mRNA_M-pyrifera_M_contig84008.19601.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84008.19601.1
Unique NamemRNA_M-pyrifera_M_contig84008.19601.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84008.19601.1 vs. uniprot
Match: R1DAR8_EMIHU (Thioredoxin n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DAR8_EMIHU)

HSP 1 Score: 81.6 bits (200), Expect = 5.380e-18
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 1
Query:   67 VTVIKFTAAWCGPCRAIAPAVHRMAQEMRNVQFVSIDGDLPAMRQTLSALGIRAFPTFLLYVDGRQIGQVRGADERKLRAAI 312
            + V+ FTA+WCGPCR IAP    +AQEM  V FV +D D    +      G+RA PTF  Y  G ++G+V GA+E  LRAAI
Sbjct:    8 LVVVDFTASWCGPCRRIAPVFASLAQEMPEVDFVKVDVD--EAQDVAQMCGVRAMPTFQFYRRGSKLGEVSGANEAALRAAI 87          
BLAST of mRNA_M-pyrifera_M_contig84008.19601.1 vs. uniprot
Match: A0A1R1XXR6_9FUNG (Thioredoxin n=3 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1XXR6_9FUNG)

HSP 1 Score: 81.6 bits (200), Expect = 7.430e-18
Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 1
Query:    1 VCDLRQPKEFMQAIETGKQEGCVTVIKFTAAWCGPCRAIAPAVHRMAQEMRNVQFVSIDGDLPAMRQTLSALGIRAFPTFLLYVDGRQIGQVRGADERKLRAAI 312
            V +L+  +EF  AI        +TV+ F A WCGPCRAI+PA+ + A+E   V+FV +D D   + Q    +GI A PT  LY DG+ + +V GA+   +RA I
Sbjct:    3 VVELKSTQEFNDAISAST----LTVVDFHAVWCGPCRAISPAILKFAEEFPAVKFVKVDVD--ELSQVAEQVGITAMPTIKLYRDGKVVAEVVGANINAIRAKI 100          
BLAST of mRNA_M-pyrifera_M_contig84008.19601.1 vs. uniprot
Match: A0A161TBW3_XYLHT (Thioredoxin n=1 Tax=Xylona heveae (strain CBS 132557 / TC161) TaxID=1328760 RepID=A0A161TBW3_XYLHT)

HSP 1 Score: 80.1 bits (196), Expect = 3.240e-17
Identity = 42/102 (41.18%), Postives = 63/102 (61.76%), Query Frame = 1
Query:    7 DLRQPKEFMQAIETGKQEGCVTVIKFTAAWCGPCRAIAPAVHRMAQEMRNVQFVSIDGDLPAMRQTLSALGIRAFPTFLLYVDGRQIGQVRGADERKLRAAI 312
            +L    EF  A+E       + V+   A WCGPC+ IAP V ++++E  NV+F  ID D   +    + L IRA PTF+L+ +G+++G+V GA+E+ LRAAI
Sbjct:    7 NLNNKSEFNTALEAPDT---LIVLDCFATWCGPCKVIAPKVVKLSEEFPNVKFYKIDVD--EVSDVAADLSIRAMPTFILFKNGQRVGEVVGANEKALRAAI 103          
BLAST of mRNA_M-pyrifera_M_contig84008.19601.1 vs. uniprot
Match: A0A8H7APW8_9EURO (Thioredoxin n=1 Tax=Endocarpon pusillum TaxID=364733 RepID=A0A8H7APW8_9EURO)

HSP 1 Score: 77.8 bits (190), Expect = 2.540e-16
Identity = 37/82 (45.12%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   67 VTVIKFTAAWCGPCRAIAPAVHRMAQEMRNVQFVSIDGDLPAMRQTLSALGIRAFPTFLLYVDGRQIGQVRGADERKLRAAI 312
            + V+   A WCGPC+ IAP V ++A+E ++ +F  ID D   +      LGIRA PTFLL+ +G ++G+V GA+E+ L+AAI
Sbjct:   23 LVVLDCFATWCGPCKVIAPKVVQLAKEFQDARFYKIDVD--EVSDVAQELGIRAMPTFLLFKNGEKVGEVVGANEKALKAAI 102          
BLAST of mRNA_M-pyrifera_M_contig84008.19601.1 vs. uniprot
Match: A0A6P8S151_GEOSA (Thioredoxin n=1 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8S151_GEOSA)

