mRNA_M-pyrifera_M_contig83870.19583.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83870.19583.1
Unique NamemRNA_M-pyrifera_M_contig83870.19583.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig83870.19583.1 vs. uniprot
Match: UPI000644D476 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644D476)

HSP 1 Score: 108 bits (270), Expect = 3.020e-25
Identity = 52/107 (48.60%), Postives = 72/107 (67.29%), Query Frame = 1
Query:   82 LTAQQVHDLSTREMTPEDYELLLLLDEQVKPKTVSQTMIDGYDHSSVTEESLQKMTAGDDDQCMVCLTEYCAGEELITLP-CKHYFHAGCITHWLTASSTKCPLDGL 399
            L+A Q++DL  RE+TPEDY LLLLLD  VKP+T  ++++  +    +T+   Q+        CMVCL ++  GE++  +P CKH FH  CIT+WLT SSTKCP+DGL
Sbjct:  316 LSAIQINDLQNRELTPEDYSLLLLLDNSVKPRTAPESIVRSFPVERLTDAHQQRCPT-----CMVCLVDFEKGEQVTVIPKCKHVFHTPCITNWLTKSSTKCPIDGL 417          
BLAST of mRNA_M-pyrifera_M_contig83870.19583.1 vs. uniprot
Match: Q54TL7_DICDI (RING-type domain-containing protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54TL7_DICDI)

HSP 1 Score: 105 bits (263), Expect = 2.160e-24
Identity = 49/109 (44.95%), Postives = 73/109 (66.97%), Query Frame = 1
Query:   82 LTAQQVHDLSTREMTPEDYELLLLLDEQVKPKTVSQTMIDGYDHSSVTEESLQKMTAGDDDQCMVCLTEYCAGEELITLPCKHYFHAGCITHWLTASSTKCPLDGLSLL 408
            L+  Q++D+  RE+TPEDYELLLLLDE +KPKTV +  I+         + LQ+ +      CM+CL+++  GE +I LPC H FH  CI++WL+ +STKCP+D + ++
Sbjct:  286 LSQLQINDILNRELTPEDYELLLLLDENIKPKTVDEDDINKLLTVKFDTQLLQQFST-----CMICLSDFDLGESIIKLPCSHIFHINCISNWLSNASTKCPIDNIPIV 389          
BLAST of mRNA_M-pyrifera_M_contig83870.19583.1 vs. uniprot
Match: A0A151Z7M8_9MYCE (RING-type domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z7M8_9MYCE)

HSP 1 Score: 101 bits (252), Expect = 1.940e-23
Identity = 50/107 (46.73%), Postives = 67/107 (62.62%), Query Frame = 1
Query:   85 TAQQVHDLSTREMTPEDYELLLLLDEQVKPKTVSQTMIDGYDHSSVTEESLQKMTAGDDDQCMVCLTEYCAGEELITLPCKHYFHAGCITHWLTASSTKCPLDGLSL 405
            T  Q++DL  RE+TPEDYELL LLD  VKPKT+SQ +I+       TE+  Q  +      CM+CL  + + E+L  LPC H FH  CI+ WL  +STKCP+D + +
Sbjct:  186 TQDQINDLLNREITPEDYELLCLLDSTVKPKTISQDIIEELPTIRYTEQFSQFPS------CMICLFNFESNEDLTKLPCSHIFHINCISSWLANASTKCPIDNVPI 286          
BLAST of mRNA_M-pyrifera_M_contig83870.19583.1 vs. uniprot
Match: F0Z6Y9_DICPU (RING-type domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0Z6Y9_DICPU)

HSP 1 Score: 102 bits (254), Expect = 6.020e-23
Identity = 59/139 (42.45%), Postives = 82/139 (58.99%), Query Frame = 1
Query:    1 MREAVNMTARESLRAAARP-ATTLLPCGLTAQQVHDLSTREMTPEDYELLLLLDEQVKPKTVSQTMIDGYDHSSVTEESLQKMTAGDDDQCMVCLTEYCAGEELITLPCKHYFHAGCITHWLTASSTKCPLDGLSLLEE 414
            +R+A+ ++A E  R    P A++     L+  Q++D+  RE+TPEDYELLLLLD  VKPKTV    I+     S   E   K  +     CMVCL  +   E L  L C H FH  CI++WL+ +STKCP+D +S+L+E
Sbjct:  297 LRKALALSASEYDRQLRGPSASSARSMALSQNQINDILNRELTPEDYELLLLLDTTVKPKTVDIKDINSLPLVSFGSEYSDKFPS-----CMVCLISFEQNETLTKLNCGHIFHTNCISNWLSVASTKCPIDNISILDE 430          
BLAST of mRNA_M-pyrifera_M_contig83870.19583.1 vs. uniprot
Match: A0A151Z6J0_9MYCE (RING zinc finger-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z6J0_9MYCE)

