mRNA_M-pyrifera_M_contig8385.19581.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8385.19581.1
Unique NamemRNA_M-pyrifera_M_contig8385.19581.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8385.19581.1 vs. uniprot
Match: A0A6H5JNH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH6_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 5.430e-47
Identity = 72/88 (81.82%), Postives = 77/88 (87.50%), Query Frame = 3 
Query:    3 WRFMLPDVGMPCIPVFEDNQGAVQLAQNPITNSNSKHIDVRHHFLRELVGRKEISIIHVPSPFQHADFLTKAISRESFEFHRSLAMNM 266
            WRFMLPD GMPCIPVFEDNQGA+Q+A NPITNSNSKHIDVRHHF+RELV RKEISI HV S FQHADFLTKAIS+ESF  HR   MN+
Sbjct:   31 WRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNL 118
[Close]
BLAST of mRNA_M-pyrifera_M_contig8385.19581.1 vs. uniprot
Match: A0A6H5KIJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ7_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.270e-46
Identity = 71/88 (80.68%), Postives = 81/88 (92.05%), Query Frame = 3 
Query:    3 WRFMLPDVGMPCIPVFEDNQGAVQLAQNPITNSNSKHIDVRHHFLRELVGRKEISIIHVPSPFQHADFLTKAISRESFEFHRSLAMNM 266
            WRFMLP VGMPCIP+FEDNQGA+QLAQNPI+NSNSKHIDVRHHFLRELV RKEIS+IHVPSP+Q ADFLTK++S++SFE HR   MN+
Sbjct:  139 WRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDSFESHREFVMNL 226
[Close]
BLAST of mRNA_M-pyrifera_M_contig8385.19581.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 1.850e-46
Identity = 71/88 (80.68%), Postives = 81/88 (92.05%), Query Frame = 3 
Query:    3 WRFMLPDVGMPCIPVFEDNQGAVQLAQNPITNSNSKHIDVRHHFLRELVGRKEISIIHVPSPFQHADFLTKAISRESFEFHRSLAMNM 266
            WRFMLP VGMPCIPVFEDNQGA+QLAQNPI+NSNSKHIDVRHHFLRELV RKEIS+IHVPSP+Q ADFLTK++S+++FE HR   MN+
Sbjct:  128 WRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFVMNL 215
[Close]
BLAST of mRNA_M-pyrifera_M_contig8385.19581.1 vs. uniprot
Match: A0A6H5JWJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ4_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 5.810e-46
Identity = 71/88 (80.68%), Postives = 81/88 (92.05%), Query Frame = 3 
Query:    3 WRFMLPDVGMPCIPVFEDNQGAVQLAQNPITNSNSKHIDVRHHFLRELVGRKEISIIHVPSPFQHADFLTKAISRESFEFHRSLAMNM 266
            WRFMLP VGMPCIPVFEDNQGA+QLAQNPI+NSNSKHIDVRHHFLRELV RKEIS+IHVPSP+Q ADFLTK++S+++FE HR   MN+
Sbjct:  168 WRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFVMNL 255
[Close]
BLAST of mRNA_M-pyrifera_M_contig8385.19581.1 vs. uniprot
Match: A0A6H5JUW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW6_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 9.110e-46
Identity = 70/88 (79.55%), Postives = 80/88 (90.91%), Query Frame = 3 
Query:    3 WRFMLPDVGMPCIPVFEDNQGAVQLAQNPITNSNSKHIDVRHHFLRELVGRKEISIIHVPSPFQHADFLTKAISRESFEFHRSLAMNM 266
            WRFMLP VGMPCIPVFEDNQGA+QLAQNPI+NSNSKHIDVRHHFLRELV RKEIS+IHVPSP+Q ADFLTK++ +++FE HR   MN+
Sbjct:  123 WRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFVMNL 210
[Close]
BLAST of mRNA_M-pyrifera_M_contig8385.19581.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 2.270e-45
Identity = 72/88 (81.82%), Postives = 79/88 (89.77%), Query Frame = 3 
Query:    3 WRFMLPDVGMPCIPVFEDNQGAVQLAQNPITNSNSKHIDVRHHFLRELVGRKEISIIHVPSPFQHADFLTKAISRESFEFHRSLAMNM 266
            WRFMLPD GMPCIPVFEDNQGA+Q+A NPITNSNSKHIDVRHHF+RELV RKEISI +VP+PFQHADFLTKAIS+ESF  HR   MN+
Sbjct:  233 WRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDFVMNL 320
[Close]
BLAST of mRNA_M-pyrifera_M_contig8385.19581.1 vs. uniprot
