mRNA_M-pyrifera_M_contig84405.19680.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84405.19680.1
Unique NamemRNA_M-pyrifera_M_contig84405.19680.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84405.19680.1 vs. uniprot
Match: A0A6N9ENH8_9ACTN (DNA helicase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6N9ENH8_9ACTN)

HSP 1 Score: 213 bits (541), Expect = 3.670e-61
Identity = 123/277 (44.40%), Postives = 171/277 (61.73%), Query Frame = 1
Query:    4 GFGSPEKLLLKDDFTPETLRTQIGKLAQGGGR--LSASDETEVRGRLYPELVIVDRSKPSDGKLMFDPPSATSSEALAVLDRDQERLARHIGDGYRVIKGVAGSGKSLVITFRARFLAENFPHKNYLVACYNRVLADSLKIQLADYPNIRVATVDEVASEVCWKEGIRVSGRGNEKFREQQAAALRVMRSRPIAKLLVDAVLVDEAQDLDDVGTELAHSFLQPGADHFVIALDAAQSIYRRQSRWTPEGVTGRGRTKLLRLNYRNTREILEAAYNFL 828
            GF +   LL  +DF  E L   + ++A GG R  L   +E+  R  + P +VI    + + G+L F P S +  E L  LDR QERLA  +G GYR+I+GVAGSGK+LV+T+RAR +A +FP    L+ C+N+ L+ +L  Q+A+Y  +RV T+D +A  V    G    G     F  ++ AA++ + +   +KL  D VLVDEAQDLD+ G  LA + L+PG DHFV+ALD AQ IYRR+  W P G+T RGRT +L +NYRNTR+IL+     L
Sbjct:  148 GFRADVPLLCAEDFAIEALGPALQEIA-GGRRAHLPQEEESAARAAVNPGIVI----RGTQGQL-FAPQSKSDDEILRTLDRKQERLAHSLGPGYRLIRGVAGSGKTLVLTYRARHMARHFPRWRILLLCFNKALSLALSHQVAEYDGVRVHTLDALALRVLAAAGRAPDGEDKPDFDRRRRAAIQAVTAVDHSKLF-DMVLVDEAQDLDEAGLNLAWAMLKPGRDHFVMALDGAQMIYRRRMTWNPPGMTARGRTTILNVNYRNTRQILDLGRELL 417          
BLAST of mRNA_M-pyrifera_M_contig84405.19680.1 vs. uniprot
Match: A0A6B1G602_9ACTN (DNA helicase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A6B1G602_9ACTN)

HSP 1 Score: 207 bits (526), Expect = 8.740e-59
Identity = 123/281 (43.77%), Postives = 165/281 (58.72%), Query Frame = 1
Query:   25 LLLKDDFTPETLRTQIGKLAQGGGR---LSASDETEVRGRLYPELVIVDRSKPSDGKLMFDPPSATSSEALAVLDRDQERLARHIGDGYRVIKGVAGSGKSLVITFRARFLAENFPHKNYLVACYNRVLADSLKIQLADYPNIRVATVDEVASEVCWKEGIRVSGRGNEKF---REQQAAALRVMRSRPIAKLLVDAVLVDEAQDLDDVGTELAHSFLQPGADHFVIALDAAQSIYRRQSRWTPEGVTGRGRTKLLRLNYRNTREILEAAYNFLAAGTVAE 849
            LL +DDF    LR  +      GGR   L  +++++ R  + PE+VI  R+       MF  P     E +  LDR+QER ARH+G GYRVI+GVAGSGK+LV+T RAR++A NFP    L+ C+NR LA +L+ Q+AD  N+ V ++D++A  V  +  +         F   R++  A LR +      +   D VLVDEAQDL   G +LA   L+PG DHFVIALD AQ IYR   RW P G+T +GRTK+  +NYRNT +ILE A   LA G   +
