mRNA_M-pyrifera_M_contig83821.19571.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig83821.19571.1
Unique Name	mRNA_M-pyrifera_M_contig83821.19571.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig83821.19571.1 vs. uniprot
Match: A0A5A8DZD3_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DZD3_CAFRO)

HSP 1 Score: 97.4 bits (241), Expect = 2.780e-21
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 1

Query:    1 MFRIGGTATAPVYKVVTPIGAIVTLKTSSWRGFWYINVEVEVPSAYHGCISGLCGSWDDDTTNDYVGFDGVDYIGSTATQRHEYGLTWKVPLEEDLFLYPN 303
            +FR+   A  P Y++  P G  V  + S WR   YINV+V+VPS Y   + GLCGS+D +  ND+VG DG+ Y G +   RH+YGLT++VP      L+ N
Sbjct: 1095 IFRLNAQAGLPAYRITLPNGGFVEFRASGWRNRHYINVDVKVPSLYRNRLGGLCGSFDGNGNNDWVGSDGITYNGGSNQGRHDYGLTFRVPSSAPDNLFTN 1195

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BLAST of mRNA_M-pyrifera_M_contig83821.19571.1 vs. uniprot
Match: A0A5A8CVR8_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CVR8_CAFRO)

HSP 1 Score: 97.4 bits (241), Expect = 2.790e-21
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 1

Query:    1 MFRIGGTATAPVYKVVTPIGAIVTLKTSSWRGFWYINVEVEVPSAYHGCISGLCGSWDDDTTNDYVGFDGVDYIGSTATQRHEYGLTWKVPLEEDLFLYPN 303
            +FR+   A  P Y++  P G  V  + S WR   YINV+V+VPS Y   + GLCGS+D +  ND+VG DG+ Y G +   RH+YGLT++VP      L+ N
Sbjct: 1095 IFRLNAQAGLPAYRITLPNGGFVEFRASGWRNRHYINVDVKVPSLYRNRLGGLCGSFDGNGNNDWVGSDGITYNGGSNQGRHDYGLTFRVPSSAPDNLFTN 1195

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BLAST of mRNA_M-pyrifera_M_contig83821.19571.1 vs. uniprot
Match: A0A7S0PAB6_CAFRO (Hypothetical protein (Fragment) n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PAB6_CAFRO)

HSP 1 Score: 96.7 bits (239), Expect = 4.970e-21
Identity = 43/101 (42.57%), Postives = 61/101 (60.40%), Query Frame = 1

Query:    1 MFRIGGTATAPVYKVVTPIGAIVTLKTSSWRGFWYINVEVEVPSAYHGCISGLCGSWDDDTTNDYVGFDGVDYIGSTATQRHEYGLTWKVPLEEDLFLYPN 303
            +FR+   A  P Y++  P G  V  + S WR   YINV+++VPS Y   + GLCGS+D +  ND+VG DG+ Y G +   RH+YGLT++VP      L+ N
Sbjct:  741 IFRLNAQAGLPAYRITLPNGGFVEFRASGWRNRHYINVDIKVPSLYRDRLGGLCGSFDGNGNNDWVGSDGITYNGGSNQGRHDYGLTFRVPSSAPDNLFTN 841

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BLAST of mRNA_M-pyrifera_M_contig83821.19571.1 vs. uniprot
Match: A0A5A8C8H2_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C8H2_CAFRO)

HSP 1 Score: 94.7 bits (234), Expect = 2.430e-20
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 1

Query:    1 MFRIGGTATAPVYKVVTPIGAIVTLKTSSWRGFWYINVEVEVPSAYHGCISGLCGSWDDDTTNDYVGFDGVDYIGSTATQRHEYGLTWKVPLEEDLFLYPN 303
            +FR+   A  P Y++  P G  V  + S WR   YINV+++VPS Y   + GLCGS+D +  ND++G DG+ Y G +   RH++GLT++VP      L+ N
Sbjct: 1080 IFRLNAQAGLPAYRITLPNGGFVEFRASGWRNRHYINVDIKVPSLYRDRLGGLCGSFDGNGNNDWIGSDGITYNGGSNQGRHDFGLTFRVPSSAPDNLFTN 1180

