mRNA_M-pyrifera_M_contig83770.19559.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83770.19559.1
Unique NamemRNA_M-pyrifera_M_contig83770.19559.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83770.19559.1 vs. uniprot
Match: A0A6U3SGD3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SGD3_9STRA)

HSP 1 Score: 161 bits (407), Expect = 2.660e-48
Identity = 78/104 (75.00%), Postives = 85/104 (81.73%), Query Frame = 1 
Query:   49 KEVSGEEGENLLEIAHREGIPMEGACEGVCACSTCHVILEDSVYDSLPEASEDEEDMLDIAPGLTLTSRLGCQVELDASMEGMEVRLPAVTRNFYVDGHVPQPH 360
            K V    GE+LL+ AHR  I +EGACEGVCACSTCHVIL D V+DSLPEASEDEEDMLD+A GL+ TSRLGCQV +   MEGMEV LPA TRNFYVDGHVPQPH
Sbjct:   69 KTVKARVGESLLQTAHRHHIDLEGACEGVCACSTCHVILSDDVFDSLPEASEDEEDMLDMAFGLSATSRLGCQVIVTDEMEGMEVNLPAATRNFYVDGHVPQPH 172
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BLAST of mRNA_M-pyrifera_M_contig83770.19559.1 vs. uniprot
Match: D8LDL2_ECTSI (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDL2_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 5.670e-46
Identity = 74/118 (62.71%), Postives = 93/118 (78.81%), Query Frame = 1 
Query:    7 SVSFQFTNAEGELMKEVSGEEGENLLEIAHREGIPMEGACEGVCACSTCHVILEDSVYDSLPEASEDEEDMLDIAPGLTLTSRLGCQVELDASMEGMEVRLPAVTRNFYVDGHVPQPH 360
            +V   + N +G  +K+ + + G NL+ +AH+ GI +EGACEGVCACSTCHVI+ + V+D LPEASEDEEDMLD+A GLT TSRLGCQV +   M+G+ V+LPA TRNFYVDGHVPQPH
Sbjct:   84 TVQITWENKDG--LKKTTAKCGMNLMRVAHKHGIDLEGACEGVCACSTCHVIMSNEVFDQLPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVVKLPAATRNFYVDGHVPQPH 199
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BLAST of mRNA_M-pyrifera_M_contig83770.19559.1 vs. uniprot
Match: A0A836C6V2_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6V2_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.190e-44
Identity = 74/118 (62.71%), Postives = 89/118 (75.42%), Query Frame = 1 
Query:    7 SVSFQFTNAEGELMKEVSGEEGENLLEIAHREGIPMEGACEGVCACSTCHVILEDSVYDSLPEASEDEEDMLDIAPGLTLTSRLGCQVELDASMEGMEVRLPAVTRNFYVDGHVPQPH 360
            +V+  + N  GE+ + V    G NL+ +AH+  I +EGACEGVCACSTCHVILED +Y +LPE SEDEEDMLD A GLT TSRLGCQV +   M+G+ V LPA TRNFYVDGHVP+PH
Sbjct:   68 NVTINWRNKHGEV-RTVDAPVGMNLMRVAHKHDIELEGACEGVCACSTCHVILEDDIYAALPEPSEDEEDMLDQAFGLTATSRLGCQVVVTPEMDGITVTLPAATRNFYVDGHVPKPH 184
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BLAST of mRNA_M-pyrifera_M_contig83770.19559.1 vs. uniprot
Match: A0A7S3V716_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V716_9STRA)

HSP 1 Score: 148 bits (373), Expect = 2.250e-43
Identity = 68/102 (66.67%), Postives = 79/102 (77.45%), Query Frame = 1 
Query:   55 VSGEEGENLLEIAHREGIPMEGACEGVCACSTCHVILEDSVYDSLPEASEDEEDMLDIAPGLTLTSRLGCQVELDASMEGMEVRLPAVTRNFYVDGHVPQPH 360
            V G  GE +L+ AHR  I +EGACEGVCACSTCHV++ D +YD L E SEDEEDMLD+A  LT TSRLGCQV L   M+G E+R+PA TRNFYVDGH+P PH
Sbjct:   53 VQGRIGETILQTAHRHDIDLEGACEGVCACSTCHVVMTDDLYDKLEEPSEDEEDMLDMAFALTTTSRLGCQVILSEKMKGSEIRVPAATRNFYVDGHIPVPH 154
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BLAST of mRNA_M-pyrifera_M_contig83770.19559.1 vs. uniprot
Match: A0A6T5LJJ2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5LJJ2_HETAK)