Sbjct:  167 LLTRDDFESPALRLALQSAI--GGRILPLGTAEQSQTRAVIKPEIVISGRAP-----AMFREPDPAGEEIIRTLDREQERTARHLGPGYRVIRGVAGSGKTLVLTHRARYIARNFPDWRILLMCFNRPLASALRAQVADCANVYVRSIDQLAHRVLSQADLVGDSEAKPDFEQRRQEATAHLRGLTDAQRRERGYDLVLVDEAQDLGADGLDLAWQSLKPGRDHFVIALDGAQRIYRGGRRWNPPGMTAQGRTKVFDVNYRNTDKILEEA--LLALGDAGQ 438          
BLAST of mRNA_M-pyrifera_M_contig84405.19680.1 vs. uniprot
Match: A0A6G2JUK3_9ACTN (DNA helicase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A6G2JUK3_9ACTN)

HSP 1 Score: 207 bits (527), Expect = 4.450e-58
Identity = 125/280 (44.64%), Postives = 167/280 (59.64%), Query Frame = 1
Query:   25 LLLKDDFTPETLRTQIGKLAQGGG--RLSASDETEVRGRLYPELVIVDRSKPSDGKLMFDPPSATSSEALAVLDRDQERLARHIGDGYRVIKGVAGSGKSLVITFRARFLAENFPHKNYLVACYNRVLADSLKIQLADYPNIRVATVDEVASEVCWKEGIRVSGRGNEKF---REQQAAALRVMRSRPIAKLLVDAVLVDEAQDLDDVGTELAHSFLQPGADHFVIALDAAQSIYRRQSRWTPEGVTGRGRTKLLRLNYRNTREILEAAYNFLAAGTVAE 849
            LL +DDF PE LR  + + A GG    L ++ +++ R  + PE+VI  R+       MF  P +   E +  LDR+QER ARH+G GYRVI+GVAGSGK+LV+T RAR +A+NF     L+ C+NR LA +L+ Q+AD  N+ V ++D++A  V    G+         F   R +  A LR +      +   D VLVDEAQDL   G +LA   L+PG DHFVIALD AQ IYR   RW P G+T +GRTK+  +NYRNT +ILE A   LA G   +
Sbjct:  300 LLTRDDFEPEALRLAL-QSAIGGQILPLGSAQQSQTRAVIKPEIVISGRTP-----AMFREPDSAGEEIIRTLDREQERTARHLGPGYRVIRGVAGSGKTLVLTHRARHIAQNFGDWRILLMCFNRPLASALRAQVADCANVWVRSIDQLARRVLELAGLVGDSNAKPDFEQRRREATAHLRGLTDAQRHERGYDLVLVDEAQDLGADGLDLAWESLKPGRDHFVIALDGAQRIYRGGRRWNPPGMTAQGRTKVFDVNYRNTDKILEEA--LLALGDAGQ 571          
BLAST of mRNA_M-pyrifera_M_contig84405.19680.1 vs. uniprot
Match: A0A7K2B2T0_9ACTN (DNA helicase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2B2T0_9ACTN)

HSP 1 Score: 198 bits (504), Expect = 9.620e-56
Identity = 115/280 (41.07%), Postives = 160/280 (57.14%), Query Frame = 1
Query:   10 GSPEKLLLKDDFTPETLRTQI-GKLAQGGGRLSASDETEVRGRLYPELVI--VDRSKPSDGKLMFDPPSATSSEALAVLDRDQERLARHIGDGYRVIKGVAGSGKSLVITFRARFLAENFPHKNYLVACYNRVLADSLKIQLADYPNIRVATVDEVASEVCWKEGIRVSGRGNEKFREQQAAALRVMRSRPIAKLLVDAVLVDEAQDLDDVGTELAHSFLQPGADHFVIALDAAQSIYRRQSRWTPEGVTGRGRTKLLRLNYRNTREILEAAYNFLAAGT 840
              P ++L ++DFT + L   + G +      L   DET+ R  + PE++I     S  +    +F PP  T  + +  LDR QERLARH+G GYR+I+GVAGSGK+L++T RA+   ++FP    L+ C+NR L+ +L  ++    N+   TVD +A+ +    G       N  F  +++ AL V       K   D VLVDEAQDL + G ELA + L+P  DHFVIALD+AQ +YRR+  W P   T RGR  +LR NYRNTREIL+ A   L   T