Match: A0A6H5KQF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQF2_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.690e-44
Identity = 68/88 (77.27%), Postives = 79/88 (89.77%), Query Frame = 3 
Query:    3 WRFMLPDVGMPCIPVFEDNQGAVQLAQNPITNSNSKHIDVRHHFLRELVGRKEISIIHVPSPFQHADFLTKAISRESFEFHRSLAMNM 266
            WRFMLP VGMPCIPVFE NQGA+QLAQNPI+NSNSKHIDVRHHFL+ LV RKEIS+IHVPSP+Q ADFLTK++S+++FE HR   MN+
Sbjct:   81 WRFMLPQVGMPCIPVFEGNQGAIQLAQNPISNSNSKHIDVRHHFLKGLVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFVMNL 168
[Close]
BLAST of mRNA_M-pyrifera_M_contig8385.19581.1 vs. uniprot
Match: A0A6H5K0S2_9PHAE (Uncharacterized protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0S2_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 2.360e-44
Identity = 68/85 (80.00%), Postives = 78/85 (91.76%), Query Frame = 3 
Query:   12 MLPDVGMPCIPVFEDNQGAVQLAQNPITNSNSKHIDVRHHFLRELVGRKEISIIHVPSPFQHADFLTKAISRESFEFHRSLAMNM 266
            MLP VGMPCIPVFEDNQGA+QLAQNPI+NSNSKHIDVRHHFLRELV RKEIS+IHVPSP+QHA FLTK++S+++FE HR   MN+
Sbjct:    1 MLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQHAYFLTKSLSKDAFESHREFGMNI 85
[Close]
BLAST of mRNA_M-pyrifera_M_contig8385.19581.1 vs. uniprot
Match: A0A6H5K826_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K826_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 3.620e-44
Identity = 68/88 (77.27%), Postives = 74/88 (84.09%), Query Frame = 3 
Query:    3 WRFMLPDVGMPCIPVFEDNQGAVQLAQNPITNSNSKHIDVRHHFLRELVGRKEISIIHVPSPFQHADFLTKAISRESFEFHRSLAMNM 266
            W FMLPD GMPCIPVFEDNQGA+Q+A NPITNSNSKHIDVRHHF+RELV RKEISI HVP+ FQHADFLTKAI +E    HR   MN+
Sbjct:   15 WPFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAICKEPCALHRDFVMNL 102
[Close]
BLAST of mRNA_M-pyrifera_M_contig8385.19581.1 vs. uniprot
Match: A0A6H5K7L4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7L4_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 9.690e-44
Identity = 68/88 (77.27%), Postives = 77/88 (87.50%), Query Frame = 3 
Query:    3 WRFMLPDVGMPCIPVFEDNQGAVQLAQNPITNSNSKHIDVRHHFLRELVGRKEISIIHVPSPFQHADFLTKAISRESFEFHRSLAMNM 266
            WRFMLP VGMPCIP+FEDNQGA+QLAQNPI+NSNSKHIDVRHHFLRELV RK IS IHVPSP+Q ADFL K++S ++FE HR   MN+
Sbjct:  116 WRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKAISAIHVPSPYQRADFLPKSLSEDAFESHRDFVMNL 203
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8385.19581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNH6_9PHAE5.430e-4781.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIJ7_9PHAE1.270e-4680.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEZ8_9PHAE1.850e-4680.68Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWJ4_9PHAE5.810e-4680.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUW6_9PHAE9.110e-4679.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE2.270e-4581.82Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQF2_9PHAE1.690e-4477.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0S2_9PHAE2.360e-4480.00Uncharacterized protein n=6 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K826_9PHAE3.620e-4477.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7L4_9PHAE9.690e-4477.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8385contigM-pyrifera_M_contig8385:473..985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score78.2
Seed ortholog evalue2.1e-12
Seed eggNOG ortholog7070.TC002223-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SH01@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size513
