mRNA_M-pyrifera_M_contig8439.19679.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8439.19679.1
Unique NamemRNA_M-pyrifera_M_contig8439.19679.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8439.19679.1 vs. uniprot
Match: A0A6H5JAK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAK7_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 4.960e-35
Identity = 61/97 (62.89%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:    1 QVQVGARGSSNLRYAGPVDCTFQLMKADGIGALFRGTSATLARDTPSLGIYFASYEGIKGWLERRWGLGEHASSFGAGGFAGAASWLSIYPLDVVKS 291
            Q+QVGA GSSNL+Y GPVDC   +    G+  LFRG+ AT  RDTP++G+YFASYE +K  LE RWG GE ASSF AGG AGA SW   YP DVVKS
Sbjct:  175 QIQVGAPGSSNLKYRGPVDCAMSIFNTQGVRGLFRGSPATAIRDTPAMGLYFASYEAVKDRLESRWGFGEQASSFWAGGLAGALSWFVSYPFDVVKS 271
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BLAST of mRNA_M-pyrifera_M_contig8439.19679.1 vs. uniprot
Match: UPI00109F0517 (solute carrier family 25 member 45 isoform X3 n=1 Tax=Grammomys surdaster TaxID=491861 RepID=UPI00109F0517)

HSP 1 Score: 81.6 bits (200), Expect = 3.050e-17
Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:   22 GSSNLRYAGPVDCTFQLMKADGIGALFRGTSATLARDTPSLGIYFASYEGIKGWLERRWGLGEHASSFGAGGFAGAASWLSIYPLDVVKS 291
            GSS  RY GPV C   +++ +G   LFRG+ A + RDTP+LG+YF +YEG+             A+   AGGFAG ASW++  P DV+KS
Sbjct:   39 GSSTPRYRGPVHCAASILREEGPQGLFRGSWALVLRDTPTLGMYFVTYEGLCRQYTPEGQNPSSATVLVAGGFAGIASWITATPFDVIKS 128
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BLAST of mRNA_M-pyrifera_M_contig8439.19679.1 vs. uniprot
Match: A0A6P7D9D9_SHEEP (solute carrier family 25 member 45 isoform X3 n=3 Tax=Pecora TaxID=35500 RepID=A0A6P7D9D9_SHEEP)

HSP 1 Score: 82.4 bits (202), Expect = 3.180e-17
Identity = 45/94 (47.87%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:   22 GSSNLRYAGPVDCTFQLMKADGIGALFRGTSATLARDTPSLGIYFASYEGIKGWLERRWGLGEHASSFG----AGGFAGAASWLSIYPLDVVKS 291
            GS   +Y GPV C   + +A+G   LFRG  A   RDTP+LGIYF +YE    WL R++ L +   S G    AGGFAG  SW++  PLDV+KS
Sbjct:   76 GSPPPQYRGPVHCAASIFQAEGPRGLFRGAWALTLRDTPTLGIYFVTYE----WLCRQFTLDDQTPSSGTVLVAGGFAGITSWVAATPLDVIKS 165
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BLAST of mRNA_M-pyrifera_M_contig8439.19679.1 vs. uniprot
Match: UPI001442F4FC (congested-like trachea protein isoform X1 n=3 Tax=Halictidae TaxID=77572 RepID=UPI001442F4FC)

HSP 1 Score: 83.2 bits (204), Expect = 4.600e-17
Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:   19 RGSSNLRYAGPVDCTFQLMKADGIGALFRGTSATLARDTPSLGIYFASYEGIKGWLERRWG-LGEHASSFGAGGFAGAASWLSIYPLDVVKS 291
            +G +  +Y GP+DC  QL K  GI ++++GT ATL RD P+ G+YFA+YE +K WL  + G LG   + F AGG AG A+W+   P DV+KS
Sbjct:  139 QGDAKPKYKGPIDCVKQLYKEGGIRSIYKGTCATLLRDIPASGMYFATYECLKNWLTPKDGSLGLLPTIF-AGGCAGIANWIVGMPPDVLKS 229
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BLAST of mRNA_M-pyrifera_M_contig8439.19679.1 vs. uniprot
Match: UPI0006D90F00 (solute carrier family 25 member 45 isoform X2 n=2 Tax=Bos mutus TaxID=72004 RepID=UPI0006D90F00)