HSP 1 Score: 148 bits (374), Expect = 2.500e-43
Identity = 72/117 (61.54%), Postives = 87/117 (74.36%), Query Frame = 1 
Query:   10 VSFQFTNAEGELMKEVSGEEGENLLEIAHREGIPMEGACEGVCACSTCHVILEDSVYDSLPEASEDEEDMLDIAPGLTLTSRLGCQVELDASMEGMEVRLPAVTRNFYVDGHVPQPH 360
            VS  F + +G  M+ V    G N++ +AH   I +EGACEGV ACSTCHV+LE +++D L  ASE+EEDMLD APGLT TSRLGCQVE+   MEG  + LPA+TRNFYVDGHVPQPH
Sbjct:   55 VSLHFKSKKG--MQTVKARVGMNVMRVAHANNIELEGACEGVIACSTCHVVLEGALFDRLAAASEEEEDMLDQAPGLTPTSRLGCQVEVTEDMEGATITLPAITRNFYVDGHVPQPH 169
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BLAST of mRNA_M-pyrifera_M_contig83770.19559.1 vs. uniprot
Match: A0A7S1CBW9_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBW9_9STRA)

HSP 1 Score: 150 bits (379), Expect = 2.590e-43
Identity = 70/100 (70.00%), Postives = 83/100 (83.00%), Query Frame = 1 
Query:   61 GEEGENLLEIAHREGIPMEGACEGVCACSTCHVILEDSVYDSLPEASEDEEDMLDIAPGLTLTSRLGCQVELDASMEGMEVRLPAVTRNFYVDGHVPQPH 360
            G  G+NLL +A + G+ +EGACE   ACSTCHVILED V+DSLPEASEDE+D+LD+A GLT TSRLGCQV+L   ++GM V+LPA TRNFYVDGHVPQPH
Sbjct:  131 GNPGQNLLRLAQKFGVELEGACECSLACSTCHVILEDEVFDSLPEASEDEDDLLDMAFGLTATSRLGCQVKLTRDLDGMRVQLPAATRNFYVDGHVPQPH 230
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BLAST of mRNA_M-pyrifera_M_contig83770.19559.1 vs. uniprot
Match: A0A4D9D0M2_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0M2_9STRA)

HSP 1 Score: 147 bits (372), Expect = 5.180e-43
Identity = 66/97 (68.04%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:   70 GENLLEIAHREGIPMEGACEGVCACSTCHVILEDSVYDSLPEASEDEEDMLDIAPGLTLTSRLGCQVELDASMEGMEVRLPAVTRNFYVDGHVPQPH 360
            GE++LE AHR  + +EGACEGVCACSTCHVILE+ V++SL + SE+EEDMLD A GLT TSRLGCQVEL   M G++++LP+ TRNFY+DGHVP+PH
Sbjct:   74 GESILEAAHRHEVELEGACEGVCACSTCHVILEEPVFESLEDPSEEEEDMLDQAFGLTPTSRLGCQVELSQDMNGLKIKLPSATRNFYIDGHVPKPH 170
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BLAST of mRNA_M-pyrifera_M_contig83770.19559.1 vs. uniprot
Match: UPI001BB1D8FF (adrenodoxin-like protein 1, mitochondrial n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1D8FF)

HSP 1 Score: 148 bits (373), Expect = 7.460e-43
Identity = 69/103 (66.99%), Postives = 82/103 (79.61%), Query Frame = 1 
Query:   52 EVSGEEGENLLEIAHREGIPMEGACEGVCACSTCHVILEDSVYDSLPEASEDEEDMLDIAPGLTLTSRLGCQVELDASMEGMEVRLPAVTRNFYVDGHVPQPH 360
            EV G+ G+N++ +AHR GI +EGACE   AC TCHVIL DS YD LPE++E+EEDMLD+AP LT TSRL CQ+ L   +EGMEV+LP  TRNFYVDGHVPQPH
Sbjct:   92 EVKGKVGDNVMYLAHRYGIEIEGACEASLACCTCHVILPDSYYDMLPESTEEEEDMLDLAPFLTSTSRLSCQIILSKELEGMEVQLPKATRNFYVDGHVPQPH 194
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BLAST of mRNA_M-pyrifera_M_contig83770.19559.1 vs. uniprot
Match: A0A1Z5K9M2_FISSO (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9M2_FISSO)