Sbjct:  146 SEPLRMLTEEDFTRDGLEQALHGHMGTRSSSLDPVDETKARATVKPEIIIGGSPESTRAAQAPLFGPPDDT--DQVRALDRRQERLARHLGGGYRLIRGVAGSGKTLILTHRAKHFGKHFPDWRILLLCFNRALSVALTAEMKRVDNVHTKTVDGLAAALLKDAGRPAPFERNPDFEARRSDALEVANRLDAGKRF-DMVLVDEAQDLGESGLELAWAMLKPDRDHFVIALDSAQKVYRRRMTWNPPSTTARGRATVLRTNYRNTREILDPALAILRLST 422          
BLAST of mRNA_M-pyrifera_M_contig84405.19680.1 vs. uniprot
Match: A0A6N9A033_9ACTN (DNA helicase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N9A033_9ACTN)

HSP 1 Score: 179 bits (453), Expect = 2.790e-48
Identity = 115/301 (38.21%), Postives = 166/301 (55.15%), Query Frame = 1
Query:    4 GFGSPEKLLLKDDFT----PETLRTQIGKLAQGGGRLSASDETEVRGRLYPELVIVDRSKPSDGKL-----MFDPPSATSSEALAVLDRDQERLARHIGDGYRVIKGVAGSGKSLVITFRARFLAENFPHKNYLVACYNRVLADSLKIQLADYPNIRVATVDEVASEVCWKEGIRVSGRGNEKFREQQAAALRVMRSRPIAKLLVDAVLVDEAQDLDDVGTELAHSFLQP---------------GADHFVIALDAAQSIYRRQSR-WTPEGVTGRGRTKLLRLNYRNTREILEAAYNFLA 831
            G G+   LLL+ D      P  +R   G   +G   L+  ++  VR  + P +VI  + + S+ +      +F  P     + + V+DR QERLA H+G GYR+++GVAGSGK+LV+T RARFL E FP+   LV CYNRVLA+ L+  +      +V  +D +A E+  K   + SG     F   +  A+      P ++   D VLVDEAQD D  G  LA+  L+                GA H V+ALD+AQ++Y+R+S  W P  +T +GRT++ R NYRNTR+IL+ A+ FLA
Sbjct:  132 GLGNGVDLLLRSDLADRGLPLAMRRIFGLRREGS--LNDREQQLVRAAINPRVVINLKLEGSEAEQAVKIPLFHEPEIAPEDIIRVMDRKQERLAEHMGWGYRMLRGVAGSGKTLVLTHRARFLRERFPNYRILVLCYNRVLANGLRGMIGKSNGTKVIHIDSLAFELAGK---KPSGNTFPDFPRLRLKAIEAAERLPDSRRY-DVVLVDEAQDFDHGGLGLAYHMLKKNRRNLSASQQDLTSAGAGHLVLALDSAQNLYQRRSMTWNPPNITAQGRTEIFRSNYRNTRQILDLAWKFLA 426          
BLAST of mRNA_M-pyrifera_M_contig84405.19680.1 vs. uniprot
Match: A0A6B0ZBE9_9ACTN (DNA helicase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B0ZBE9_9ACTN)

HSP 1 Score: 173 bits (439), Expect = 2.630e-46
Identity = 112/289 (38.75%), Postives = 160/289 (55.36%), Query Frame = 1
Query:   25 LLLKDDFTPETLRTQIGKLA--QGGGRLSASDETEVRGRLYPELVIVDRSKPSDGKLMFDPPSATSSEALAVLDRDQERLARHIGDGYRVIKGVAGSGKSLVITFRARFLAENFPHKNYLVACYNRVLADSLKIQLADYPNIRVATVDEVASEVCWKEGIRVSGRGNEKFREQQAAALRVMRSRPIAKLLVDAVLVDEAQDLDDVGTELAHSFLQPGA----------DHFVIALDAAQSIYRRQ-SRWTPEGV-------TGRGRTKLLRLNYRNTREILEAAYNFLA 831
