mRNA_M-pyrifera_M_contig84409.19682.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84409.19682.1
Unique NamemRNA_M-pyrifera_M_contig84409.19682.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84409.19682.1 vs. uniprot
Match: L8H7Y7_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H7Y7_ACACA)

HSP 1 Score: 148 bits (374), Expect = 8.400e-42
Identity = 72/159 (45.28%), Postives = 100/159 (62.89%), Query Frame = 1
Query:    7 CNDPLYEQDVVEVFVAPALPAGQAMHNYLELELSPNGILFSANVTNPNLTCLGIEDGMLDCSLFQYSQAGIVAGTELWWGEIGVPFSVLNQFDADP------------STAGSVYRTNMFRVDRPRGEDI-EYSCWNCDHSTPGTPCFHRPTAFGYAYL 444
            CNDPL+ QDVVE F+ PA   G+ + NYLE+ELSPN +LF++N+TNP LTC  I    L CSLF Y +A      ++WWG+I +P++VL++F                +  GS +RTN FR+DRP      E+SC++CD S+P  PCFH+P  F Y ++
Sbjct:   97 CNDPLFNQDVVEAFIGPARVDGKPITNYLEIELSPNSVLFASNITNPGLTCSTISGTYLPCSLFNY-KATRFDSRKIWWGQIDLPWAVLHKFRTAEQQQHDGFHSIVGAPVGSTWRTNFFRIDRPAATQTREFSCFSCDESSP--PCFHKPAYFAYLHV 252          
BLAST of mRNA_M-pyrifera_M_contig84409.19682.1 vs. uniprot
Match: F1A4I6_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A4I6_DICPU)

HSP 1 Score: 128 bits (321), Expect = 4.370e-34
Identity = 66/147 (44.90%), Postives = 96/147 (65.31%), Query Frame = 1
Query:    4 QCNDPLYEQDVVEVFVAPALPAGQAMHNYLELELSPNGILFSANVTNPNLTCLGIEDGMLDCSLFQYSQAGIV--AG--TELWWGEIGVPFSVLNQFDADPSTAGSVYRTNMFRVDRPRGEDIEYSCWNCDHSTPGTPCFHRPTAFG 432
            QCN  L++ DV E+F+A    A     NYLE+ELSP G+LF ++V NPN  C+GI+D ++DC      Q+GI+  AG  T  W GE+ +PFS++ +   +PS + +VY+ NMFR+D P+    EYSC++ D++ P  PCFH P+ FG
Sbjct:   88 QCNQDLFDADVFEIFLAYT-DANSVAVNYLEVELSPYGVLFVSSVYNPNDACVGIQDNLVDCD-----QSGIIYEAGPVTSGWSGELSIPFSLIQKASGNPSGSNNVYKLNMFRIDVPQYGYKEYSCYHADNTNP--PCFHVPSYFG 226          
BLAST of mRNA_M-pyrifera_M_contig84409.19682.1 vs. uniprot
Match: Q54EU8_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54EU8_DICDI)

HSP 1 Score: 115 bits (289), Expect = 2.790e-29
Identity = 61/146 (41.78%), Postives = 85/146 (58.22%), Query Frame = 1
Query:    7 CNDPLYEQDVVEVFVAPALPAGQAMHNYLELELSPNGILFSANVTNPNLTCLGIEDGMLDCSLFQYSQAGIVAGTEL----WWGEIGVPFSVLNQFDADPSTAGSVYRTNMFRVDRPRGEDIEYSCWNCDHSTPGTPCFHRPTAFG 432
            CN  L+  DV E F++   PA Q   NYLE+ELSP G+LF + V NPN  C GI+D ++DC      Q+GI+ G       W G + +PF ++ +      T G +Y+ NMFR+D P     EYSC++ D++ P  PCFH P+ FG
Sbjct:   90 CNQDLFNADVFETFLSYG-PADQVAVNYLEVELSPYGVLFVSLVNNPNDQCDGIQDTLVDCG-----QSGIIYGASTINDGWEGTLRIPFQLIQKASQYSETEGYIYKFNMFRIDVPLYNYKEYSCYHADNTNP--PCFHVPSYFG 227          
BLAST of mRNA_M-pyrifera_M_contig84409.19682.1 vs. uniprot
Match: F4QCN6_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QCN6_CAVFA)