HSP 1 Score: 82.4 bits (202), Expect = 5.920e-17
Identity = 46/94 (48.94%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:   22 GSSNLRYAGPVDCTFQLMKADGIGALFRGTSATLARDTPSLGIYFASYEGIKGWLERRWGLGEHASSFG----AGGFAGAASWLSIYPLDVVKS 291
            GS   RY GPV C   + +A+G   LFRG  A   RDTP+LGIYF +YE    WL R++ L     S G    AGGFAG  SW++  PLDV+KS
Sbjct:  114 GSPPPRYRGPVHCAASIFQAEGPRGLFRGAWALTLRDTPTLGIYFVTYE----WLCRQFTLDGQTPSSGTVLVAGGFAGITSWVAATPLDVIKS 203
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BLAST of mRNA_M-pyrifera_M_contig8439.19679.1 vs. uniprot
Match: A0A8D2H6X4_UROPR (Solute carrier family 25 member 45 n=2 Tax=Urocitellus parryii TaxID=9999 RepID=A0A8D2H6X4_UROPR)

HSP 1 Score: 82.4 bits (202), Expect = 9.500e-17
Identity = 43/90 (47.78%), Postives = 53/90 (58.89%), Query Frame = 1 
Query:   22 GSSNLRYAGPVDCTFQLMKADGIGALFRGTSATLARDTPSLGIYFASYEGIKGWLERRWGLGEHASSFGAGGFAGAASWLSIYPLDVVKS 291
            GS   RY GPV CT  + + +G   LFRG  A + RDTPSLGIYF +YEG+             A+   AGGFAG ASW++  P DV+KS
Sbjct:  138 GSPRPRYQGPVHCTATIFREEGPRGLFRGAWALMLRDTPSLGIYFVTYEGLCRQYTPDGQTPSSATVLVAGGFAGIASWVAATPFDVIKS 227
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BLAST of mRNA_M-pyrifera_M_contig8439.19679.1 vs. uniprot
Match: W5PYR1_SHEEP (Solute carrier family 25 member 45 n=3 Tax=Artiodactyla TaxID=91561 RepID=W5PYR1_SHEEP)

HSP 1 Score: 80.9 bits (198), Expect = 1.490e-16
Identity = 45/94 (47.87%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:   22 GSSNLRYAGPVDCTFQLMKADGIGALFRGTSATLARDTPSLGIYFASYEGIKGWLERRWGLGEHASSFG----AGGFAGAASWLSIYPLDVVKS 291
            GS   +Y GPV C   + +A+G   LFRG  A   RDTP+LGIYF +YE    WL R++ L     S G    AGGFAG  SW++  PLDV+KS
Sbjct:  141 GSPPPQYRGPVHCAASIFQAEGPRGLFRGAWALTLRDTPTLGIYFVTYE----WLCRQFTLDGQTPSSGTVLVAGGFAGITSWVAATPLDVIKS 230
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BLAST of mRNA_M-pyrifera_M_contig8439.19679.1 vs. uniprot
Match: A0A8C2RT89_CAPHI (Solute carrier family 25 member 45 n=1 Tax=Capra hircus TaxID=9925 RepID=A0A8C2RT89_CAPHI)

HSP 1 Score: 80.9 bits (198), Expect = 1.540e-16
Identity = 45/94 (47.87%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:   22 GSSNLRYAGPVDCTFQLMKADGIGALFRGTSATLARDTPSLGIYFASYEGIKGWLERRWGLGEHASSFG----AGGFAGAASWLSIYPLDVVKS 291
            GS   +Y GPV C   + +A+G   LFRG  A   RDTP+LGIYF +YE    WL R++ L     S G    AGGFAG  SW++  PLDV+KS
Sbjct:   89 GSPPPQYRGPVHCAASIFQAEGPRGLFRGAWALTLRDTPTLGIYFVTYE----WLCRQFTLDGQTPSSGTVLVAGGFAGITSWVAATPLDVIKS 178
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BLAST of mRNA_M-pyrifera_M_contig8439.19679.1 vs. uniprot
Match: A0A8C2XZ68_CAPHI (Solute carrier family 25 member 45 n=2 Tax=Capra hircus TaxID=9925 RepID=A0A8C2XZ68_CAPHI)