            +L + DF   +L   + ++   +    L+  +E   R  + PE+V+      S+   +F  P   S + + V+DR+QER+A H+GDGYRV++GVAGSGK+LV+  RAR+L +++P    LV CYNRVLA +L   +     + V  VD +A  +  ++G R    G   F      A +  +  P ++   D VLVDEAQDLD     LA+S L+P            D+FV+A D AQ++Y R  +RW P GV       T RGRT + R NYRNTREILE A +FLA
Sbjct:  138 ILRRSDFAEGSLEGALRRILGDEQTRPLNEREEKRARAVVNPEIVLPQSG--SESLPLFQDPEIPSEDVIRVMDREQERVAEHLGDGYRVLRGVAGSGKTLVLAHRARYLHKHWPTLRILVLCYNRVLAHALSTMVTPGDRLEVTNVDRLAYHLAGRDGHR----GPPDFEALVLKAEKQAKRLPDSERY-DVVLVDEAQDLDFPRLNLAYSMLKPDRLKPDLARPDRDNFVMAYDVAQNVYSRGGARWNPPGVDAQGRPRTARGRTTVFRRNYRNTREILEFAMHFLA 419          
BLAST of mRNA_M-pyrifera_M_contig84405.19680.1 vs. uniprot
Match: A0A6L7XCG1_9ACTN (DNA helicase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6L7XCG1_9ACTN)

HSP 1 Score: 171 bits (433), Expect = 1.960e-45
Identity = 117/292 (40.07%), Postives = 158/292 (54.11%), Query Frame = 1
Query:   25 LLLKDDFTPETLRTQIGKLAQGGGR---LSASDETEVRGRLYPELVIVDRSKPSDGKL-MFDPPSATSSEALAVLDRDQERLARHIGDGYRVIKGVAGSGKSLVITFRARFLAENFPHKNYLVACYNRVLADSLKIQLADYPNIRVATVDEVASEVC-WKEGIRVSGRGNEKFREQQAAALRVMRSRPIAKLLVDAVLVDEAQDLDDVGTELAHSFL----------QPGADHFVIALDAAQSIYRRQ-SRWTPEGV-------TGRGRTKLLRLNYRNTREILEAAYNFLA 831
            +L + D + + L   + ++  GG R   LS  +E   R  + PE+++    +P    L +F  P     + + V+DR QER+A H+GDGYRV++GVAGSGK+LV+  RAR L   FP    LV CYNRVLA++L+  +     + V  +D +A  +  W      S RG   F      A +  R  P ++   DAVLVDEAQD D     LA+S L          Q   D FV+A D AQ++YRR  +RW P GV       T RGR+ + R NYRNTREILE A NFLA
Sbjct:  139 ILTRSDLSRDQLEGALRRVL-GGVRIQPLSEREEKRARAVVNPEIIL---PQPQSETLPLFQDPETRPEDVIRVMDRHQERVAEHLGDGYRVLRGVAGSGKTLVLAHRARHLHRTFPKWRILVVCYNRVLANALEAMVDPDERLEVTNIDRLAYRLAGWS-----SRRGKPDFDSLVLEAEKKARRLPDSERF-DAVLVDEAQDFDHPRLTLAYSMLKSDRLRPDPVQLDRDSFVMAYDVAQNVYRRGGARWNPPGVDAQGRSRTARGRSTVFRKNYRNTREILEFAMNFLA 420          
BLAST of mRNA_M-pyrifera_M_contig84405.19680.1 vs. uniprot
Match: A0A1F7LVK1_9BACT (DNA helicase n=1 Tax=Candidatus Rokubacteria bacterium GWC2_70_16 TaxID=1802097 RepID=A0A1F7LVK1_9BACT)

HSP 1 Score: 142 bits (357), Expect = 8.750e-35
Identity = 101/284 (35.56%), Postives = 145/284 (51.06%), Query Frame = 1
Query:   16 PEKLLLKDDFTPETLRTQIGKLAQGGGR----LSASDETEVRGRLYPELVIVDRSKPSDGKLMFDPPSATSSEALAVLDRDQERLARHIGDGYRVIKGVAGSGKSLVITFRARFLAENFPHKNYLVACYNRVLADSLKIQLADYPNIRVATVDEVASEVCWKEGI---RVSGRGNEK----FREQQAAALRVMRSRPIAKLLVDAVLVDEAQDLDDVGTELAHSFLQPGADHFVIALDAAQSIYRRQSRWTPEGV--TGRGRTKLLRLNYRNTREILEAAYNFL 828