HSP 1 Score: 76.6 bits (187), Expect = 7.220e-16
Identity = 35/104 (33.65%), Postives = 64/104 (61.54%), Query Frame = 1
Query:    1 VCDLRQPKEFMQAIETGKQEGCVTVIKFTAAWCGPCRAIAPAVHRMAQEMRNVQFVSIDGDLPAMRQTLSALGIRAFPTFLLYVDGRQIGQVRGADERKLRAAI 312
            V +++   EF Q ++   ++  + ++ FTAAWCGPC+ IAP    + ++  ++ F+ +D D   +    S+ GIRA PTF+ Y  G+++ +V+GAD+ +L+  I
Sbjct:    2 VKEIQSKDEFDQILKDQSEK--LIIVDFTAAWCGPCKLIAPYFDHLCEKYPDILFLKVDVD--EVDDLASSCGIRAMPTFVFYKKGKKVAEVKGADKEQLKTKI 101          
BLAST of mRNA_M-pyrifera_M_contig84008.19601.1 vs. uniprot
Match: A0A813T761_9BILA (Thioredoxin n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813T761_9BILA)

HSP 1 Score: 76.3 bits (186), Expect = 1.020e-15
Identity = 36/104 (34.62%), Postives = 62/104 (59.62%), Query Frame = 1
Query:    1 VCDLRQPKEFMQAIETGKQEGCVTVIKFTAAWCGPCRAIAPAVHRMAQEMRNVQFVSIDGDLPAMRQTLSALGIRAFPTFLLYVDGRQIGQVRGADERKLRAAI 312
            V +++  +EF Q +++GK     +++ FTA WCGPC+ I P   R++ E   VQF+ +D D   +       G+RA PTF++YV+G ++ ++ GA + KL   +
Sbjct:    5 VIEVKSAEEFQQ-LKSGK----TSIVDFTATWCGPCQNIKPEFERLSNEYPTVQFLKVDVD--ELSDVAGDAGVRAMPTFMVYVNGEKVDELVGASKDKLNEIV 101          
BLAST of mRNA_M-pyrifera_M_contig84008.19601.1 vs. uniprot
Match: A0A7S3AFB6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AFB6_9EUKA)

HSP 1 Score: 79.7 bits (195), Expect = 4.640e-15
Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = 1
Query:   25 EFMQAIETGKQEGCVTVIKFTAAWCGPCRAIAPAVHRMAQEMRNVQFVSIDGDLPAMRQTLSALGIRAFPTFLLYVDGRQIGQVRGADERKLR 303
            E+ + +      G + ++ F A WCGPC+ IAPA+ ++A+E   V F  +D D   ++    A GI+A PTF  Y+D +++G VRGADE  +R
Sbjct:   12 EYERLLSQAASSGRMVLVDFFAEWCGPCKMIAPAIEKLAKEYPQVIFAKVDVD--QLQDVAQAAGIQAMPTFKTYLDTKEVGSVRGADEDAIR 102          
BLAST of mRNA_M-pyrifera_M_contig84008.19601.1 vs. uniprot
Match: A0A177T472_9BASI (Thioredoxin n=2 Tax=Tilletia TaxID=13289 RepID=A0A177T472_9BASI)