HSP 1 Score: 80.9 bits (198), Expect = 2.270e-16
Identity = 45/94 (47.87%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:   22 GSSNLRYAGPVDCTFQLMKADGIGALFRGTSATLARDTPSLGIYFASYEGIKGWLERRWGLGEHASSFG----AGGFAGAASWLSIYPLDVVKS 291
            GS   +Y GPV C   + +A+G   LFRG  A   RDTP+LGIYF +YE    WL R++ L     S G    AGGFAG  SW++  PLDV+KS
Sbjct:  114 GSPPPQYRGPVHCAASIFQAEGPRGLFRGAWALTLRDTPTLGIYFVTYE----WLCRQFTLDGQTPSSGTVLVAGGFAGITSWVAATPLDVIKS 203
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BLAST of mRNA_M-pyrifera_M_contig8439.19679.1 vs. uniprot
Match: A0A3S3P6H1_9ACAR (Mitochondrial carnitine/acylcarnitine carrier protein-like protein n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3P6H1_9ACAR)

HSP 1 Score: 81.3 bits (199), Expect = 2.510e-16
Identity = 40/93 (43.01%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:   22 GSSNLRYAGPVDCTFQLMKADGIGALFRGTSATLARDTPSLGIYFASYEGIKGWLERRWGLGEHASSFG---AGGFAGAASWLSIYPLDVVKS 291
            GSS+ +Y G  DCTF+++K +G+  +F+GT+ T  R+ P+ G+YF +YE +K  L +     EH SS     AGGFAG A W    P D++KS
Sbjct:  143 GSSHRKYKGAFDCTFKILKTEGLKGMFKGTAITSVREIPASGLYFLTYEWLKNHLSKE-SSKEHQSSIPVIVAGGFAGMAYWTLALPSDIIKS 234
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8439.19679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAK7_9PHAE4.960e-3562.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00109F05173.050e-1745.56solute carrier family 25 member 45 isoform X3 n=1 ... [more]
A0A6P7D9D9_SHEEP3.180e-1747.87solute carrier family 25 member 45 isoform X3 n=3 ... [more]
UPI001442F4FC4.600e-1747.83congested-like trachea protein isoform X1 n=3 Tax=... [more]
UPI0006D90F005.920e-1748.94solute carrier family 25 member 45 isoform X2 n=2 ... [more]
A0A8D2H6X4_UROPR9.500e-1747.78Solute carrier family 25 member 45 n=2 Tax=Urocite... [more]
W5PYR1_SHEEP1.490e-1647.87Solute carrier family 25 member 45 n=3 Tax=Artioda... [more]
A0A8C2RT89_CAPHI1.540e-1647.87Solute carrier family 25 member 45 n=1 Tax=Capra h... [more]
A0A8C2XZ68_CAPHI2.270e-1647.87Solute carrier family 25 member 45 n=2 Tax=Capra h... [more]
A0A3S3P6H1_9ACAR2.510e-1643.01Mitochondrial carnitine/acylcarnitine carrier prot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8439contigM-pyrifera_M_contig8439:89..379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score86.3
Seed ortholog evalue8.7e-15
Seed eggNOG ortholog132113.XP_003493905.1
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0002064,GO:0003382,GO:0003674,GO:0005215,GO:0005476,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0006844,GO:0006873,GO:0006875,GO:0007275,GO:0007424,GO:0008150,GO:0008324,GO:0008519,GO:0009653,GO:0009888,GO:0009987,GO:0010960,GO:0010961,GO:0015075,GO:0015095,GO:0015101,GO:0015226,GO:0015291,GO:0015297,GO:0015318,GO:0015651,GO:0015693,GO:0015695,GO:0015696,GO:0015697,GO:0015838,GO:0015879,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0019866,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030154,GO:0030855,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032989,GO:0034220,GO:0035002,GO:0042044,GO:0042045,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045016,GO:0046873,GO:0048468,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050801,GO:0051179,GO:0051181,GO:0051234,GO:0055065,GO:0055080,GO:0055082,GO:0055085,GO:0060429,GO:0060541,GO:0065007,GO:0065008,GO:0070633,GO:0070838,GO:0071702,GO:0071705,GO:0071840,GO:0072337,GO:0072349,GO:0072488,GO:0072503,GO:0072507,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:1902603,GO:1903830,GO:1990542,GO:1990616
EggNOG free text desc.Mitochondrial carrier protein
EggNOG OGs38BD7@33154,3BFY8@33208,3CZ26@33213,3SG1X@50557,41UX6@6656,46E2C@7399,KOG0758@1,KOG0758@2759
COG Functional cat.C
Best tax levelHymenoptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816751.2876794-CDS-M-pyrifera_M_contig8439:88..3791622816751.2876794-CDS-M-pyrifera_M_contig8439:88..379Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8439 89..379 -
1692278156.8284013-CDS-M-pyrifera_M_contig8439:88..3791692278156.8284013-CDS-M-pyrifera_M_contig8439:88..379Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8439 89..379 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8439.19679.1prot_M-pyrifera_M_contig8439.19679.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8439 89..379 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8439.19679.1

