrifera_M_contig84492.19699.1 vs. uniprot
Match: A0A7S4LEW1_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LEW1_9EUGL)

HSP 1 Score: 124 bits (310), Expect = 1.290e-30
Identity = 78/182 (42.86%), Postives = 103/182 (56.59%), Query Frame = 1
Query:   16 GELCGSVFWTLLNHRLHRTFPRNVTYVDEIETSLLNVAFANQGRGDVQGIRYFANLHYAKQIPTNHGTCCEGSGTRIFGLAPSFIYSLGPKA-------LYIDLFFASSL-HTTLPDTSSSLSLTLQSNFPYSPNVSI--SIFSASQTSFDLHIRIPTWASSP-MDIQVDHKKVGTGNPGTY 528
            GELCGS+FW LLN R H   P N  YV E+E SL NV FANQ   D   IRYFA LH  KQ     GTCCEG GTR++G+ P FIYS  P         +Y+DLF AS+    T  D    + LT ++ FPY   V++  S+  A   +F L++R P W  +P +D+ +++ +      G+Y
Sbjct:    1 GELCGSMFWLLLNQRFHFLDPDNEAYVAEMERSLYNVGFANQVP-DGPRIRYFARLHGYKQPGYAIGTCCEGQGTRMYGMLPEFIYSSAPPTAAGTVLGVYVDLFAASTFGFNTSGDAQ--VVLTQRTRFPYDGKVTLTMSVSRAPTAAFALYVRSPGWLDAPCLDVALNNVRAQCIVRGSY 179          
BLAST of mRNA_M-pyrifera_M_contig84492.19699.1 vs. uniprot
Match: UPI001BA65364 (glycoside hydrolase family 127 protein n=1 Tax=Carboxylicivirga linearis TaxID=1628157 RepID=UPI001BA65364)

HSP 1 Score: 77.0 bits (188), Expect = 3.460e-13
Identity = 55/177 (31.07%), Postives = 85/177 (48.02%), Query Frame = 1
Query:   19 ELCGSVFWTLLNHRLHRTFPRNVTYVDEIETSLLNVAFANQGRGDV-QGI-RYFANLHYAKQIPTNHGT-CCEGSGTRIFGLAPSFIYSLGPKALYIDLFFASSLHTTLPDTSSSLSLTLQSNFPYSPNVSISIFSASQTSFDLHIRIPTWASSPMDIQVDHKKVGTGNPGTYFTLS 540
            E C ++ W  L   L      +V Y D IE  ++N  FA Q   D+ +G+ RY    +  K     HG  CC  SG RI  L P+F Y+    A +I+ +  S            L  T+++ +P S N+ ++I +      DL +RIP+W   P+ ++V  K++    PG+Y TLS
Sbjct:  365 ETCATMSWMQLTQMLLE-ITGDVKYADAIERLMINHVFAAQ---DIDEGLCRYHTAPNGTKPAGFFHGPDCCTASGHRIISLIPTFAYAENGSAFFINQYLESEYE------GKDLQFTIETKYPESENIKLTITTEKPVKKDLLLRIPSWCKHPI-VKVKGKEINDIKPGSYLTLS 530          
BLAST of mRNA_M-pyrifera_M_contig84492.19699.1 vs. uniprot
Match: A0A5N8XZ89_9ACTN (Glycosylase n=2 Tax=Streptomyces spongiae TaxID=565072 RepID=A0A5N8XZ89_9ACTN)

HSP 1 Score: 69.7 bits (169), Expect = 1.230e-10
Identity = 52/159 (32.70%), Postives = 80/159 (50.31%), Query Frame = 1
Query:   91 YVDEIETSLLN-VAFANQGRGDVQG--IRYFANL---HYAKQIPTNHGTCCEGSGTRIFGLAPSFIY--SLGPKALYIDLFFASSLHTTLPDTSSSLSLTLQSNFPYSPNVSISIFSASQTSFDLHIRIPTWASSPMDIQVDHKKV-GTGNPGTYFTLS 540
            Y+D  E +L N V  + Q + D +   + YF  L   H     P    TCCEG+G          +Y       ALY++L+  S    TL  ++  +++T  + +P     +I++ S    SFDL +R+P+WA+S   + V+   V GT NPG+YFTLS
Sbjct:  582 YMDYYERALYNQVLGSKQDKADAEKPLVTYFIGLKPGHVRDYTPKQGTTCCEGTGMESATKYQDSVYFRKADDSALYVNLYSPS----TLAWSAKGVTVTQTTEYPREQGSTITV-SGGSASFDLKLRVPSWATSGFRVTVNGSTVSGTPNPGSYFTLS 735          
BLAST of mRNA_M-pyrifera_M_contig84492.19699.1 vs. uniprot
Match: A0A124ED61_9ACTN (Glycosylase n=1 Tax=Streptomyces kanasensis TaxID=936756 RepID=A0A124ED61_9ACTN)