HSP 1 Score: 73.9 bits (180), Expect = 8.650e-15
Identity = 45/110 (40.91%), Postives = 60/110 (54.55%), Query Frame = 1
Query:    1 VCDLRQPKEFMQAIETGKQEGCVTVIKFTAAWCGPCRAIAPAVHRMAQEM-RNVQFVSIDGDLPAMRQTLSALGIRAFPTFLLYVDGRQIGQVRGADERKLRAAIGVAQE 327
            V  L    EF  AI+  K    V +I F A WCGPCR I+P   ++A++    V+F  +D D  A       LGI+A PTFLL+V+G + G+V GA   KL+  I  A E
Sbjct:    3 VTPLGSLSEFQSAIKDNK----VVLIDFWAEWCGPCRMISPIFEKLAEQHGEKVKFFKVDVD--AAPDVSQELGIKAMPTFLLFVNGEKAGEVVGAVPAKLQTLISQAVE 106          
BLAST of mRNA_M-pyrifera_M_contig84008.19601.1 vs. uniprot
Match: A0A507CIZ3_9FUNG (Thioredoxin domain-containing protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CIZ3_9FUNG)

HSP 1 Score: 75.1 bits (183), Expect = 1.300e-14
Identity = 34/81 (41.98%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   58 EGCVTVIKFTAAWCGPCRAIAPAVHRMAQEMRNVQFVSIDGDLPAMRQTLSALGIRAFPTFLLYVDGRQIGQVRGADERKL 300
            E  +TV KFTA WCGPC+A+AP    +A +  NV F+ +D D    +   ++ GIRA PTF+ + +G+++ +V GAD  K+
Sbjct:   18 ESKLTVTKFTAVWCGPCKAVAPRFEALANQTTNVNFLEVDVD--QQKDVAASSGIRAMPTFVFHKNGKKLAEVVGADIAKV 96          
BLAST of mRNA_M-pyrifera_M_contig84008.19601.1 vs. uniprot
Match: UPI001D0370C6 (thioredoxin domain-containing protein n=1 Tax=Hirsutella rhossiliensis TaxID=111463 RepID=UPI001D0370C6)

HSP 1 Score: 75.1 bits (183), Expect = 1.700e-14
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 1
Query:   73 VIKFTAAWCGPCRAIAPAVHRMAQEMR---NVQFVSIDGDLPAMRQTLSALGIRAFPTFLLYVDGRQIGQVRGADERKLRAAI 312
            V+   A WCGPC+AIAP +  M++E++    V FV  D D   + Q    LG+RA PTF+++ DG   G+V GAD RKL AA+
Sbjct:   96 VVDCFATWCGPCKAIAPVLETMSEELQFRDKVHFVKFDVD--RLPQVTQELGVRAMPTFVMFKDGVTAGEVVGADPRKLAAAL 176          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84008.19601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R1DAR8_EMIHU5.380e-1848.78Thioredoxin n=1 Tax=Emiliania huxleyi TaxID=2903 R... [more]
A0A1R1XXR6_9FUNG7.430e-1841.35Thioredoxin n=3 Tax=Smittium culicis TaxID=133412 ... [more]
A0A161TBW3_XYLHT3.240e-1741.18Thioredoxin n=1 Tax=Xylona heveae (strain CBS 1325... [more]
A0A8H7APW8_9EURO2.540e-1645.12Thioredoxin n=1 Tax=Endocarpon pusillum TaxID=3647... [more]
A0A6P8S151_GEOSA7.220e-1633.65Thioredoxin n=1 Tax=Geotrypetes seraphini TaxID=26... [more]
A0A813T761_9BILA1.020e-1534.62Thioredoxin n=1 Tax=Brachionus calyciflorus TaxID=... [more]
A0A7S3AFB6_9EUKA4.640e-1538.71Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A177T472_9BASI8.650e-1540.91Thioredoxin n=2 Tax=Tilletia TaxID=13289 RepID=A0A... [more]
A0A507CIZ3_9FUNG1.300e-1441.98Thioredoxin domain-containing protein n=1 Tax=Sync... [more]
UPI001D0370C61.700e-1445.78thioredoxin domain-containing protein n=1 Tax=Hirs... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84008contigM-pyrifera_M_contig84008:103..447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue1.4e-13
Seed eggNOG ortholog2903.EOD05929
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0526@1,KOG0907@2759
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Exons1
Model size345
Cds size315
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.445553-UTR-M-pyrifera_M_contig84008:102..1321622816747.445553-UTR-M-pyrifera_M_contig84008:102..132Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84008 103..132 +
1692278154.3455534-UTR-M-pyrifera_M_contig84008:102..1321692278154.3455534-UTR-M-pyrifera_M_contig84008:102..132Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84008 103..132 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816747.4568357-CDS-M-pyrifera_M_contig84008:132..4471622816747.4568357-CDS-M-pyrifera_M_contig84008:132..447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84008 133..447 +
1692278154.3570514-CDS-M-pyrifera_M_contig84008:132..4471692278154.3570514-CDS-M-pyrifera_M_contig84008:132..447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84008 133..447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84008.19601.1prot_M-pyrifera_M_contig84008.19601.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84008 133..447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84008.19601.1