HSP 1 Score: 111 bits (278), Expect = 2.120e-27
Identity = 63/155 (40.65%), Postives = 87/155 (56.13%), Query Frame = 1
Query:    4 QCNDPLYEQDVVEVFVAPALPAGQAMHNYLELELSPNGILFSANVTNPNLTCLGIEDGMLDCSLFQYSQAGIVAGTEL----WWGEIGVPFSVLNQFDA----DPSTAGSVYRTNMFRVDRPRGEDIEYSCWNCDHSTPGTPCFHRPTAFGYAYL 444
            QCN  L+  DV EVF++      +A   YLE+ELSP+G+LF   V NPN  C GIED ++DC      Q+GI+    +    W G + +PF+++++        P   GS +R NMFR+D P G   EYS W+    +P  PCFH P+ FGY  L
Sbjct:   77 QCNQDLFNADVFEVFLSSD-STDEAPTYYLEVELSPHGVLFVTYVVNPNGVCNGIEDTLVDCG-----QSGIIYNATINSQGWNGYLLIPFNLIDKASRVSPPTPIKPGSQFRINMFRIDTPLGSYKEYSAWHPTDESP--PCFHVPSKFGYLTL 223          
BLAST of mRNA_M-pyrifera_M_contig84409.19682.1 vs. uniprot
Match: UPI000644B447 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644B447)

HSP 1 Score: 109 bits (272), Expect = 9.000e-27
Identity = 61/156 (39.10%), Postives = 84/156 (53.85%), Query Frame = 1
Query:    4 QCNDPLYEQDVVEVFVAPALPAGQAMHNYLELELSPNGILFSANVTNPNLTCLGIEDGMLDC--SLFQYSQAGIVAGTELWWGEIGVPFSVLNQFD-----ADPSTAGSVYRTNMFRVDRPRGEDI-EYSCWNCDHSTPGTPCFHRPTAFGYAYLV 447
            +CN  L++ DV EVF++          NYLE+ELSP G+LF +NV N +  C GI D ++DC  S  QY+      G   W G + +PFS +           P + G+ +R NM+R+D P    + EYSCWN    +P   CFH P+ FGY  LV
Sbjct:   82 ECNQDLFQSDVFEVFISEGF---NQPTNYLEVELSPYGVLFVSNVANTDNDCSGITDTLIDCGASGIQYNSTATPTG---WLGYLALPFSTIQNATYAASAVRPDSYGTQFRMNMYRIDTPSQTYVKEYSCWNPTDKSPA--CFHVPSTFGYITLV 229          
BLAST of mRNA_M-pyrifera_M_contig84409.19682.1 vs. uniprot
Match: A0A8J4PSK3_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PSK3_9MYCE)

HSP 1 Score: 107 bits (267), Expect = 8.920e-26
Identity = 56/149 (37.58%), Postives = 83/149 (55.70%), Query Frame = 1
Query:    4 QCNDPLYEQDVVEVFVA--PALPAGQAMHNYLELELSPNGILFSANVTNPNLTCLGIEDGMLDCSLFQYSQAGIVAGTELWWGEIGVPFSVL----NQFDADPSTAGSVYRTNMFRVDRPRGEDIEYSCWNCDHSTPGTPCFHRPTAFG 432
            QCN  L+  DV E+F+A  P +P       YLE+ELSP G+LF + V N +  C G+ D +++C          +   E W G + +P S++    N  +  PS    +YR NM+R+D P  ++ EYSCWN   ++P  PCFH+P+ FG
Sbjct:  104 QCNQDLFNADVFEIFLAYGPEVPT-----KYLEIELSPYGVLFVSKVANTDDFCTGVTDSLIECGASGIVYNATIQDNE-WVGILQIPLSLIQETSNLAEPQPSPQLPLYRINMYRIDIPASQEKEYSCWNPTDTSP--PCFHKPSMFG 244          
BLAST of mRNA_M-pyrifera_M_contig84409.19682.1 vs. uniprot
Match: A0A7S4IA77_9EUKA (Hypothetical protein n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IA77_9EUKA)