HSP 1 Score: 101 bits (252), Expect = 8.740e-23
Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 1
Query:   82 LTAQQVHDLSTREMTPEDYELLLLLDEQVKPKTVSQTMIDGYDHSSVTEESLQKMTAGDDDQCMVCLTEYCAGEELITLPCKHYFHAGCITHWLTASSTKCPLDGLSL 405
            LT  Q++DL  RE+TPEDYELL LLD  VKPKT+SQ +I+       TE+  Q  +      CM+CL  +   E +  LPC H FH  CI++WL  +STKCP+D + +
Sbjct:  295 LTQAQINDLLNRELTPEDYELLCLLDSTVKPKTISQDIIEELPTVRYTEQYAQFPS------CMICLFNFEPNEHVTKLPCSHIFHINCISNWLANASTKCPIDNVPI 396          
BLAST of mRNA_M-pyrifera_M_contig83870.19583.1 vs. uniprot
Match: V4C7W5_LOTGI (RING-type domain-containing protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4C7W5_LOTGI)

HSP 1 Score: 100 bits (250), Expect = 1.670e-22
Identity = 54/99 (54.55%), Postives = 66/99 (66.67%), Query Frame = 1
Query:  103 DLSTREMTPEDYELLLLLDEQVKPKTVSQTMIDGYDHSSVTEESLQKMTAGDDDQCMVCLTEYCAGEELITLPCKHYFHAGCITHWLTASSTKCPLDGL 399
            +L  RE+TPEDYELL +LD+ V PKTVSQT+IDG+  + VTE SL  +T      C VCL  Y  G+ +  LPC H FH+ CI  WL+ SS  CPLDGL
Sbjct:  303 NLQHRELTPEDYELLSILDQSVAPKTVSQTIIDGFKTAEVTE-SLAGLT------CSVCLELYTIGQTVKYLPCGHDFHSQCIEMWLSNSSMNCPLDGL 394          
BLAST of mRNA_M-pyrifera_M_contig83870.19583.1 vs. uniprot
Match: A0A7S2K986_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2K986_9DINO)

HSP 1 Score: 100 bits (249), Expect = 1.800e-22
Identity = 52/109 (47.71%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   70 LPCGLTAQQVHDLSTREMTPEDYELLLLLDEQVKPKTVSQTMIDGYDHSSVTEESLQKMTAGDDDQCMVCLTEYCAGEELITLPCKHYFHAGCITHWLTASSTKCPLDG 396
            LPCGLTA +V+ L TRE+ PEDY+LLL LDE V   TVS+  + G   +S  EE + +       +C VCL  + +G+ ++ LPC+HYFH  CIT WLT     CPL G
Sbjct:  268 LPCGLTAGEVYSLLTREIQPEDYDLLLRLDEGVARPTVSKESVQGLPRAS-REEFMGR-------ECGVCLDAFGSGDAVVALPCRHYFHEACITKWLTECRHTCPLCG 368          
BLAST of mRNA_M-pyrifera_M_contig83870.19583.1 vs. uniprot
Match: UPI0006450617 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006450617)

HSP 1 Score: 99.8 bits (247), Expect = 1.800e-22
Identity = 59/137 (43.07%), Postives = 80/137 (58.39%), Query Frame = 1
Query:    1 MREAVNMTARE---SLRAAARPATTLLPCGLTAQQVHDLSTREMTPEDYELLLLLDEQVKPKTVSQTMIDGYDHSSVTEESLQKMTAGDDDQCMVCLTEYCAGEELITLP-CKHYFHAGCITHWLTASSTKCPLDGL 399
            +R+A++M+A +    +R A  P        L+  Q++D+  RE+TPEDYELLLLLD  VKPKT   +++  +        S  K      D CMVCL+E+   E L  LP C H FHA CIT+WL+ SS  CP+DGL
Sbjct:  196 LRDAISMSAADYDRQVRTARNP--------LSQAQINDILNRELTPEDYELLLLLDTTVKPKTTPTSVMSSF---QTVRYSASKYEF---DTCMVCLSEFEEQESLTLLPKCNHIFHANCITNWLSQSSRNCPIDGL 318          
BLAST of mRNA_M-pyrifera_M_contig83870.19583.1 vs. uniprot
Match: D3BMV4_POLPP (RING-type domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BMV4_POLPP)

