mRNA_M-pyrifera_M_contig84418.19684.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84418.19684.1
Unique NamemRNA_M-pyrifera_M_contig84418.19684.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84418.19684.1 vs. uniprot
Match: A0A4D9CZ29_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ29_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.250e-8
Identity = 38/95 (40.00%), Postives = 48/95 (50.53%), Query Frame = 1
Query:   34 VFNELEAAGGDDRAAV-WLGQRLYWGRGGVQRDPVRAAQYFQGAAAQGNRVAEYNLGVMQLRGE-----GGMEPNHRQALRHFARAADAGYAPAL 300
             +  + A  G+D  A+ W  Q LYWGR GV  D V A +  + AA  GN  A+YN G+M LRGE     G  E    +      RAA  G+ PAL
Sbjct:  794 AYMRMRAKDGEDAEALAWYAQALYWGRHGVHPDRVAAERMMERAAVLGNAEAQYNAGIMLLRGEDRPGEGAAEQRAARGEELVDRAARQGFFPAL 888          
BLAST of mRNA_M-pyrifera_M_contig84418.19684.1 vs. uniprot
Match: W7TFF4_9STRA (Tetratricopeptide-like helical n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFF4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.090e-7
Identity = 37/95 (38.95%), Postives = 47/95 (49.47%), Query Frame = 1
Query:   34 VFNELEAAGGDDRAAV-WLGQRLYWGRGGVQRDPVRAAQYFQGAAAQGNRVAEYNLGVMQLRGE-----GGMEPNHRQALRHFARAADAGYAPAL 300
             +  + A  G D  A+ W  Q LYWG+ GV  D V A +  + AA  GN  A+YN G+M LRGE     G  E    +      RAA  G+ PAL
Sbjct:  414 AYMRMRAEDGQDAEALAWYAQALYWGKHGVHPDRVAAERMMERAAELGNAEAQYNAGIMLLRGEDRPGEGAAEQRVARGEELVDRAARQGFFPAL 508          
BLAST of mRNA_M-pyrifera_M_contig84418.19684.1 vs. uniprot
Match: A0A7S0T3A5_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T3A5_9RHOD)

HSP 1 Score: 54.3 bits (129), Expect = 4.980e-7
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 1
Query:  115 GVQRDPVRAAQYFQGAAAQGNRVAEYNLGVMQLRGEGGMEPNHRQALRHFARAADAGY 288
            GV+RD   AA+ F+ AAA G+  A YNLGV+QLRG+GG++ +  QA   F  AA  G+
Sbjct:   60 GVERDANAAARKFKEAAALGSAEAMYNLGVLQLRGDGGVDQSPPQAFASFVAAARRGH 117          
BLAST of mRNA_M-pyrifera_M_contig84418.19684.1 vs. uniprot
Match: A0A4Y8RNP0_9HYPH (Sel1 repeat family protein n=2 Tax=Jiella endophytica TaxID=2558362 RepID=A0A4Y8RNP0_9HYPH)

HSP 1 Score: 55.1 bits (131), Expect = 1.710e-6
Identity = 34/73 (46.58%), Postives = 44/73 (60.27%), Query Frame = 1
Query:  109 RGGVQRDPVRAAQYFQGAAAQGNRVAEYNLGVMQLRGEGGMEPNHRQALRHFARAADAGYAPALTGLADAHLN 327
            + G  RDP RAA   + AA +G  VA  N+G     G+G +  N  +ALR F RAA AG  PA+T LA+AHL+
Sbjct:  387 KSGPDRDPARAALLHRKAAGKGLMVAVANVGFDLWHGDG-VNENRPEALRWFERAAQAGSVPAMTMLAEAHLD 458          
BLAST of mRNA_M-pyrifera_M_contig84418.19684.1 vs. uniprot
Match: Q2WAU9_MAGSA (TPR repeat SEL1 subfamily n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) TaxID=342108 RepID=Q2WAU9_MAGSA)

HSP 1 Score: 54.3 bits (129), Expect = 2.390e-6
Identity = 35/79 (44.30%), Postives = 46/79 (58.23%), Query Frame = 1
Query:   61 GDDRAAVWLGQRLYWGRGGVQRDPVRAAQYFQGAAAQGNRVAEYNLGVMQLRGEGGMEPNHRQALRHFARAADAGYAPA 297
            GD  AA  LG  LY    GV+ D   AA ++Q AA  G   AEYNLG++ LRG  G+  +  + +R   +AA+AGY PA
Sbjct:   66 GDGEAARNLGH-LYRQGLGVEADGHMAAAWYQVAADAGVVSAEYNLGMLYLRGGPGLPGDQAEGMRRLGKAAEAGYLPA 143          
BLAST of mRNA_M-pyrifera_M_contig84418.19684.1 vs. uniprot
Match: UPI0018D16374 (caspase family protein n=1 Tax=Methylobrevis albus TaxID=2793297 RepID=UPI0018D16374)