HSP 1 Score: 102 bits (254), Expect = 4.130e-24
Identity = 49/83 (59.04%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    4 QCNDPLYEQDVVEVFVAPALPAGQAMHNYLELELSPNGILFSANVTNPNLTCLGIEDGMLDCSLFQYSQAGIVAGTELWWGEI 252
            +CN  LY  DVVEVF+AP LP   A+HNY+ELELSPNG+LF+ANVTNP+LTC GI+D    CS FQYS     A  + W+G +
Sbjct:   93 ECNQHLYNDDVVEVFIAPQLPNDAAIHNYIELELSPNGVLFAANVTNPDLTCSGIQDDPFPCSDFQYSATRNDA-QDNWYGSM 174          
BLAST of mRNA_M-pyrifera_M_contig84409.19682.1 vs. uniprot
Match: A0A152AA59_9MYCE (Carb-bd_dom_fam9 domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152AA59_9MYCE)

HSP 1 Score: 100 bits (248), Expect = 4.170e-23
Identity = 56/156 (35.90%), Postives = 80/156 (51.28%), Query Frame = 1
Query:    7 CNDPLYEQDVVEVFVAPALPAGQAMHNYLELELSPNGILFSANVTNPNLTCLGIEDGMLDCSLFQYSQAGIVAGTEL------WWGEIGVPFSVLNQFDADPSTAGS-------VYRTNMFRVDRPRGEDIEYSCWNCDHSTPGTPCFHRPTAFGY 435
            CND LY+ D  EVF+A           YLE+ELSP G+LF + + NP   C  I   ++DC      Q+GI+    +      W G + +P  ++ Q  +  S+ GS         R NMFR+D P    ++++CWN   + P  PCFH P+AFGY
Sbjct:   90 CNDDLYKADAFEVFLAYG---SNQPEFYLEIELSPMGVLFVSKIYNPGDACSTISGTLIDCG-----QSGIIYNATVYDQFNTWVGTLRIPLELIYQTSSSSSSEGSSQPLTPSTLRFNMFRIDVPLNSPMQFACWNPTDANP--PCFHIPSAFGY 235          
BLAST of mRNA_M-pyrifera_M_contig84409.19682.1 vs. uniprot
Match: D3BHE4_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BHE4_POLPP)

HSP 1 Score: 99.0 bits (245), Expect = 1.040e-22
Identity = 59/154 (38.31%), Postives = 80/154 (51.95%), Query Frame = 1
Query:    7 CNDPLYEQDVVEVFVAPALPAGQAMHNYLELELSPNGILFSANVTNPNLTCLGIEDGMLDCSLFQYSQAGIVAGTELWWGEIGVPFSVL------NQFDADPSTAGSVYRTNMFRVDRPRGED-IEYSCWNCDHSTPGTPCFHRPTAFGYAYLV 447
            CN+ LY  DV EVF++      Q   NYLE+ELSP G+LF A V N + +C GI D ++ C   +   +  V     + G + +PF+ +      N      S+  + YR NM+RVD P      EYSCW+     P  PCFH P+ FGY  LV
Sbjct:   86 CNEHLYNYDVFEVFLSVG---HQQPTNYLEVELSPRGVLFVAQVANTDDSCSGITDTLIGCPESEIEYSAQVIPNLGYQGFLSIPFATIQNATYPNGAVEQSSSFNTQYRMNMYRVDFPTTTSPTEYSCWSPTFMNP--PCFHVPSTFGYITLV 234          
BLAST of mRNA_M-pyrifera_M_contig84409.19682.1 vs. uniprot
Match: Q22XU8_TETTS (Carb-bd_dom_fam9 domain-containing protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q22XU8_TETTS)