HSP 1 Score: 69.3 bits (168), Expect = 1.690e-10
Identity = 54/169 (31.95%), Postives = 83/169 (49.11%), Query Frame = 1
Query:   61 LHRTFPRNVTYVDEIETSLLN-VAFANQGRGDVQG--IRYFANL---HYAKQIPTNHGTCCEGSGTRIFGLAPSFIYSLGPK--ALYIDLFFASSLHTTLPDTSSSLSLTLQSNFPYSPNVSISIFSASQTSFDLHIRIPTWASSPMDIQVDHKKV-GTGNPGTYFTLS 540
            LH   P    Y+D  E +LLN V  + Q R D +   + YF  L   H     P    TCCEG+G          +Y   P   AL+++L+ A    TTL    + +++T  +++P     +I++      +FDL +R+PTWA S   + V+ +   GT  PG+YFT+S
Sbjct:  616 LHEQDP---AYMDYYERALLNQVLGSKQDRPDAEKPLVTYFVGLRPGHVRDYTPKAGTTCCEGTGMESHTKYQDSVYFARPDGGALHVNLYSA----TTLTWAENGVTVTQTTDYPREQGSTITVRGRRPATFDLLLRVPTWARSGFRVTVNGRAAQGTPVPGSYFTVS 777          
BLAST of mRNA_M-pyrifera_M_contig84492.19699.1 vs. uniprot
Match: A0A7X7IIV8_9BACT (Glycoside hydrolase family 127 protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7X7IIV8_9BACT)

HSP 1 Score: 66.2 bits (160), Expect = 1.820e-9
Identity = 50/181 (27.62%), Postives = 92/181 (50.83%), Query Frame = 1
Query:   19 ELCGSVFWTLLNHR-LHRTFPRNVTYVDEIETSLLN-----VAFANQGRGDVQGIRYFANLHYAKQIPTNHGTCCEGSGTRIFGLAPSFIYSLGPKALYIDLFFASSLHTTLPDTSSSLSLTLQSNFPYSPNVSISIFSASQTSFDLHIRIPTWASSPMDIQVDHKKVG-TGNPGTYFTLS 540
            E C ++   + N+R LH T   +  + D +E SL N     ++   Q    V  +  F +    K   T   TCC  +  R+  + P + YS   + +++ L+   +   TL +    L+LT Q+ +PY   + ++I +    +F+L++RIP+WA S  DI+++ + VG +  PG YF+++
Sbjct:  315 ETCAAIANVMWNYRNLHIT--ADARFADWLERSLYNGVISGISLDYQHYFYVNPLASFGDHQRQKWFDT---TCCPSNLQRLLAMLPGYFYSTDNEGVWVHLYDTGTAGITLKN-GDQLTLTQQTKYPYDGLIVMTINTDKPETFNLNLRIPSWADS-CDIKINGQAVGNSATPGQYFSIN 488          
BLAST of mRNA_M-pyrifera_M_contig84492.19699.1 vs. uniprot
Match: A0A0B8XMC5_9SPHI (Non-reducing end beta-L-arabinofuranosidase n=7 Tax=Pedobacter TaxID=84567 RepID=A0A0B8XMC5_9SPHI)