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BLAST of mRNA_M-pyrifera_M_contig83821.19571.1 vs. uniprot
Match: A0A5A8EQ31_CAFRO (VWFD domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EQ31_CAFRO)

HSP 1 Score: 94.7 bits (234), Expect = 2.440e-20
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 1

Query:    1 MFRIGGTATAPVYKVVTPIGAIVTLKTSSWRGFWYINVEVEVPSAYHGCISGLCGSWDDDTTNDYVGFDGVDYIGSTATQRHEYGLTWKVPLEEDLFLYPN 303
            +FR+   A  P Y++  P G  V  + S WR   YINV+++VPS Y   + GLCGS+D +  ND++G DG+ Y G +   RH++GLT++VP      L+ N
Sbjct:  510 IFRLNAQAGLPAYRITLPNGGFVEFRASGWRNRHYINVDIKVPSLYRDRLGGLCGSFDGNGNNDWIGSDGITYNGGSNQGRHDFGLTFRVPSSAPDNLFTN 610

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BLAST of mRNA_M-pyrifera_M_contig83821.19571.1 vs. uniprot
Match: A0A5A8E061_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E061_CAFRO)

HSP 1 Score: 94.7 bits (234), Expect = 2.470e-20
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 1

Query:    1 MFRIGGTATAPVYKVVTPIGAIVTLKTSSWRGFWYINVEVEVPSAYHGCISGLCGSWDDDTTNDYVGFDGVDYIGSTATQRHEYGLTWKVPLEEDLFLYPN 303
            +FR+   A  P Y++  P G  V  + S WR   YINV+++VPS Y   + GLCGS+D +  ND++G DG+ Y G +   RH++GLT++VP      L+ N
Sbjct: 2525 IFRLNAQAGLPAYRITLPNGGFVEFRASGWRNRHYINVDIKVPSLYRDRLGGLCGSFDGNGNNDWIGSDGITYNGGSNQGRHDFGLTFRVPSSAPDNLFTN 2625

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BLAST of mRNA_M-pyrifera_M_contig83821.19571.1 vs. uniprot
Match: A0A5A8DXW9_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DXW9_CAFRO)

HSP 1 Score: 94.7 bits (234), Expect = 2.470e-20
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 1

Query:    1 MFRIGGTATAPVYKVVTPIGAIVTLKTSSWRGFWYINVEVEVPSAYHGCISGLCGSWDDDTTNDYVGFDGVDYIGSTATQRHEYGLTWKVPLEEDLFLYPN 303
            +FR+   A  P Y++  P G  V  + S WR   YINV+++VPS Y   + GLCGS+D +  ND++G DG+ Y G +   RH++GLT++VP      L+ N
Sbjct: 2671 IFRLNAQAGLPAYRITLPNGGFVEFRASGWRNRHYINVDIKVPSLYRDRLGGLCGSFDGNGNNDWIGSDGITYNGGSNQGRHDFGLTFRVPSSAPDNLFTN 2771

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BLAST of mRNA_M-pyrifera_M_contig83821.19571.1 vs. uniprot
Match: A0A8B8EPW8_CRAVI (uncharacterized protein LOC111135853 isoform X1 n=3 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8EPW8_CRAVI)

HSP 1 Score: 67.8 bits (164), Expect = 7.020e-11
Identity = 34/85 (40.00%), Postives = 49/85 (57.65%), Query Frame = 1

Query:   37 YKVVTPIGAIVTLKTSSWRGFWYINVEVEVPSAYHGCISGLCGSWDDDTTNDYVGFDGVDYIGSTATQRHEYGLTWKVPLEEDLF 291
            Y +V P GA+V +     R   +INV+++  SA +G   GLCG++DDD TND +  DG  Y G    Q  E+  TW+V  +E L+
Sbjct: 5370 YMIVLPTGAVVMVMNGRKRTSQFINVKLKASSADYGSTEGLCGTFDDDKTNDLMKRDGTLY-GGREKQPTEFSETWRVSRDESLY 5453