HSP 1 Score: 99.0 bits (245), Expect = 9.740e-22
Identity = 58/134 (43.28%), Postives = 77/134 (57.46%), Query Frame = 1
Query:    1 MREAVNMTARESLRAAARPATTLLPCGLTAQQVHDLSTREMTPEDYELLLLLDEQVKPKTVSQTMIDGYDHSSVTEESLQKMTAGDDDQCMVCLTEYCAGEELITLP-CKHYFHAGCITHWLTASSTKCPLDGL 399
            ++ A++M+A E  R   R   +L    LT +Q++DL  RE+TPEDYELLLLLD  VKPKT  + ++         + SL      + D CMVCL E+   E +  LP C H FH  CI +WL  SS  CP+DGL
Sbjct:  281 LQAAMSMSAAEYDRTVGR---SLAVTTLTQRQINDLLNRELTPEDYELLLLLDNSVKPKTTPKEVLRTL---PTVKFSLSNTNHSNCDTCMVCLNEFNPNETVTNLPKCNHIFHGECINNWLANSSRNCPIDGL 408          
BLAST of mRNA_M-pyrifera_M_contig83870.19583.1 vs. uniprot
Match: A0A8J4Q1Z3_9MYCE (RING-type domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q1Z3_9MYCE)

HSP 1 Score: 98.2 bits (243), Expect = 1.600e-21
Identity = 48/108 (44.44%), Postives = 67/108 (62.04%), Query Frame = 1
Query:   82 LTAQQVHDLSTREMTPEDYELLLLLDEQVKPKTVSQTMIDGYDHSSVTEESLQKMTAGDDDQCMVCLTEYCAGEELITLPCKHYFHAGCITHWLTASSTKCPLDGLSL 405
            LT  Q++D+  RE+TPEDYELLLLLD  V PKTVS + I+        ++  ++  +     CM+CL  +   E +  LPC H FH  CI++WL+ SS KCP+D LS+
Sbjct:  288 LTQSQINDILNRELTPEDYELLLLLDASVAPKTVSVSKINSLPTVKFDDKLKERFPS-----CMICLNHFEDKETVTQLPCDHIFHVNCISNWLSMSSYKCPIDSLSI 390          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83870.19583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000644D4763.020e-2548.60hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
Q54TL7_DICDI2.160e-2444.95RING-type domain-containing protein n=1 Tax=Dictyo... [more]
A0A151Z7M8_9MYCE1.940e-2346.73RING-type domain-containing protein n=1 Tax=Tieghe... [more]
F0Z6Y9_DICPU6.020e-2342.45RING-type domain-containing protein n=1 Tax=Dictyo... [more]
A0A151Z6J0_9MYCE8.740e-2346.30RING zinc finger-containing protein n=1 Tax=Tieghe... [more]
V4C7W5_LOTGI1.670e-2254.55RING-type domain-containing protein n=1 Tax=Lottia... [more]
A0A7S2K986_9DINO1.800e-2247.71Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
UPI00064506171.800e-2243.07hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
D3BMV4_POLPP9.740e-2243.28RING-type domain-containing protein n=1 Tax=Polysp... [more]
A0A8J4Q1Z3_9MYCE1.600e-2144.44RING-type domain-containing protein n=1 Tax=Polysp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83870contigM-pyrifera_M_contig83870:51..467 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue2.4e-21
Seed eggNOG ortholog44689.DDB0238678
KEGG koko:K01482,ko:K11982,ko:K15695
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RING-like zinc finger
EggNOG OGs3XC6R@554915,KOG0800@1,KOG0800@2759
EC2.3.2.27,3.5.3.18
COG Functional cat.O
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121,ko04131,ko04147
Exons1
Model size417
Cds size417
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816746.5828216-CDS-M-pyrifera_M_contig83870:50..4671622816746.5828216-CDS-M-pyrifera_M_contig83870:50..467Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83870 51..467 -
1692278153.7466054-CDS-M-pyrifera_M_contig83870:50..4671692278153.7466054-CDS-M-pyrifera_M_contig83870:50..467Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83870 51..467 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83870.19583.1prot_M-pyrifera_M_contig83870.19583.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83870 51..467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83870.19583.1