            P +++  DD   + L  ++ +L     +    L  ++  E+R  L+PE+ I        G    D      ++ L V+DR+QERLAR +GD +R+++GVAGSGK++ +  RAR+L         LV C+NRVLADSL+  +   P I VAT            G+   R +GRG E      R      L       + +    A+LVDE QD  D    +    L P  +   IALD++Q+IYRR+  W   GV   GR RT++LR+NYRNTR IL AAY  +
Sbjct:  155 PGRVMTADDLAQKALLPRLKELLPDWSKRLPPLDPAEVDEIRAVLHPEVRI--------GWGYSD------ADILCVMDREQERLARSLGDDHRLLRGVAGSGKTITLICRARYLRVAHAEWRVLVLCFNRVLADSLRDAIGGDPGIEVATFHGWCHAQLQHAGLPPPRPAGRGQEWDEYFVRVVPGFLLSAYDDGRLPQGTYQAILVDEGQDFADDWYRVLLRALDPTTNSLFIALDSSQNIYRRKVSWREIGVQIVGRTRTRVLRVNYRNTRAILSAAYRLI 424          
BLAST of mRNA_M-pyrifera_M_contig84405.19680.1 vs. uniprot
Match: A0A7X7DTZ3_9BACT (DNA helicase n=1 Tax=Synergistaceae bacterium TaxID=2053624 RepID=A0A7X7DTZ3_9BACT)

HSP 1 Score: 137 bits (345), Expect = 4.960e-33
Identity = 98/254 (38.58%), Postives = 131/254 (51.57%), Query Frame = 1
Query:   91 GGRLSASDETEVRGRLYPELVIVDRSKPSDGKLMFDPPSATSSEALAVLDRDQERLARHIGDGYRVIKGVAGSGKSLVITFRARFLAENFPHKNYLVACYNRVLADSLKIQLADYPNIRVATVDEVASEVCWKEGIRVSGRGNEKFREQQAAALRVMRSRPIAKLLVDAVLVDEAQDLDDVGTELAHSFL-QPGADHFVIALDAAQSIYR-RQSRWTPEGVTGRGRTKLLRLNYRNTREILEAAYNFLAAGTVA 846
            GG L+ S    +R  ++PE++I            F+    TS+  L VLD DQER AR+I  G+R+I GVAGSGK+++   RA+ LA+  P+   L+ CYN+ LA  LK  L +YP+I V     +A  + W  G   S   NE F E+    L+ +    +     DA+LVDEAQD D        S L  P     +I  D  QS+Y+ R+  W   GV   GRTK LR NYRN+REI   A  F   G  A
Sbjct:  191 GGGLTPSQVDALRATIHPEVIIE----------KFET-VRTSNIELKVLDLDQEREARNIASGHRLIWGVAGSGKTVLAISRAKLLAQENPNARILMTCYNKTLAAYLKKTLENYPSIEVMHFHSLAKRI-WNCGFS-SKESNEVFGER---LLKCLSKGAVVNTKYDAILVDEAQDFDPAWFRCLLSLLCDPDDGDLLIVGDGMQSLYKSRKITWKSLGVQAGGRTKYLRRNYRNSREIASLAAAFSVFGNTA 428          
BLAST of mRNA_M-pyrifera_M_contig84405.19680.1 vs. uniprot
Match: A0A2V6Y5B5_9BACT (DNA helicase n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6Y5B5_9BACT)

HSP 1 Score: 136 bits (343), Expect = 7.520e-33
Identity = 95/282 (33.69%), Postives = 147/282 (52.13%), Query Frame = 1