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BLAST of mRNA_M-pyrifera_M_contig83821.19571.1 vs. uniprot
Match: K1RKN1_CRAGI (von Willebrand factor D and EGF domain-containing protein n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1RKN1_CRAGI)

HSP 1 Score: 67.0 bits (162), Expect = 1.310e-10
Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 1

Query:   37 YKVVTPIGAIVTLKTSSWRGFWYINVEVEVPSAYHGCISGLCGSWDDDTTNDYVGFDGVDYIGSTATQRHEYGLTWKVPLEEDLF 291
            Y +V P GA+V +     R   +INV+ +  +A +G   GLCG++DDD TND +  DG  Y G    Q  E+  TW+V  EE L+
Sbjct: 5187 YTIVLPTGAVVMVMNGRKRTSQFINVKFKASAADYGNTEGLCGTFDDDKTNDLMKRDGTLY-GGREKQPSEFSKTWRVTKEESLY 5270

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BLAST of mRNA_M-pyrifera_M_contig83821.19571.1 vs. uniprot
Match: UPI00148A4BCA (uncharacterized protein LOC105327563 isoform X1 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A4BCA)

HSP 1 Score: 67.0 bits (162), Expect = 1.310e-10
Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 1

Query:   37 YKVVTPIGAIVTLKTSSWRGFWYINVEVEVPSAYHGCISGLCGSWDDDTTNDYVGFDGVDYIGSTATQRHEYGLTWKVPLEEDLF 291
            Y +V P GA+V +     R   +INV+ +  +A +G   GLCG++DDD TND +  DG  Y G    Q  E+  TW+V  EE L+
Sbjct: 5377 YTIVLPTGAVVMVMNGRKRTSQFINVKFKASAADYGNTEGLCGTFDDDKTNDLMKRDGTLY-GGREKQPSEFSKTWRVTKEESLY 5460

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig83821.19571.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig83821.19571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18


Match Name	E-value	Identity	Description
A0A5A8DZD3_CAFRO	2.780e-21	43.56	Uncharacterized protein n=1 Tax=Cafeteria roenberg...	[more]
A0A5A8CVR8_CAFRO	2.790e-21	43.56	Uncharacterized protein n=5 Tax=Cafeteria roenberg...	[more]
A0A7S0PAB6_CAFRO	4.970e-21	42.57	Hypothetical protein (Fragment) n=2 Tax=Cafeteria ...	[more]
A0A5A8C8H2_CAFRO	2.430e-20	40.59	Uncharacterized protein n=1 Tax=Cafeteria roenberg...	[more]
A0A5A8EQ31_CAFRO	2.440e-20	40.59	VWFD domain-containing protein n=1 Tax=Cafeteria r...	[more]
A0A5A8E061_CAFRO	2.470e-20	40.59	Uncharacterized protein n=1 Tax=Cafeteria roenberg...	[more]
A0A5A8DXW9_CAFRO	2.470e-20	40.59	Uncharacterized protein n=1 Tax=Cafeteria roenberg...	[more]
A0A8B8EPW8_CRAVI	7.020e-11	40.00	uncharacterized protein LOC111135853 isoform X1 n=...	[more]
K1RKN1_CRAGI	1.310e-10	40.00	von Willebrand factor D and EGF domain-containing ...	[more]
UPI00148A4BCA	1.310e-10	40.00	uncharacterized protein LOC105327563 isoform X1 n=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig83821	contig	M-pyrifera_M_contig83821:517..849 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Metazoa
Seed ortholog score	66.6
Seed ortholog evalue	8.2e-09
Seed eggNOG ortholog	6500.XP_005089140.1
Hectar predicted targeting category	other localisation
EggNOG free text desc.	von Willebrand factor D and EGF
EggNOG OGs	38DB6@33154,3BAE0@33208,3CV9E@33213,KOG1216@1,KOG1216@2759,KOG1217@1,KOG1217@2759
COG Functional cat.	T
Best tax level	Bilateria
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	333
Cds size	333
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816746.105675-CDS-M-pyrifera_M_contig83821:516..849	1622816746.105675-CDS-M-pyrifera_M_contig83821:516..849	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig83821 517..849 -
1692278153.4896886-CDS-M-pyrifera_M_contig83821:516..849	1692278153.4896886-CDS-M-pyrifera_M_contig83821:516..849	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig83821 517..849 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig83821.19571.1	prot_M-pyrifera_M_contig83821.19571.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig83821 517..849 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig83821:517..849-
coding sequence from alignment at M-pyrifera_M_contig83821:517..849-