>prot_M-pyrifera_M_contig84008.19601.1 ID=prot_M-pyrifera_M_contig84008.19601.1|Name=mRNA_M-pyrifera_M_contig84008.19601.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
MQAIETGKQEGCVTVIKFTAAWCGPCRAIAPAVHRMAQEMRNVQFVSIDG
DLPAMRQTLSALGIRAFPTFLLYVDGRQIGQVRGADERKLRAAIGVAQED
ADEAK
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mRNA from alignment at M-pyrifera_M_contig84008:103..447+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84008.19601.1 ID=mRNA_M-pyrifera_M_contig84008.19601.1|Name=mRNA_M-pyrifera_M_contig84008.19601.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig84008:103..447+ (Macrocystis pyrifera P11B4 male)
GTTTGTGATTTGAGACAGCCAAAGGAGTTTATGCAGGCAATTGAGACTGG GAAACAAGAAGGCTGTGTGACTGTAATCAAATTCACTGCAGCTTGGTGTG GTCCTTGTCGTGCAATTGCTCCAGCGGTGCACAGAATGGCGCAAGAAATG CGAAATGTGCAGTTTGTAAGCATTGATGGCGATTTGCCAGCGATGCGGCA AACCCTCTCTGCTCTTGGGATTCGAGCCTTCCCGACCTTTCTCCTCTATG TAGATGGTAGACAAATTGGTCAGGTGAGGGGTGCGGATGAGAGAAAGCTG CGAGCAGCCATTGGAGTAGCACAAGAAGATGCCGACGAAGCGAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84008:103..447+

>mRNA_M-pyrifera_M_contig84008.19601.1 ID=mRNA_M-pyrifera_M_contig84008.19601.1|Name=mRNA_M-pyrifera_M_contig84008.19601.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig84008:103..447+ (Macrocystis pyrifera P11B4 male)
ATGCAGGCAATTGAGACTGGGAAACAAGAAGGCTGTGTGACTGTAATCAA
ATTCACTGCAGCTTGGTGTGGTCCTTGTCGTGCAATTGCTCCAGCGGTGC
ACAGAATGGCGCAAGAAATGCGAAATGTGCAGTTTGTAAGCATTGATGGC
GATTTGCCAGCGATGCGGCAAACCCTCTCTGCTCTTGGGATTCGAGCCTT
CCCGACCTTTCTCCTCTATGTAGATGGTAGACAAATTGGTCAGGTGAGGG
GTGCGGATGAGAGAAAGCTGCGAGCAGCCATTGGAGTAGCACAAGAAGAT
GCCGACGAAGCGAAAATGCAGGCAATTGAGACTGGGAAACAAGAAGGCTG
TGTGACTGTAATCAAATTCACTGCAGCTTGGTGTGGTCCTTGTCGTGCAA
TTGCTCCAGCGGTGCACAGAATGGCGCAAGAAATGCGAAATGTGCAGTTT
GTAAGCATTGATGGCGATTTGCCAGCGATGCGGCAAACCCTCTCTGCTCT
TGGGATTCGAGCCTTCCCGACCTTTCTCCTCTATGTAGATGGTAGACAAA
TTGGTCAGGTGAGGGGTGCGGATGAGAGAAAGCTGCGAGCAGCCATTGGA
GTAGCACAAGAAGATGCCGACGAAGCGAAA
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