mRNA_M-pyrifera_M_contig84467.19693.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84467.19693.1
Unique NamemRNA_M-pyrifera_M_contig84467.19693.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig84467.19693.1 vs. uniprot
Match: A0A6H5LFY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LFY0_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.200e-19
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    4 WEAGEQMFISYGPRSNDHLLQRYGFVEPSNPNDVYRITGLLDKV 135
            W AGEQ+FISYGPRSNDHLLQRYGFVE  NPNDVYRITGL+DK+
Sbjct:  366 WTAGEQVFISYGPRSNDHLLQRYGFVEQDNPNDVYRITGLIDKL 409
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BLAST of mRNA_M-pyrifera_M_contig84467.19693.1 vs. uniprot
Match: D7G028_ECTSI (Rubis-subs-bind domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G028_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 7.240e-19
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    4 WEAGEQMFISYGPRSNDHLLQRYGFVEPSNPNDVYRITGLLDKV 135
            W AGEQ+ ISYGPRSNDHLL+RYGFVE  NPNDVYRITGL+DK+
Sbjct:   46 WTAGEQVLISYGPRSNDHLLRRYGFVEQDNPNDVYRITGLIDKL 89
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BLAST of mRNA_M-pyrifera_M_contig84467.19693.1 vs. uniprot
Match: A0A7S2E8C9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E8C9_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.580e-10
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:   19 QMFISYGPRSNDHLLQRYGFVEPSNPNDVY 108
            Q+FISYGPRSND LLQ YGFVEP+NPND+Y
Sbjct:  101 QLFISYGPRSNDQLLQYYGFVEPNNPNDIY 130
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BLAST of mRNA_M-pyrifera_M_contig84467.19693.1 vs. uniprot
Match: A0A7S3AC26_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3AC26_9RHOD)

HSP 1 Score: 60.1 bits (144), Expect = 8.030e-10
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    4 WEAGEQMFISYGPRSNDHLLQRYGFVEPSNPNDVYRITGLLDKV 135
            ++ GEQ+FISYG RSND LLQ YGFVE +NP+DVY +   L  V
Sbjct:   50 YKKGEQVFISYGDRSNDQLLQYYGFVEENNPHDVYVVGETLQSV 93
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BLAST of mRNA_M-pyrifera_M_contig84467.19693.1 vs. uniprot
Match: A0A8J4FZN4_9CHLO (SET domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FZN4_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 1.740e-9
Identity = 25/41 (60.98%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    4 WEAGEQMFISYGPRSNDHLLQRYGFVEPSNPNDVYRITGLL 126
            ++ GEQ+FISYGP+SND L+Q YGF E +NP+DVY +T +L
Sbjct:  336 FKKGEQVFISYGPQSNDSLMQYYGFAEANNPHDVYVMTDML 376
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BLAST of mRNA_M-pyrifera_M_contig84467.19693.1 vs. uniprot
Match: A0A7S3EP57_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EP57_9RHOD)

HSP 1 Score: 60.1 bits (144), Expect = 2.380e-9
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    4 WEAGEQMFISYGPRSNDHLLQRYGFVEPSNPNDVYRITGLLDKV 135
            ++ GEQ+FISYG RSND LLQ YGFVE +NP+DVY +   L  V
Sbjct:  305 YKKGEQVFISYGDRSNDQLLQYYGFVEENNPHDVYVVGETLQSV 348
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BLAST of mRNA_M-pyrifera_M_contig84467.19693.1 vs. uniprot
Match: A0A8J4F2B9_9CHLO (SET domain-containing protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4F2B9_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 3.260e-9
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   13 GEQMFISYGPRSNDHLLQRYGFVEPSNPNDVYRITGLL 126
            GEQ+FISYGP+SND L+Q YGF E +NP DVY +T +L
Sbjct:  336 GEQVFISYGPQSNDSLMQYYGFAEANNPQDVYVMTDML 373
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BLAST of mRNA_M-pyrifera_M_contig84467.19693.1 vs. uniprot
Match: A0A7S3FBI2_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FBI2_9VIRI)

HSP 1 Score: 57.0 bits (136), Expect = 4.290e-9
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    7 EAGEQMFISYGPRSNDHLLQRYGFVEPSNPNDVYRITGLLDKV 135
            E GE++FISYGP SND LL RYG+VE  N  DV+    LLD V
Sbjct:   35 EVGEEVFISYGPLSNDALLLRYGYVESGNACDVFEFESLLDAV 77
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BLAST of mRNA_M-pyrifera_M_contig84467.19693.1 vs. uniprot
Match: A0A7S1MVV5_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1MVV5_HEMAN)