HSP 1 Score: 54.3 bits (129), Expect = 3.180e-6
Identity = 32/89 (35.96%), Postives = 53/89 (59.55%), Query Frame = 1
Query:   34 VFNELEAAGGDDRAAVWLGQRLYWGRG-GVQRDPVRAAQYFQGAAAQGNRVAEYNLGVMQLRGEGGMEPNHRQALRHFARAADAGYAPA 297
             +N L  A  +D  A +     ++ +G GV +DPV+A + F  AA +G+   +YN+GVM+L G+ G+E ++R+AL+    +A   YA A
Sbjct:  350 AYNRLAMA--EDYLAAYHNMGNHYKKGAGVPKDPVKAMELFLYAAERGHPEDQYNVGVMRLNGDTGIEVDYREALKWLTASAKQDYASA 436          
BLAST of mRNA_M-pyrifera_M_contig84418.19684.1 vs. uniprot
Match: A0A6J0SI95_9SAUR (protein sel-1 homolog 3 n=1 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0SI95_9SAUR)

HSP 1 Score: 54.3 bits (129), Expect = 3.340e-6
Identity = 32/95 (33.68%), Postives = 57/95 (60.00%), Query Frame = 1
Query:   28 LKVFNELEAAGGDDRAAVWLGQRLYWGRGGVQRDPVRAAQYF-QGAAAQGNRVAEYNLGVMQLRGEGGMEPNHRQALRHFARAADAGYAPALTGL 309
            L ++ + EAA GD  A   LGQ L+WG+ GVQ++P  A +++ +GA    + ++ Y+  ++  +G+G ++ N R A++   +AA  G   A+ GL
Sbjct:  649 LFMWLKHEAARGDAAAQQRLGQMLFWGQQGVQKNPKAAVEWYAKGALETEDLISIYDYSIVLFKGQG-VKKNRRLAVQLMRKAASKGLPQAVNGL 742          
BLAST of mRNA_M-pyrifera_M_contig84418.19684.1 vs. uniprot
Match: A0A7S2WTQ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTQ3_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 3.580e-6
Identity = 28/46 (60.87%), Postives = 31/46 (67.39%), Query Frame = 1
Query:  172 GNRVAEYNLGVMQLRGEGGMEPNHRQALRHFARAADAGYAPALTGL 309
            G+  A YNLGVMQL GEG   PN R+A   F +AAD GY PA TGL
Sbjct:    1 GDGEALYNLGVMQLNGEGPFTPNPREAENLFQQAADQGYGPAHTGL 46          
BLAST of mRNA_M-pyrifera_M_contig84418.19684.1 vs. uniprot
Match: A0A1W6CP90_9PROT (SPOR domain-containing protein n=2 Tax=Magnetospirillum sp. ME-1 TaxID=1639348 RepID=A0A1W6CP90_9PROT)

HSP 1 Score: 52.8 bits (125), Expect = 8.070e-6
Identity = 35/79 (44.30%), Postives = 45/79 (56.96%), Query Frame = 1
Query:   61 GDDRAAVWLGQRLYWGRGGVQRDPVRAAQYFQGAAAQGNRVAEYNLGVMQLRGEGGMEPNHRQALRHFARAADAGYAPA 297
            GD  AA  LG  LY    GV+ D   AA ++Q AA  G   A+YNLG++ LRG  G+ P+  Q +    +AA AGY PA
Sbjct:   66 GDHEAARNLGH-LYRQGLGVEADGHIAAAWYQVAADGGVISADYNLGMLYLRGGPGLPPDKEQGMARLGKAAAAGYIPA 143          
BLAST of mRNA_M-pyrifera_M_contig84418.19684.1 vs. uniprot
Match: UPI00192F1EFE (protein sel-1 homolog 3 isoform X1 n=2 Tax=Crotalus tigris TaxID=88082 RepID=UPI00192F1EFE)