>prot_M-pyrifera_M_contig8439.19679.1 ID=prot_M-pyrifera_M_contig8439.19679.1|Name=mRNA_M-pyrifera_M_contig8439.19679.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
QVQVGARGSSNLRYAGPVDCTFQLMKADGIGALFRGTSATLARDTPSLGI
YFASYEGIKGWLERRWGLGEHASSFGAGGFAGAASWLSIYPLDVVKS
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mRNA from alignment at M-pyrifera_M_contig8439:89..379-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8439.19679.1 ID=mRNA_M-pyrifera_M_contig8439.19679.1|Name=mRNA_M-pyrifera_M_contig8439.19679.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=291bp|location=Sequence derived from alignment at M-pyrifera_M_contig8439:89..379- (Macrocystis pyrifera P11B4 male)
CAGGTCCAAGTAGGGGCTCGGGGGTCAAGCAATCTTCGCTACGCTGGCCC
GGTGGACTGCACCTTCCAACTCATGAAGGCTGACGGTATCGGCGCCCTGT
TTCGAGGCACCTCGGCGACACTGGCCAGAGATACGCCTTCCCTAGGCATC
TACTTCGCGTCCTATGAGGGCATCAAGGGGTGGCTGGAGCGGCGGTGGGG
CCTGGGAGAGCACGCATCCTCGTTCGGGGCCGGGGGCTTCGCGGGAGCGG
CAAGCTGGTTGTCGATCTATCCGCTTGACGTGGTCAAGTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8439:89..379-

>mRNA_M-pyrifera_M_contig8439.19679.1 ID=mRNA_M-pyrifera_M_contig8439.19679.1|Name=mRNA_M-pyrifera_M_contig8439.19679.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig8439:89..379- (Macrocystis pyrifera P11B4 male)
CAGGTCCAAGTAGGGGCTCGGGGGTCAAGCAATCTTCGCTACGCTGGCCC
GGTGGACTGCACCTTCCAACTCATGAAGGCTGACGGTATCGGCGCCCTGT
TTCGAGGCACCTCGGCGACACTGGCCAGAGATACGCCTTCCCTAGGCATC
TACTTCGCGTCCTATGAGGGCATCAAGGGGTGGCTGGAGCGGCGGTGGGG
CCTGGGAGAGCACGCATCCTCGTTCGGGGCCGGGGGCTTCGCGGGAGCGG
CAAGCTGGTTGTCGATCTATCCGCTTGACGTGGTCAAGTCCCAGGTCCAA
GTAGGGGCTCGGGGGTCAAGCAATCTTCGCTACGCTGGCCCGGTGGACTG
CACCTTCCAACTCATGAAGGCTGACGGTATCGGCGCCCTGTTTCGAGGCA
CCTCGGCGACACTGGCCAGAGATACGCCTTCCCTAGGCATCTACTTCGCG
TCCTATGAGGGCATCAAGGGGTGGCTGGAGCGGCGGTGGGGCCTGGGAGA
GCACGCATCCTCGTTCGGGGCCGGGGGCTTCGCGGGAGCGGCAAGCTGGT
TGTCGATCTATCCGCTTGACGTGGTCAAGTCC
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