mRNA_M-pyrifera_M_contig84429.19689.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84429.19689.1
Unique NamemRNA_M-pyrifera_M_contig84429.19689.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84429.19689.1 vs. uniprot
Match: A0A2C6KPF3_9APIC (Gtpase n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6KPF3_9APIC)

HSP 1 Score: 57.0 bits (136), Expect = 3.790e-8
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    1 EVRGWEPVEEREGMRALTVALTGAPNAGKSTLLNALVQQKVAAESPKRNTT 153
            +V  WEP E +E  R+L VAL G PNAGKS+LLNAL+ + ++A SPK NTT
Sbjct:  121 QVTTWEPPEPQERTRSLRVALIGPPNAGKSSLLNALLSRTLSAVSPKVNTT 171          
BLAST of mRNA_M-pyrifera_M_contig84429.19689.1 vs. uniprot
Match: A0A2A9MEM0_9APIC (GTPase n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9MEM0_9APIC)

HSP 1 Score: 55.8 bits (133), Expect = 9.720e-8
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 1
Query:   13 WEPVEEREGMRA--LTVALTGAPNAGKSTLLNALVQQKVAAESPKRNTT 153
            WEP E+ +G RA  L VAL G PNAGKS+LLNA++ QK++A SPK NTT
Sbjct:  212 WEPPEQPDGGRARSLRVALIGPPNAGKSSLLNAILGQKLSAVSPKVNTT 260          
BLAST of mRNA_M-pyrifera_M_contig84429.19689.1 vs. uniprot
Match: A0A7S1PF66_9ALVE (Hypothetical protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1PF66_9ALVE)

HSP 1 Score: 52.8 bits (125), Expect = 1.130e-6
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1
Query:   13 WEPVEEREGMRALTVALTGAPNAGKSTLLNALVQQKVAAESPKRNTT 153
            W+ + + E  + LTVAL G PNAGK++LLNA +  ++AA SPK NTT
Sbjct:  124 WDTISQPENPKGLTVALIGLPNAGKTSLLNAFLPHRIAAVSPKVNTT 170          
BLAST of mRNA_M-pyrifera_M_contig84429.19689.1 vs. uniprot
Match: A0A0G4EX21_VITBC (G domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EX21_VITBC)

HSP 1 Score: 52.8 bits (125), Expect = 1.190e-6
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1
Query:   13 WEPVEEREGMRALTVALTGAPNAGKSTLLNALVQQKVAAESPKRNTT 153
            W+ + + E  + LTVAL G PNAGK++LLNA +  ++AA SPK NTT
Sbjct:  423 WDTISQPENPKGLTVALIGLPNAGKTSLLNAFLPHRIAAVSPKVNTT 469          
BLAST of mRNA_M-pyrifera_M_contig84429.19689.1 vs. uniprot
Match: A0A7S3XZG4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZG4_HETAK)

HSP 1 Score: 52.0 bits (123), Expect = 2.200e-6
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 1
Query:   43 RALTVALTGAPNAGKSTLLNALVQQKVAAESPKRNTT 153
            R+L VA+ GAPNAGKSTLLN LV  KV+A SPKRNTT
Sbjct:   25 RSLDVAILGAPNAGKSTLLNLLVGGKVSAVSPKRNTT 61          
BLAST of mRNA_M-pyrifera_M_contig84429.19689.1 vs. uniprot
Match: A0A836CGG3_9STRA (G domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGG3_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.230e-6
Identity = 29/45 (64.44%), Postives = 32/45 (71.11%), Query Frame = 1
Query:   19 PVEEREGMRALTVALTGAPNAGKSTLLNALVQQKVAAESPKRNTT 153
            PV      R+L VA+ G PNAGKSTLLN LV  KV+A SPKRNTT
Sbjct:   40 PVGHNPLERSLDVAMVGLPNAGKSTLLNRLVGDKVSAVSPKRNTT 84          
BLAST of mRNA_M-pyrifera_M_contig84429.19689.1 vs. uniprot
Match: A0A813FCX9_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FCX9_POLGL)

HSP 1 Score: 51.6 bits (122), Expect = 3.040e-6
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 1
Query:    7 RGWEPVEEREGMRALTVALTGAPNAGKSTLLNALVQQKVAAESPKRNTT 153
            R WEP  +    R+L V L G PNAGKS+L+NA+++  ++A SPK NTT
Sbjct:  100 RSWEPPVQPSNPRSLRVGLAGCPNAGKSSLMNAILECPISAVSPKVNTT 148          
BLAST of mRNA_M-pyrifera_M_contig84429.19689.1 vs. uniprot
Match: A0A086M2Y1_TOXGO (GTPase (Fragment) n=1 Tax=Toxoplasma gondii RUB TaxID=935652 RepID=A0A086M2Y1_TOXGO)

HSP 1 Score: 51.2 bits (121), Expect = 4.160e-6
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1
Query:   13 WEPVEEREG--MRALTVALTGAPNAGKSTLLNALVQQKVAAESPKRNTT 153
            WEP  + E    ++L +AL G PNAGKS+LLNAL+ QK++A SPK NTT
Sbjct:  243 WEPPPQPESGCAKSLRIALIGPPNAGKSSLLNALLGQKLSAVSPKVNTT 291          
BLAST of mRNA_M-pyrifera_M_contig84429.19689.1 vs. uniprot
Match: S8FBH4_TOXGM (GTPase n=15 Tax=Toxoplasma gondii TaxID=5811 RepID=S8FBH4_TOXGM)