Query:   16 PEKLLLKDDFTPETLRTQIGKLAQGGG----RLSASDETEVRGRLYPELVIVDRSKPSDGKLMFDPPSATSSEALAVLDRDQERLARHIGDGYRVIKGVAGSGKSLVITFRARFLAENFPHKNYLVACYNRVLADSLKIQLADYPNIRVATVDEVASEVCWKEGIRVS-----GRGNEKFREQQAAALRVMRSRPIAKL-LVDAVLVDEAQDLDDVGTELAHSFLQPGADHFVIALDAAQSIYRRQSRWTPEGVTGRGRTKLLRLNYRNTREILEAAYNFLA 831
            P  +L  DD T E L  ++ +L  G      RLS +   E+R  LYPE+ +        G    D      ++ L V+DR+QE LA+ +GDG+R+++GVAGSGK++V+  RAR L E  P    LV C+NRVLA+ L   +     ++  T     S    +  + +      G+   ++ E+  A L    +   A+     A+LVDE QD  +    +    L P ++   +A+D++Q+IY+R+  W   GV   G T++LR+NYRNTR IL AAY  ++
Sbjct:  155 PGLVLTADDLTAERLLPRLRRLVPGWAAHAPRLSPAQVDEIRAVLYPEIRV--------GWAYDD------AQLLEVMDREQECLAKSMGDGHRLVRGVAGSGKTIVLACRARHLRELHPDWRILVLCFNRVLAEHLAGTVGADDRLQALTFHAWCSRELRRAKVAMPPAPERGQAWHEYWERVPALLLDAYATGQARTGTYQAILVDEGQDFANDWYRVILKALDPASNSLFVAVDSSQNIYQRKISWRELGVQIVGHTRVLRVNYRNTRPILNAAYRVIS 422          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84405.19680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6N9ENH8_9ACTN3.670e-6144.40DNA helicase n=1 Tax=Acidimicrobiaceae bacterium T... [more]
A0A6B1G602_9ACTN8.740e-5943.77DNA helicase n=1 Tax=Acidimicrobiales bacterium Ta... [more]
A0A6G2JUK3_9ACTN4.450e-5844.64DNA helicase n=1 Tax=Acidimicrobiales bacterium Ta... [more]
A0A7K2B2T0_9ACTN9.620e-5641.07DNA helicase n=1 Tax=Acidimicrobiia bacterium TaxI... [more]
A0A6N9A033_9ACTN2.790e-4838.21DNA helicase n=1 Tax=Acidimicrobiia bacterium TaxI... [more]
A0A6B0ZBE9_9ACTN2.630e-4638.75DNA helicase n=1 Tax=Acidimicrobiaceae bacterium T... [more]
A0A6L7XCG1_9ACTN1.960e-4540.07DNA helicase n=2 Tax=Acidimicrobiaceae bacterium T... [more]
A0A1F7LVK1_9BACT8.750e-3535.56DNA helicase n=1 Tax=Candidatus Rokubacteria bacte... [more]
A0A7X7DTZ3_9BACT4.960e-3338.58DNA helicase n=1 Tax=Synergistaceae bacterium TaxI... [more]
A0A2V6Y5B5_9BACT7.520e-3333.69DNA helicase n=1 Tax=Candidatus Rokubacteria bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84405contigM-pyrifera_M_contig84405:6..863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score134.0
Seed ortholog evalue1.1e-28
Seed eggNOG ortholog1286631.X805_07430
Hectar predicted targeting categoryother localisation
EggNOG free text desc.UvrD-like helicase C-terminal domain
EggNOG OGs1KMZ5@119065,1MWW6@1224,2VM7D@28216,COG0210@1,COG0210@2
COG Functional cat.L
Best tax levelunclassified Burkholderiales
Best eggNOG OGNA|NA|NA
Exons1