HSP 1 Score: 97.4 bits (241), Expect = 4.350e-22
Identity = 55/149 (36.91%), Postives = 80/149 (53.69%), Query Frame = 1
Query:    4 QCNDPLYEQDVVEVFVAPALPAGQAMHNYLELELSPNGILFSANVTNPNLTCLGIEDGMLDCSLFQYSQAGIVAGTELWWGEIGVPFSVLNQFDADPSTAGSVY-RTNMFRVDRPRGEDIEYSCWNCDHSTPGTPCFHRPTAFGYAYLV 447
            QCNDPLY QDVVEVF+         +  YLE+E++P G LF+AN+TN N +C GI D ++ C+     + GI    ++   + G   +          T  + + + N FR+D     DI+YSCW   + +P   CFH P+ FG  +LV
Sbjct:  101 QCNDPLYNQDVVEVFLGTP---ENYLTEYLEVEVNPQGALFAANITNTNNSCSGISDSLIPCN-----ETGIFYSAQI--ADFGYKANAQIPVKLVTGTQQAYHLKGNFFRIDYAFNGDIDYSCWRPTYVSPA--CFHVPSQFGDIFLV 237          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84409.19682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8H7Y7_ACACA8.400e-4245.28Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
F1A4I6_DICPU4.370e-3444.90Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
Q54EU8_DICDI2.790e-2941.78Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
F4QCN6_CAVFA2.120e-2740.65Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
UPI000644B4479.000e-2739.10hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A8J4PSK3_9MYCE8.920e-2637.58Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A7S4IA77_9EUKA4.130e-2459.04Hypothetical protein n=2 Tax=Vannella sp. CB-2014 ... [more]
A0A152AA59_9MYCE4.170e-2335.90Carb-bd_dom_fam9 domain-containing protein n=1 Tax... [more]
D3BHE4_POLPP1.040e-2238.31Uncharacterized protein n=1 Tax=Polysphondylium pa... [more]
Q22XU8_TETTS4.350e-2236.91Carb-bd_dom_fam9 domain-containing protein n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84409contigM-pyrifera_M_contig84409:51..800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue8.2e-28
Seed eggNOG ortholog5786.XP_003294582.1
Hectar predicted targeting categoryother localisation
EggNOG OGs295PN@1,2RCMY@2759,3XB63@554915
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons2
Model size450
Cds size450
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816751.3961122-CDS-M-pyrifera_M_contig84409:50..2571622816751.3961122-CDS-M-pyrifera_M_contig84409:50..257Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84409 51..257 +
1692278156.872451-CDS-M-pyrifera_M_contig84409:50..2571692278156.872451-CDS-M-pyrifera_M_contig84409:50..257Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84409 51..257 +
1622816751.4144113-CDS-M-pyrifera_M_contig84409:557..8001622816751.4144113-CDS-M-pyrifera_M_contig84409:557..800Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84409 558..800 +
1692278156.8863869-CDS-M-pyrifera_M_contig84409:557..8001692278156.8863869-CDS-M-pyrifera_M_contig84409:557..800Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84409 558..800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84409.19682.1prot_M-pyrifera_M_contig84409.19682.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84409 51..800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84409.19682.1