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8385.19581.1prot_M-pyrifera_M_contig8385.19581.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8385 484..744 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816746.485285-UTR-M-pyrifera_M_contig8385:472..4831622816746.485285-UTR-M-pyrifera_M_contig8385:472..483Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8385 473..483 +
1692278153.681092-UTR-M-pyrifera_M_contig8385:472..4831692278153.681092-UTR-M-pyrifera_M_contig8385:472..483Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8385 473..483 +
1622816746.5161824-UTR-M-pyrifera_M_contig8385:744..9851622816746.5161824-UTR-M-pyrifera_M_contig8385:744..985Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8385 745..985 +
1692278153.7173839-UTR-M-pyrifera_M_contig8385:744..9851692278153.7173839-UTR-M-pyrifera_M_contig8385:744..985Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8385 745..985 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816746.5029047-CDS-M-pyrifera_M_contig8385:483..7441622816746.5029047-CDS-M-pyrifera_M_contig8385:483..744Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8385 484..744 +
1692278153.7045581-CDS-M-pyrifera_M_contig8385:483..7441692278153.7045581-CDS-M-pyrifera_M_contig8385:483..744Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8385 484..744 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8385.19581.1

>prot_M-pyrifera_M_contig8385.19581.1 ID=prot_M-pyrifera_M_contig8385.19581.1|Name=mRNA_M-pyrifera_M_contig8385.19581.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
MLPDVGMPCIPVFEDNQGAVQLAQNPITNSNSKHIDVRHHFLRELVGRKE
ISIIHVPSPFQHADFLTKAISRESFEFHRSLAMNMW*
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mRNA from alignment at M-pyrifera_M_contig8385:473..985+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8385.19581.1 ID=mRNA_M-pyrifera_M_contig8385.19581.1|Name=mRNA_M-pyrifera_M_contig8385.19581.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=513bp|location=Sequence derived from alignment at M-pyrifera_M_contig8385:473..985+ (Macrocystis pyrifera P11B4 male)
TTTGGCGCTTCATGTTGCCTGATGTAGGCATGCCGTGCATACCGGTGTTC
GAGGATAATCAGGGTGCGGTGCAGCTTGCGCAGAACCCTATCACCAACTC
AAACTCCAAGCACATCGACGTGCGACACCACTTCCTCAGGGAACTGGTTG
GGAGGAAAGAGATATCGATCATCCACGTACCGTCCCCTTTTCAGCATGCG
GATTTTCTGACCAAGGCCATCTCGCGAGAATCGTTCGAGTTCCACCGTAG
CCTTGCGATGAATATGTGGTGACCCTATTGGTGTGGTATTGATTTCATCG
GGTGCTGGTGATCGTTAGCCATGGCCAGTACCTTAGTAAAATTCGTGTTG
ATTCCAACGGGTGTCGATGATCGTTAGCCATGATTGACACTTTAGTGACC
TTCCTTCGGACTGTGTTGTTTTATTTTGAGATTTCAGGGTGTTATCATAA
AAGGCGTTGGATGCATAGGTTTTATTTTTGATATTTTGACCGGACGAAAG
TTATCAGGACTGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8385:473..985+

>mRNA_M-pyrifera_M_contig8385.19581.1 ID=mRNA_M-pyrifera_M_contig8385.19581.1|Name=mRNA_M-pyrifera_M_contig8385.19581.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig8385:473..985+ (Macrocystis pyrifera P11B4 male)
ATGTTGCCTGATGTAGGCATGCCGTGCATACCGGTGTTCGAGGATAATCA
GGGTGCGGTGCAGCTTGCGCAGAACCCTATCACCAACTCAAACTCCAAGC
ACATCGACGTGCGACACCACTTCCTCAGGGAACTGGTTGGGAGGAAAGAG
ATATCGATCATCCACGTACCGTCCCCTTTTCAGCATGCGGATTTTCTGAC
CAAGGCCATCTCGCGAGAATCGTTCGAGTTCCACCGTAGCCTTGCGATGA
ATATGTGGTGAATGTTGCCTGATGTAGGCATGCCGTGCATACCGGTGTTC
GAGGATAATCAGGGTGCGGTGCAGCTTGCGCAGAACCCTATCACCAACTC
AAACTCCAAGCACATCGACGTGCGACACCACTTCCTCAGGGAACTGGTTG
GGAGGAAAGAGATATCGATCATCCACGTACCGTCCCCTTTTCAGCATGCG
GATTTTCTGACCAAGGCCATCTCGCGAGAATCGTTCGAGTTCCACCGTAG
CCTTGCGATGAATATGTGGTGA
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