Model size858
Cds size858
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816751.3224502-CDS-M-pyrifera_M_contig84405:5..8631622816751.3224502-CDS-M-pyrifera_M_contig84405:5..863Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84405 6..863 -
1692278156.8428702-CDS-M-pyrifera_M_contig84405:5..8631692278156.8428702-CDS-M-pyrifera_M_contig84405:5..863Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84405 6..863 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84405.19680.1prot_M-pyrifera_M_contig84405.19680.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84405 6..863 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84405.19680.1

>prot_M-pyrifera_M_contig84405.19680.1 ID=prot_M-pyrifera_M_contig84405.19680.1|Name=mRNA_M-pyrifera_M_contig84405.19680.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=286bp
MGFGSPEKLLLKDDFTPETLRTQIGKLAQGGGRLSASDETEVRGRLYPEL
VIVDRSKPSDGKLMFDPPSATSSEALAVLDRDQERLARHIGDGYRVIKGV
AGSGKSLVITFRARFLAENFPHKNYLVACYNRVLADSLKIQLADYPNIRV
ATVDEVASEVCWKEGIRVSGRGNEKFREQQAAALRVMRSRPIAKLLVDAV
LVDEAQDLDDVGTELAHSFLQPGADHFVIALDAAQSIYRRQSRWTPEGVT
GRGRTKLLRLNYRNTREILEAAYNFLAAGTVAEDVE
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mRNA from alignment at M-pyrifera_M_contig84405:6..863-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84405.19680.1 ID=mRNA_M-pyrifera_M_contig84405.19680.1|Name=mRNA_M-pyrifera_M_contig84405.19680.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig84405:6..863- (Macrocystis pyrifera P11B4 male)
ATGGGCTTTGGTTCGCCTGAGAAATTGCTCCTGAAGGATGACTTCACGCC TGAAACGCTTCGAACCCAAATCGGGAAGCTGGCTCAAGGTGGAGGTCGCC TCTCAGCCAGCGACGAGACCGAGGTACGGGGCAGGCTGTATCCCGAGCTC GTGATCGTCGATCGTTCCAAGCCGTCAGACGGCAAGCTGATGTTCGATCC GCCCTCGGCAACCTCAAGCGAAGCGCTCGCAGTGTTGGACCGTGATCAGG AGCGGCTCGCGCGTCACATCGGTGATGGCTACCGCGTCATCAAAGGGGTG GCCGGCTCCGGCAAGTCGTTGGTCATCACGTTCCGCGCTCGCTTCCTCGC CGAAAACTTCCCGCACAAGAACTATCTGGTGGCGTGCTACAACCGAGTTC TCGCCGACTCGCTGAAGATTCAGCTTGCTGACTATCCGAATATTCGGGTG GCAACAGTCGATGAGGTGGCATCCGAAGTGTGCTGGAAAGAGGGCATACG TGTGAGCGGAAGGGGGAACGAGAAGTTCCGCGAACAGCAAGCCGCAGCCC TCAGAGTGATGCGATCCCGACCGATTGCCAAGCTGCTGGTCGATGCGGTG CTCGTCGATGAGGCCCAGGACCTCGACGATGTTGGCACCGAACTCGCGCA CTCGTTTCTGCAGCCGGGCGCCGACCACTTCGTGATTGCTTTGGACGCGG CCCAGAGCATCTACCGGCGCCAGTCCCGCTGGACGCCGGAAGGTGTCACG GGTCGAGGCAGAACGAAACTCCTTCGGCTCAACTACCGAAACACCCGTGA GATCCTGGAGGCCGCCTACAACTTCCTTGCGGCCGGGACTGTCGCTGAGG ATGTTGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84405:6..863-