>prot_M-pyrifera_M_contig84409.19682.1 ID=prot_M-pyrifera_M_contig84409.19682.1|Name=mRNA_M-pyrifera_M_contig84409.19682.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
MQCNDPLYEQDVVEVFVAPALPAGQAMHNYLELELSPNGILFSANVTNPN
LTCLGIEDGMLDCSLFQYSQAGIVAGTELWWGEIGVPFSVLNQFDADPST
AGSVYRTNMFRVDRPRGEDIEYSCWNCDHSTPGTPCFHRPTAFGYAYLV*
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mRNA from alignment at M-pyrifera_M_contig84409:51..800+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84409.19682.1 ID=mRNA_M-pyrifera_M_contig84409.19682.1|Name=mRNA_M-pyrifera_M_contig84409.19682.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig84409:51..800+ (Macrocystis pyrifera P11B4 male)
ATGCAGTGCAACGACCCCCTGTATGAGCAGGATGTGGTGGAGGTGTTCGT CGCTCCAGCCCTGCCTGCTGGCCAGGCAATGCACAATTACCTGGAGCTGG AGCTCAGCCCCAATGGCATCCTCTTCTCGGCCAATGTGACCAACCCCAAC TTGACCTGCCTCGGTATCGAGGACGGCATGCTGGATTGCTCTCTCTTCCA GTACAGCGTAAGTGGTAGACGTGGCCAGCAGCGGCGACGAATGTGCTACG ACAGCTCATCCTTTTGACAGTATGCGGTTGAGAGGGTGGGAGAGAGAGAG AGAGAGAGCAAGGGAGGGAGGGAGGGATTGGAGAGCGTGTTGGAAAGGGA GAGAGGAGAGGGGGGAGTGCGTACTACAGCGGGGGAGAGAGAAGGTGTGG GAAAAGAGAGATAGAAGGGAGACAGCATGGAAAAGAGAAGAGTGTATCAT GGAGACAAACTTGAAGCTCTCACGAGGCATCCACAACATGGATTGTTCTG ACCGTAGCAGGCTGGAATCGTTGCTGGAACAGAGTTGTGGTGGGGGGAGA TTGGCGTACCTTTCTCGGTCTTGAACCAGTTTGACGCAGACCCGTCGACT GCAGGCTCGGTGTATCGCACGAACATGTTCCGTGTGGACAGGCCAAGGGG CGAGGACATCGAGTACAGCTGCTGGAACTGTGACCACAGCACGCCTGGCA CGCCCTGCTTCCACCGCCCCACAGCCTTCGGCTACGCGTACCTCGTGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84409:51..800+

>mRNA_M-pyrifera_M_contig84409.19682.1 ID=mRNA_M-pyrifera_M_contig84409.19682.1|Name=mRNA_M-pyrifera_M_contig84409.19682.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig84409:51..800+ (Macrocystis pyrifera P11B4 male)
ATGCAGTGCAACGACCCCCTGTATGAGCAGGATGTGGTGGAGGTGTTCGT
CGCTCCAGCCCTGCCTGCTGGCCAGGCAATGCACAATTACCTGGAGCTGG
AGCTCAGCCCCAATGGCATCCTCTTCTCGGCCAATGTGACCAACCCCAAC
TTGACCTGCCTCGGTATCGAGGACGGCATGCTGGATTGCTCTCTCTTCCA
GTACAGCATGCAGTGCAACGACCCCCTGTATGAGCAGGATGTGGTGGAGG
TGTTCGTCGCTCCAGCCCTGCCTGCTGGCCAGGCAATGCACAATTACCTG
GAGCTGGAGCTCAGCCCCAATGGCATCCTCTTCTCGGCCAATGTGACCAA
CCCCAACTTGACCTGCCTCGGTATCGAGGACGGCATGCTGGATTGCTCTC
TCTTCCAGTACAGCCAGGCTGGAATCGTTGCTGGAACAGAGTTGTGGTGG
GGGGAGATTGGCGTACCTTTCTCGGTCTTGAACCAGTTTGACGCAGACCC
GTCGACTGCAGGCTCGGTGTATCGCACGAACATGTTCCGTGTGGACAGGC
CAAGGGGCGAGGACATCGAGTACAGCTGCTGGAACTGTGACCACAGCACG
CCTGGCACGCCCTGCTTCCACCGCCCCACAGCCTTCGGCTACGCGTACCT
CGTGTAACAGGCTGGAATCGTTGCTGGAACAGAGTTGTGGTGGGGGGAGA
TTGGCGTACCTTTCTCGGTCTTGAACCAGTTTGACGCAGACCCGTCGACT
GCAGGCTCGGTGTATCGCACGAACATGTTCCGTGTGGACAGGCCAAGGGG
CGAGGACATCGAGTACAGCTGCTGGAACTGTGACCACAGCACGCCTGGCA
CGCCCTGCTTCCACCGCCCCACAGCCTTCGGCTACGCGTACCTCGTGTAA
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