HSP 1 Score: 59.3 bits (142), Expect = 4.430e-9
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 AWEAGEQMFISYGPRSNDHLLQRYGFVEPSNPNDVYRITGL 123
            A+   +Q++ISYG RSND LLQ YGFVE  NPNDVY+IT +
Sbjct:  338 AYGRDKQVYISYGSRSNDQLLQYYGFVEKDNPNDVYQITDI 378
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BLAST of mRNA_M-pyrifera_M_contig84467.19693.1 vs. uniprot
Match: B7G3N0_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G3N0_PHATC)

HSP 1 Score: 59.3 bits (142), Expect = 4.460e-9
Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:   10 AGEQMFISYGPRSNDHLLQRYGFVEPSNPNDVY 108
            +G++++ISYGPRSND LLQ YGFVE +NPNDVY
Sbjct:  373 SGDEVYISYGPRSNDQLLQYYGFVERNNPNDVY 405
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84467.19693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LFY0_9PHAE2.200e-1986.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G028_ECTSI7.240e-1981.82Rubis-subs-bind domain-containing protein n=1 Tax=... [more]
A0A7S2E8C9_9STRA5.580e-1083.33Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3AC26_9RHOD8.030e-1061.36Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A8J4FZN4_9CHLO1.740e-960.98SET domain-containing protein n=1 Tax=Volvox retic... [more]
A0A7S3EP57_9RHOD2.380e-961.36Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A8J4F2B9_9CHLO3.260e-965.79SET domain-containing protein n=2 Tax=Volvox afric... [more]
A0A7S3FBI2_9VIRI4.290e-960.47Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A7S1MVV5_HEMAN4.430e-963.41Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
B7G3N0_PHATC4.460e-972.73Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84467contigM-pyrifera_M_contig84467:334..468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue8.7e-11
Seed eggNOG ortholog2880.D7G028
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K12177,ko:K19199
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.peptidyl-lysine monomethylation
EggNOG OGsKOG1337@1,KOG1337@2759
EC2.1.1.43
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko04121
Exons1
Model size135
Cds size114
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816752.0776672-CDS-M-pyrifera_M_contig84467:333..4471622816752.0776672-CDS-M-pyrifera_M_contig84467:333..447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84467 334..447 -
1692278157.2892587-CDS-M-pyrifera_M_contig84467:333..4471692278157.2892587-CDS-M-pyrifera_M_contig84467:333..447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84467 334..447 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816752.088677-UTR-M-pyrifera_M_contig84467:447..4681622816752.088677-UTR-M-pyrifera_M_contig84467:447..468Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84467 448..468 -
1692278157.300275-UTR-M-pyrifera_M_contig84467:447..4681692278157.300275-UTR-M-pyrifera_M_contig84467:447..468Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84467 448..468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84467.19693.1prot_M-pyrifera_M_contig84467.19693.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84467 334..447 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84467.19693.1

>prot_M-pyrifera_M_contig84467.19693.1 ID=prot_M-pyrifera_M_contig84467.19693.1|Name=mRNA_M-pyrifera_M_contig84467.19693.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=38bp
MFISYGPRSNDHLLQRYGFVEPSNPNDVYRITGLLDKV
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mRNA from alignment at M-pyrifera_M_contig84467:334..468-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84467.19693.1 ID=mRNA_M-pyrifera_M_contig84467.19693.1|Name=mRNA_M-pyrifera_M_contig84467.19693.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=135bp|location=Sequence derived from alignment at M-pyrifera_M_contig84467:334..468- (Macrocystis pyrifera P11B4 male)
GCGTGGGAGGCGGGAGAGCAGATGTTTATCAGCTACGGCCCGCGGTCCAA
CGACCACCTTTTGCAGCGGTACGGGTTCGTTGAGCCGAGCAACCCTAACG
ACGTCTACCGCATCACCGGGTTGCTCGACAAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84467:334..468-

>mRNA_M-pyrifera_M_contig84467.19693.1 ID=mRNA_M-pyrifera_M_contig84467.19693.1|Name=mRNA_M-pyrifera_M_contig84467.19693.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig84467:334..468- (Macrocystis pyrifera P11B4 male)
ATGTTTATCAGCTACGGCCCGCGGTCCAACGACCACCTTTTGCAGCGGTA
CGGGTTCGTTGAGCCGAGCAACCCTAACGACGTCTACCGCATCACCGGGT
TGCTCGACAAGGTGATGTTTATCAGCTACGGCCCGCGGTCCAACGACCAC
CTTTTGCAGCGGTACGGGTTCGTTGAGCCGAGCAACCCTAACGACGTCTA
CCGCATCACCGGGTTGCTCGACAAGGTG
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