>mRNA_M-pyrifera_M_contig84405.19680.1 ID=mRNA_M-pyrifera_M_contig84405.19680.1|Name=mRNA_M-pyrifera_M_contig84405.19680.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1716bp|location=Sequence derived from alignment at M-pyrifera_M_contig84405:6..863- (Macrocystis pyrifera P11B4 male)
ATGGGCTTTGGTTCGCCTGAGAAATTGCTCCTGAAGGATGACTTCACGCC
TGAAACGCTTCGAACCCAAATCGGGAAGCTGGCTCAAGGTGGAGGTCGCC
TCTCAGCCAGCGACGAGACCGAGGTACGGGGCAGGCTGTATCCCGAGCTC
GTGATCGTCGATCGTTCCAAGCCGTCAGACGGCAAGCTGATGTTCGATCC
GCCCTCGGCAACCTCAAGCGAAGCGCTCGCAGTGTTGGACCGTGATCAGG
AGCGGCTCGCGCGTCACATCGGTGATGGCTACCGCGTCATCAAAGGGGTG
GCCGGCTCCGGCAAGTCGTTGGTCATCACGTTCCGCGCTCGCTTCCTCGC
CGAAAACTTCCCGCACAAGAACTATCTGGTGGCGTGCTACAACCGAGTTC
TCGCCGACTCGCTGAAGATTCAGCTTGCTGACTATCCGAATATTCGGGTG
GCAACAGTCGATGAGGTGGCATCCGAAGTGTGCTGGAAAGAGGGCATACG
TGTGAGCGGAAGGGGGAACGAGAAGTTCCGCGAACAGCAAGCCGCAGCCC
TCAGAGTGATGCGATCCCGACCGATTGCCAAGCTGCTGGTCGATGCGGTG
CTCGTCGATGAGGCCCAGGACCTCGACGATGTTGGCACCGAACTCGCGCA
CTCGTTTCTGCAGCCGGGCGCCGACCACTTCGTGATTGCTTTGGACGCGG
CCCAGAGCATCTACCGGCGCCAGTCCCGCTGGACGCCGGAAGGTGTCACG
GGTCGAGGCAGAACGAAACTCCTTCGGCTCAACTACCGAAACACCCGTGA
GATCCTGGAGGCCGCCTACAACTTCCTTGCGGCCGGGACTGTCGCTGAGG
ATGTTGAGATGGGCTTTGGTTCGCCTGAGAAATTGCTCCTGAAGGATGAC
TTCACGCCTGAAACGCTTCGAACCCAAATCGGGAAGCTGGCTCAAGGTGG
AGGTCGCCTCTCAGCCAGCGACGAGACCGAGGTACGGGGCAGGCTGTATC
CCGAGCTCGTGATCGTCGATCGTTCCAAGCCGTCAGACGGCAAGCTGATG
TTCGATCCGCCCTCGGCAACCTCAAGCGAAGCGCTCGCAGTGTTGGACCG
TGATCAGGAGCGGCTCGCGCGTCACATCGGTGATGGCTACCGCGTCATCA
AAGGGGTGGCCGGCTCCGGCAAGTCGTTGGTCATCACGTTCCGCGCTCGC
TTCCTCGCCGAAAACTTCCCGCACAAGAACTATCTGGTGGCGTGCTACAA
CCGAGTTCTCGCCGACTCGCTGAAGATTCAGCTTGCTGACTATCCGAATA
TTCGGGTGGCAACAGTCGATGAGGTGGCATCCGAAGTGTGCTGGAAAGAG
GGCATACGTGTGAGCGGAAGGGGGAACGAGAAGTTCCGCGAACAGCAAGC
CGCAGCCCTCAGAGTGATGCGATCCCGACCGATTGCCAAGCTGCTGGTCG
ATGCGGTGCTCGTCGATGAGGCCCAGGACCTCGACGATGTTGGCACCGAA
CTCGCGCACTCGTTTCTGCAGCCGGGCGCCGACCACTTCGTGATTGCTTT
GGACGCGGCCCAGAGCATCTACCGGCGCCAGTCCCGCTGGACGCCGGAAG
GTGTCACGGGTCGAGGCAGAACGAAACTCCTTCGGCTCAACTACCGAAAC
ACCCGTGAGATCCTGGAGGCCGCCTACAACTTCCTTGCGGCCGGGACTGT
CGCTGAGGATGTTGAG
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