>prot_M-pyrifera_M_contig83870.19583.1 ID=prot_M-pyrifera_M_contig83870.19583.1|Name=mRNA_M-pyrifera_M_contig83870.19583.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
MREAVNMTARESLRAAARPATTLLPCGLTAQQVHDLSTREMTPEDYELLL
LLDEQVKPKTVSQTMIDGYDHSSVTEESLQKMTAGDDDQCMVCLTEYCAG
EELITLPCKHYFHAGCITHWLTASSTKCPLDGLSLLEE*
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mRNA from alignment at M-pyrifera_M_contig83870:51..467-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83870.19583.1 ID=mRNA_M-pyrifera_M_contig83870.19583.1|Name=mRNA_M-pyrifera_M_contig83870.19583.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig83870:51..467- (Macrocystis pyrifera P11B4 male)
ATGAGGGAGGCTGTGAACATGACGGCCCGAGAGTCTCTCCGTGCGGCTGC CAGGCCAGCGACTACGCTCCTGCCGTGCGGCCTCACTGCCCAGCAGGTCC ACGACCTCTCCACCCGTGAGATGACTCCAGAGGACTATGAGCTCTTGCTC CTTCTCGACGAGCAGGTCAAGCCCAAGACTGTCAGCCAAACGATGATTGA CGGTTACGATCACTCCTCCGTTACGGAGGAGTCGCTCCAGAAGATGACGG CTGGGGACGACGACCAGTGCATGGTCTGCCTCACTGAGTACTGCGCTGGA GAGGAATTGATCACTCTCCCGTGCAAGCACTACTTCCATGCCGGGTGCAT CACTCACTGGCTCACTGCCTCTTCCACCAAGTGTCCTCTCGATGGCCTCT CCCTCTTGGAGGAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83870:51..467-

>mRNA_M-pyrifera_M_contig83870.19583.1 ID=mRNA_M-pyrifera_M_contig83870.19583.1|Name=mRNA_M-pyrifera_M_contig83870.19583.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig83870:51..467- (Macrocystis pyrifera P11B4 male)
ATGAGGGAGGCTGTGAACATGACGGCCCGAGAGTCTCTCCGTGCGGCTGC
CAGGCCAGCGACTACGCTCCTGCCGTGCGGCCTCACTGCCCAGCAGGTCC
ACGACCTCTCCACCCGTGAGATGACTCCAGAGGACTATGAGCTCTTGCTC
CTTCTCGACGAGCAGGTCAAGCCCAAGACTGTCAGCCAAACGATGATTGA
CGGTTACGATCACTCCTCCGTTACGGAGGAGTCGCTCCAGAAGATGACGG
CTGGGGACGACGACCAGTGCATGGTCTGCCTCACTGAGTACTGCGCTGGA
GAGGAATTGATCACTCTCCCGTGCAAGCACTACTTCCATGCCGGGTGCAT
CACTCACTGGCTCACTGCCTCTTCCACCAAGTGTCCTCTCGATGGCCTCT
CCCTCTTGGAGGAATGAATGAGGGAGGCTGTGAACATGACGGCCCGAGAG
TCTCTCCGTGCGGCTGCCAGGCCAGCGACTACGCTCCTGCCGTGCGGCCT
CACTGCCCAGCAGGTCCACGACCTCTCCACCCGTGAGATGACTCCAGAGG
ACTATGAGCTCTTGCTCCTTCTCGACGAGCAGGTCAAGCCCAAGACTGTC
AGCCAAACGATGATTGACGGTTACGATCACTCCTCCGTTACGGAGGAGTC
GCTCCAGAAGATGACGGCTGGGGACGACGACCAGTGCATGGTCTGCCTCA
CTGAGTACTGCGCTGGAGAGGAATTGATCACTCTCCCGTGCAAGCACTAC
TTCCATGCCGGGTGCATCACTCACTGGCTCACTGCCTCTTCCACCAAGTG
TCCTCTCGATGGCCTCTCCCTCTTGGAGGAATGA
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