HSP 1 Score: 51.2 bits (121), Expect = 4.170e-6
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1
Query:   13 WEPVEEREG--MRALTVALTGAPNAGKSTLLNALVQQKVAAESPKRNTT 153
            WEP  + E    ++L +AL G PNAGKS+LLNAL+ QK++A SPK NTT
Sbjct:  243 WEPPPQPESGCAKSLRIALIGPPNAGKSSLLNALLGQKLSAVSPKVNTT 291          
BLAST of mRNA_M-pyrifera_M_contig84429.19689.1 vs. uniprot
Match: F0VD92_NEOCL (G domain-containing protein n=1 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=F0VD92_NEOCL)

HSP 1 Score: 50.8 bits (120), Expect = 5.450e-6
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1
Query:   13 WEPVEEREG--MRALTVALTGAPNAGKSTLLNALVQQKVAAESPKRNTT 153
            WEP  + E    ++L +AL G PNAGKS+L+NAL+ QK+ A SPK NTT
Sbjct:   76 WEPPPQPESGCAKSLRIALIGPPNAGKSSLMNALIGQKLCAVSPKVNTT 124          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84429.19689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2C6KPF3_9APIC3.790e-858.82Gtpase n=1 Tax=Cystoisospora suis TaxID=483139 Rep... [more]
A0A2A9MEM0_9APIC9.720e-863.27GTPase n=1 Tax=Besnoitia besnoiti TaxID=94643 RepI... [more]
A0A7S1PF66_9ALVE1.130e-653.19Hypothetical protein (Fragment) n=1 Tax=Vitrella b... [more]
A0A0G4EX21_VITBC1.190e-653.19G domain-containing protein n=2 Tax=Vitrella brass... [more]
A0A7S3XZG4_HETAK2.200e-675.68Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CGG3_9STRA2.230e-664.44G domain-containing protein n=1 Tax=Tribonema minu... [more]
A0A813FCX9_POLGL3.040e-651.02Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A086M2Y1_TOXGO4.160e-657.14GTPase (Fragment) n=1 Tax=Toxoplasma gondii RUB Ta... [more]
S8FBH4_TOXGM4.170e-657.14GTPase n=15 Tax=Toxoplasma gondii TaxID=5811 RepID... [more]
F0VD92_NEOCL5.450e-655.10G domain-containing protein n=1 Tax=Neospora canin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84429contigM-pyrifera_M_contig84429:710..862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816751.7248166-CDS-M-pyrifera_M_contig84429:709..8621622816751.7248166-CDS-M-pyrifera_M_contig84429:709..862Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84429 710..862 +
1692278157.0552592-CDS-M-pyrifera_M_contig84429:709..8621692278157.0552592-CDS-M-pyrifera_M_contig84429:709..862Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84429 710..862 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84429.19689.1prot_M-pyrifera_M_contig84429.19689.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84429 710..862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84429.19689.1

>prot_M-pyrifera_M_contig84429.19689.1 ID=prot_M-pyrifera_M_contig84429.19689.1|Name=mRNA_M-pyrifera_M_contig84429.19689.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=51bp
EVRGWEPVEEREGMRALTVALTGAPNAGKSTLLNALVQQKVAAESPKRNT
T
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mRNA from alignment at M-pyrifera_M_contig84429:710..862+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84429.19689.1 ID=mRNA_M-pyrifera_M_contig84429.19689.1|Name=mRNA_M-pyrifera_M_contig84429.19689.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=153bp|location=Sequence derived from alignment at M-pyrifera_M_contig84429:710..862+ (Macrocystis pyrifera P11B4 male)
GAAGTAAGAGGGTGGGAGCCTGTGGAGGAGAGAGAAGGGATGCGTGCATT AACTGTGGCTTTGACTGGAGCTCCAAATGCAGGGAAGAGTACCCTTTTGA ACGCATTGGTGCAACAAAAGGTTGCTGCAGAAAGTCCAAAGCGAAATACT ACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84429:710..862+

>mRNA_M-pyrifera_M_contig84429.19689.1 ID=mRNA_M-pyrifera_M_contig84429.19689.1|Name=mRNA_M-pyrifera_M_contig84429.19689.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig84429:710..862+ (Macrocystis pyrifera P11B4 male)
GAAGTAAGAGGGTGGGAGCCTGTGGAGGAGAGAGAAGGGATGCGTGCATT
AACTGTGGCTTTGACTGGAGCTCCAAATGCAGGGAAGAGTACCCTTTTGA
ACGCATTGGTGCAACAAAAGGTTGCTGCAGAAAGTCCAAAGCGAAATACT
ACCGAAGTAAGAGGGTGGGAGCCTGTGGAGGAGAGAGAAGGGATGCGTGC
ATTAACTGTGGCTTTGACTGGAGCTCCAAATGCAGGGAAGAGTACCCTTT
TGAACGCATTGGTGCAACAAAAGGTTGCTGCAGAAAGTCCAAAGCGAAAT
ACTACC
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