HSP 1 Score: 64.3 bits (155), Expect = 8.510e-9
Identity = 50/188 (26.60%), Postives = 88/188 (46.81%), Query Frame = 1
Query:   16 GELCGSVFWTLLNHRLHRTFPRNVTYVDEIETSLLNVAFANQGRGDVQGIRYFANLHYAKQIPTNH------------GTCCEGSGTRIFGLAPSFIYSLGPKALYIDLFFASSLHTTLPDTSSSLSLTLQSNFPYSPNVSISIFSASQTSFDLHIRIPTWASSPMDIQVDHKKVGT-GNPGTYFTLS 540
             E C ++   L N+R+ +       Y D IE +L N   +     D +   Y   L Y+  +P                 CC  +  R      ++ YS+  K ++I+L+ A+ L TTL D  SSL ++ ++ +P++ ++ +++  +S+  F   +RIP WAS    I V+ K + T   PGTY  ++
Sbjct:  358 NETCANIGNVLWNYRMLQ-LSGEAKYADVIELALYNSVLSGISL-DGKRFLYTNPLSYSDALPFKQRWSKDRIEYISLSNCCPPNTVRTLAEVSNYAYSVSDKGVWINLYGANELKTTLKD-GSSLLVSQETAYPWNGDIKLTVKESSKNPFSFFLRIPGWASKA-SILVNGKALETPAKPGTYAEIN 541          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84492.19699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A9VCQ3_MONBE7.660e-4444.94Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A356M3R3_9FIRM1.000e-3646.82Uncharacterized protein n=1 Tax=Clostridiales bact... [more]
A0A5J4RIC0_9ZZZZ2.060e-3644.44Non-reducing end beta-L-arabinofuranosidase n=1 Ta... [more]
A0A7C5UXF4_9BACT6.590e-3542.77Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A7S4LEW1_9EUGL1.290e-3042.86Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
UPI001BA653643.460e-1331.07glycoside hydrolase family 127 protein n=1 Tax=Car... [more]
A0A5N8XZ89_9ACTN1.230e-1032.70Glycosylase n=2 Tax=Streptomyces spongiae TaxID=56... [more]
A0A124ED61_9ACTN1.690e-1031.95Glycosylase n=1 Tax=Streptomyces kanasensis TaxID=... [more]
A0A7X7IIV8_9BACT1.820e-927.62Glycoside hydrolase family 127 protein n=1 Tax=Phy... [more]
A0A0B8XMC5_9SPHI8.510e-926.60Non-reducing end beta-L-arabinofuranosidase n=7 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84492contigM-pyrifera_M_contig84492:316..855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score168.7
Seed ortholog evalue2.5e-39
Seed eggNOG ortholog81824.XP_001750473.1
Preferred nameNUP145
KEGG koko:K14297,ko:K18720
KEGG TC1.I.1
KEGG Pathwayko03013,ko05164,map03013,map05164
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000054,GO:0000055,GO:0000070,GO:0000278,GO:0000280,GO:0000578,GO:0000775,GO:0000776,GO:0000819,GO:0000972,GO:0000973,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005048,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006323,GO:0006325,GO:0006342,GO:0006344,GO:0006348,GO:0006355,GO:0006403,GO:0006405,GO:0006406,GO:0006407,GO:0006409,GO:0006508,GO:0006606,GO:0006607,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0006996,GO:0006997,GO:0006999,GO:0007028,GO:0007049,GO:0007059,GO:0007076,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007315,GO:0007346,GO:0007350,GO:0007351,GO:0007389,GO:0008104,GO:0008139,GO:0008150,GO:0008152,GO:0008233,GO:0008358,GO:0008595,GO:0009266,GO:0009408,GO:0009628,GO:0009790,GO:0009792,GO:0009798,GO:0009880,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009948,GO:0009952,GO:0009987,GO:0009994,GO:0010389,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016043,GO:0016458,GO:0016787,GO:0016973,GO:0017038,GO:0017056,GO:0019219,GO:0019222,GO:0019538,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0030154,GO:0030261,GO:0030719,GO:0031080,GO:0031081,GO:0031090,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031990,GO:0032386,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0033554,GO:0033750,GO:0034397,GO:0034398,GO:0034399,GO:0034501,GO:0034502,GO:0034504,GO:0034605,GO:0034613,GO:0034629,GO:0034641,GO:0035282,GO:0035392,GO:0035770,GO:0036228,GO:0036464,GO:0040029,GO:0042254,GO:0042277,GO:0042886,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044613,GO:0044614,GO:0044703,GO:0045184,GO:0045495,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0046822,GO:0046907,GO:0048285,GO:0048468,GO:0048469,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050000,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051029,GO:0051031,GO:0051049,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051664,GO:0051668,GO:0051704,GO:0051716,GO:0051726,GO:0060255,GO:0060293,GO:0060341,GO:0065007,GO:0070013,GO:0070727,GO:0071103,GO:0071166,GO:0071426,GO:0071427,GO:0071428,GO:0071431,GO:0071459,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072657,GO:0080090,GO:0090304,GO:0090435,GO:0097064,GO:0097159,GO:0098687,GO:0098813,GO:0140014,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901987,GO:1901990,GO:1902679,GO:1902680,GO:1902749,GO:1903047,GO:1903506,GO:1903507,GO:1903508,GO:1990893,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
EggNOG OGs38I30@33154,COG1874@1,KOG0496@2759,KOG0845@1,KOG0845@2759
COG Functional cat.UY
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Exons1
Model size540
Cds size540
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816752.317343-CDS-M-pyrifera_M_contig84492:315..8551622816752.317343-CDS-M-pyrifera_M_contig84492:315..855Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84492 316..855 +
1692278157.4180489-CDS-M-pyrifera_M_contig84492:315..8551692278157.4180489-CDS-M-pyrifera_M_contig84492:315..855Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84492 316..855 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84492.19699.1prot_M-pyrifera_M_contig84492.19699.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84492 316..855 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84492.19699.1