protein sequence of mRNA_M-pyrifera_M_contig83821.19571.1

>prot_M-pyrifera_M_contig83821.19571.1 ID=prot_M-pyrifera_M_contig83821.19571.1|Name=mRNA_M-pyrifera_M_contig83821.19571.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
MFRIGGTATAPVYKVVTPIGAIVTLKTSSWRGFWYINVEVEVPSAYHGCI
SGLCGSWDDDTTNDYVGFDGVDYIGSTATQRHEYGLTWKVPLEEDLFLYP
NNHTVGPSDSP

mRNA from alignment at M-pyrifera_M_contig83821:517..849-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig83821.19571.1 ID=mRNA_M-pyrifera_M_contig83821.19571.1|Name=mRNA_M-pyrifera_M_contig83821.19571.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig83821:517..849- (Macrocystis pyrifera P11B4 male)
ATGTTCCGCATTGGTGGTACAGCAACGGCTCCAGTGTACAAAGTTGTCAC
TCCTATTGGTGCGATTGTAACTCTCAAGACATCATCTTGGCGAGGCTTTT
GGTACATCAATGTGGAAGTGGAAGTTCCATCAGCGTATCATGGCTGTATT
TCTGGATTGTGTGGGTCTTGGGATGATGACACTACCAATGATTACGTTGG
GTTTGATGGTGTAGACTACATTGGAAGCACTGCAACACAGCGTCATGAAT
ATGGATTAACATGGAAGGTACCATTGGAGGAAGACCTCTTCCTCTATCCA
AACAACCATACAGTTGGACCAAGTGACTCTCCA

Coding sequence (CDS) from alignment at M-pyrifera_M_contig83821:517..849-

>mRNA_M-pyrifera_M_contig83821.19571.1 ID=mRNA_M-pyrifera_M_contig83821.19571.1|Name=mRNA_M-pyrifera_M_contig83821.19571.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig83821:517..849- (Macrocystis pyrifera P11B4 male)
ATGTTCCGCATTGGTGGTACAGCAACGGCTCCAGTGTACAAAGTTGTCAC
TCCTATTGGTGCGATTGTAACTCTCAAGACATCATCTTGGCGAGGCTTTT
GGTACATCAATGTGGAAGTGGAAGTTCCATCAGCGTATCATGGCTGTATT
TCTGGATTGTGTGGGTCTTGGGATGATGACACTACCAATGATTACGTTGG
GTTTGATGGTGTAGACTACATTGGAAGCACTGCAACACAGCGTCATGAAT
ATGGATTAACATGGAAGGTACCATTGGAGGAAGACCTCTTCCTCTATCCA
AACAACCATACAGTTGGACCAAGTGACTCTCCAATGTTCCGCATTGGTGG
TACAGCAACGGCTCCAGTGTACAAAGTTGTCACTCCTATTGGTGCGATTG
TAACTCTCAAGACATCATCTTGGCGAGGCTTTTGGTACATCAATGTGGAA
GTGGAAGTTCCATCAGCGTATCATGGCTGTATTTCTGGATTGTGTGGGTC
TTGGGATGATGACACTACCAATGATTACGTTGGGTTTGATGGTGTAGACT
ACATTGGAAGCACTGCAACACAGCGTCATGAATATGGATTAACATGGAAG
GTACCATTGGAGGAAGACCTCTTCCTCTATCCAAACAACCATACAGTTGG
ACCAAGTGACTCTCCA