HSP 1 Score: 52.4 bits (124), Expect = 1.520e-5
Identity = 31/88 (35.23%), Postives = 52/88 (59.09%), Query Frame = 1
Query:   49 EAAGGDDRAAVWLGQRLYWGRGGVQRDPVRAAQYF-QGAAAQGNRVAEYNLGVMQLRGEGGMEPNHRQALRHFARAADAGYAPALTGL 309
            EA  GD  A   LGQ L+WG+ GV+++   A +++ QGA    + V+ ++  ++  +G+G ++ N R ALR   +AA  G+  A+ GL
Sbjct:  176 EAVRGDSAAQQRLGQMLFWGQQGVEKNLKAAVEWYAQGALGNEDPVSLFDYSIVLFKGQG-VKRNKRLALRLMKKAASKGFPQAVNGL 262          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84418.19684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A4D9CZ29_9STRA1.250e-840.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TFF4_9STRA1.090e-738.95Tetratricopeptide-like helical n=1 Tax=Nannochloro... [more]
A0A7S0T3A5_9RHOD4.980e-750.00Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]
A0A4Y8RNP0_9HYPH1.710e-646.58Sel1 repeat family protein n=2 Tax=Jiella endophyt... [more]
Q2WAU9_MAGSA2.390e-644.30TPR repeat SEL1 subfamily n=1 Tax=Magnetospirillum... [more]
UPI0018D163743.180e-635.96caspase family protein n=1 Tax=Methylobrevis albus... [more]
A0A6J0SI95_9SAUR3.340e-633.68protein sel-1 homolog 3 n=1 Tax=Pogona vitticeps T... [more]
A0A7S2WTQ3_9STRA3.580e-660.87Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A1W6CP90_9PROT8.070e-644.30SPOR domain-containing protein n=2 Tax=Magnetospir... [more]
UPI00192F1EFE1.520e-535.23protein sel-1 homolog 3 isoform X1 n=2 Tax=Crotalu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84418contigM-pyrifera_M_contig84418:442..768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue5e-11
Seed eggNOG ortholog55529.EKX44135
KEGG koko:K07126,ko:K14026
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ERAD pathway
EggNOG OGsCOG0790@1,KOG1550@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons1
Model size327
Cds size327
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816751.4965363-CDS-M-pyrifera_M_contig84418:441..7681622816751.4965363-CDS-M-pyrifera_M_contig84418:441..768Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84418 442..768 +
1692278156.9112322-CDS-M-pyrifera_M_contig84418:441..7681692278156.9112322-CDS-M-pyrifera_M_contig84418:441..768Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84418 442..768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84418.19684.1prot_M-pyrifera_M_contig84418.19684.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84418 442..768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84418.19684.1

>prot_M-pyrifera_M_contig84418.19684.1 ID=prot_M-pyrifera_M_contig84418.19684.1|Name=mRNA_M-pyrifera_M_contig84418.19684.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
MGERGDEDSLKVFNELEAAGGDDRAAVWLGQRLYWGRGGVQRDPVRAAQY
FQGAAAQGNRVAEYNLGVMQLRGEGGMEPNHRQALRHFARAADAGYAPAL
TGLADAHLN
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mRNA from alignment at M-pyrifera_M_contig84418:442..768+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84418.19684.1 ID=mRNA_M-pyrifera_M_contig84418.19684.1|Name=mRNA_M-pyrifera_M_contig84418.19684.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig84418:442..768+ (Macrocystis pyrifera P11B4 male)
ATGGGTGAACGTGGAGACGAAGACTCTCTCAAAGTATTCAATGAATTAGA AGCTGCTGGTGGTGATGATCGTGCTGCTGTTTGGCTTGGACAACGATTGT ATTGGGGACGTGGGGGTGTACAGCGCGATCCAGTGCGTGCAGCACAATAT TTCCAAGGTGCAGCAGCACAAGGAAATCGCGTTGCAGAATACAATCTTGG GGTCATGCAGTTGCGAGGTGAGGGTGGGATGGAACCCAATCATAGACAAG CGTTGCGACACTTTGCAAGAGCTGCAGACGCTGGATATGCTCCTGCGCTT ACAGGTCTCGCAGATGCACATCTCAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84418:442..768+

>mRNA_M-pyrifera_M_contig84418.19684.1 ID=mRNA_M-pyrifera_M_contig84418.19684.1|Name=mRNA_M-pyrifera_M_contig84418.19684.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig84418:442..768+ (Macrocystis pyrifera P11B4 male)
ATGGGTGAACGTGGAGACGAAGACTCTCTCAAAGTATTCAATGAATTAGA
AGCTGCTGGTGGTGATGATCGTGCTGCTGTTTGGCTTGGACAACGATTGT
ATTGGGGACGTGGGGGTGTACAGCGCGATCCAGTGCGTGCAGCACAATAT
TTCCAAGGTGCAGCAGCACAAGGAAATCGCGTTGCAGAATACAATCTTGG
GGTCATGCAGTTGCGAGGTGAGGGTGGGATGGAACCCAATCATAGACAAG
CGTTGCGACACTTTGCAAGAGCTGCAGACGCTGGATATGCTCCTGCGCTT
ACAGGTCTCGCAGATGCACATCTCAATATGGGTGAACGTGGAGACGAAGA
CTCTCTCAAAGTATTCAATGAATTAGAAGCTGCTGGTGGTGATGATCGTG
CTGCTGTTTGGCTTGGACAACGATTGTATTGGGGACGTGGGGGTGTACAG
CGCGATCCAGTGCGTGCAGCACAATATTTCCAAGGTGCAGCAGCACAAGG
AAATCGCGTTGCAGAATACAATCTTGGGGTCATGCAGTTGCGAGGTGAGG
GTGGGATGGAACCCAATCATAGACAAGCGTTGCGACACTTTGCAAGAGCT
GCAGACGCTGGATATGCTCCTGCGCTTACAGGTCTCGCAGATGCACATCT
CAAT
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