>prot_M-pyrifera_M_contig84492.19699.1 ID=prot_M-pyrifera_M_contig84492.19699.1|Name=mRNA_M-pyrifera_M_contig84492.19699.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=180bp
LQHPTGELCGSVFWTLLNHRLHRTFPRNVTYVDEIETSLLNVAFANQGRG
DVQGIRYFANLHYAKQIPTNHGTCCEGSGTRIFGLAPSFIYSLGPKALYI
DLFFASSLHTTLPDTSSSLSLTLQSNFPYSPNVSISIFSASQTSFDLHIR
IPTWASSPMDIQVDHKKVGTGNPGTYFTLS
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mRNA from alignment at M-pyrifera_M_contig84492:316..855+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84492.19699.1 ID=mRNA_M-pyrifera_M_contig84492.19699.1|Name=mRNA_M-pyrifera_M_contig84492.19699.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig84492:316..855+ (Macrocystis pyrifera P11B4 male)
TTGCAACATCCTACTGGGGAGTTGTGTGGCAGTGTGTTTTGGACATTGCT CAACCACAGGCTGCATCGCACTTTCCCAAGGAACGTGACGTATGTGGATG AGATCGAAACTTCTCTTCTCAACGTTGCATTCGCGAATCAAGGGCGTGGA GATGTGCAAGGGATTCGGTATTTCGCCAACTTGCACTATGCCAAGCAAAT TCCAACCAACCACGGCACTTGTTGTGAAGGCTCAGGCACACGAATTTTTG GCCTCGCTCCTTCCTTCATCTACTCCCTGGGACCAAAAGCTCTCTACATC GACCTCTTCTTCGCCTCCTCCCTCCACACCACTCTCCCAGACACATCCTC CTCACTCTCCCTCACCCTCCAATCCAACTTCCCATACTCCCCAAACGTCT CCATCTCCATCTTCTCCGCCTCCCAAACCTCCTTCGACCTCCACATTCGC ATCCCAACGTGGGCCTCCTCCCCCATGGATATCCAAGTGGACCACAAAAA AGTTGGAACTGGCAATCCAGGCACCTACTTCACCCTCTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84492:316..855+

>mRNA_M-pyrifera_M_contig84492.19699.1 ID=mRNA_M-pyrifera_M_contig84492.19699.1|Name=mRNA_M-pyrifera_M_contig84492.19699.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1080bp|location=Sequence derived from alignment at M-pyrifera_M_contig84492:316..855+ (Macrocystis pyrifera P11B4 male)
TTGCAACATCCTACTGGGGAGTTGTGTGGCAGTGTGTTTTGGACATTGCT
CAACCACAGGCTGCATCGCACTTTCCCAAGGAACGTGACGTATGTGGATG
AGATCGAAACTTCTCTTCTCAACGTTGCATTCGCGAATCAAGGGCGTGGA
GATGTGCAAGGGATTCGGTATTTCGCCAACTTGCACTATGCCAAGCAAAT
TCCAACCAACCACGGCACTTGTTGTGAAGGCTCAGGCACACGAATTTTTG
GCCTCGCTCCTTCCTTCATCTACTCCCTGGGACCAAAAGCTCTCTACATC
GACCTCTTCTTCGCCTCCTCCCTCCACACCACTCTCCCAGACACATCCTC
CTCACTCTCCCTCACCCTCCAATCCAACTTCCCATACTCCCCAAACGTCT
CCATCTCCATCTTCTCCGCCTCCCAAACCTCCTTCGACCTCCACATTCGC
ATCCCAACGTGGGCCTCCTCCCCCATGGATATCCAAGTGGACCACAAAAA
AGTTGGAACTGGCAATCCAGGCACCTACTTCACCCTCTCCTTGCAACATC
CTACTGGGGAGTTGTGTGGCAGTGTGTTTTGGACATTGCTCAACCACAGG
CTGCATCGCACTTTCCCAAGGAACGTGACGTATGTGGATGAGATCGAAAC
TTCTCTTCTCAACGTTGCATTCGCGAATCAAGGGCGTGGAGATGTGCAAG
GGATTCGGTATTTCGCCAACTTGCACTATGCCAAGCAAATTCCAACCAAC
CACGGCACTTGTTGTGAAGGCTCAGGCACACGAATTTTTGGCCTCGCTCC
TTCCTTCATCTACTCCCTGGGACCAAAAGCTCTCTACATCGACCTCTTCT
TCGCCTCCTCCCTCCACACCACTCTCCCAGACACATCCTCCTCACTCTCC
CTCACCCTCCAATCCAACTTCCCATACTCCCCAAACGTCTCCATCTCCAT
CTTCTCCGCCTCCCAAACCTCCTTCGACCTCCACATTCGCATCCCAACGT
GGGCCTCCTCCCCCATGGATATCCAAGTGGACCACAAAAAAGTTGGAACT
GGCAATCCAGGCACCTACTTCACCCTCTCC
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