HSP 1 Score: 146 bits (369), Expect = 8.830e-43
Identity = 69/104 (66.35%), Postives = 81/104 (77.88%), Query Frame = 1 
Query:   49 KEVSGEEGENLLEIAHREGIPMEGACEGVCACSTCHVILEDSVYDSLPEASEDEEDMLDIAPGLTLTSRLGCQVELDASMEGMEVRLPAVTRNFYVDGHVPQPH 360
            KEV    GE+LL+ AHR  I +EGACEGVCACSTCH+I+   +YD LP+ SEDEEDMLD+A GLT TSRLGCQV +   MEG E ++PA TRNFYVDGH P+PH
Sbjct:   50 KEVQARVGESLLQTAHRNEIDLEGACEGVCACSTCHLIMPQDLYDILPDPSEDEEDMLDMAFGLTDTSRLGCQVIVTKDMEGTEFKMPAATRNFYVDGHKPKPH 153
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BLAST of mRNA_M-pyrifera_M_contig83770.19559.1 vs. uniprot
Match: A0A2A9ML45_9APIC (Putative adrenodoxin-type ferredoxin n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9ML45_9APIC)

HSP 1 Score: 147 bits (372), Expect = 9.680e-43
Identity = 65/104 (62.50%), Postives = 82/104 (78.85%), Query Frame = 1 
Query:   49 KEVSGEEGENLLEIAHREGIPMEGACEGVCACSTCHVILEDSVYDSLPEASEDEEDMLDIAPGLTLTSRLGCQVELDASMEGMEVRLPAVTRNFYVDGHVPQPH 360
            K V  + G+ +LE+AH   IP+EGACEG C+CSTCHVIL+ ++YD LPE SEDEEDMLD+A  LT TSRLGCQ+ +   ++G ++RLP +TRNFYVDGHVP PH
Sbjct:   88 KSVQAKIGDTILEVAHANDIPLEGACEGSCSCSTCHVILDQTLYDELPEPSEDEEDMLDLAACLTPTSRLGCQIHITPDLDGAKIRLPQLTRNFYVDGHVPSPH 191
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83770.19559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6U3SGD3_9STRA2.660e-4875.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
D8LDL2_ECTSI5.670e-4662.712Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A836C6V2_9STRA1.190e-4462.712Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S3V716_9STRA2.250e-4366.67Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6T5LJJ2_HETAK2.500e-4361.54Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1CBW9_9STRA2.590e-4370.00Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A4D9D0M2_9STRA5.180e-4368.042Fe-2S ferredoxin-type domain-containing protein n... [more]
UPI001BB1D8FF7.460e-4366.99adrenodoxin-like protein 1, mitochondrial n=1 Tax=... [more]
A0A1Z5K9M2_FISSO8.830e-4366.352Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A2A9ML45_9APIC9.680e-4362.50Putative adrenodoxin-type ferredoxin n=1 Tax=Besno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83770contigM-pyrifera_M_contig83770:223..585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.0
Seed ortholog evalue1.1e-35
Seed eggNOG ortholog2880.D8LDL2
Preferred nameFDX1L
KEGG koko:K22071
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006091,GO:0006629,GO:0006694,GO:0006700,GO:0006790,GO:0007553,GO:0007554,GO:0008150,GO:0008152,GO:0008202,GO:0008207,GO:0008610,GO:0009055,GO:0009058,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010565,GO:0010566,GO:0010817,GO:0010893,GO:0016043,GO:0016125,GO:0016226,GO:0016491,GO:0019216,GO:0019218,GO:0019222,GO:0022607,GO:0022900,GO:0031163,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0032350,GO:0032352,GO:0034754,GO:0042445,GO:0042446,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045834,GO:0045940,GO:0045966,GO:0045998,GO:0046885,GO:0046886,GO:0046889,GO:0046890,GO:0048037,GO:0048518,GO:0048522,GO:0048580,GO:0048582,GO:0050789,GO:0050793,GO:0050794,GO:0050810,GO:0051094,GO:0051186,GO:0051239,GO:0051240,GO:0051536,GO:0051537,GO:0051540,GO:0055114,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090030,GO:0090031,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:2000026
EggNOG free text desc.2 iron, 2 sulfur cluster binding
EggNOG OGsCOG0633@1,KOG3309@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons1
Model size363
Cds size363
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816745.5981665-CDS-M-pyrifera_M_contig83770:222..5851622816745.5981665-CDS-M-pyrifera_M_contig83770:222..585Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83770 223..585 -
1692278153.208267-CDS-M-pyrifera_M_contig83770:222..5851692278153.208267-CDS-M-pyrifera_M_contig83770:222..585Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83770 223..585 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83770.19559.1prot_M-pyrifera_M_contig83770.19559.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83770 223..585 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83770.19559.1

>prot_M-pyrifera_M_contig83770.19559.1 ID=prot_M-pyrifera_M_contig83770.19559.1|Name=mRNA_M-pyrifera_M_contig83770.19559.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
MASVSFQFTNAEGELMKEVSGEEGENLLEIAHREGIPMEGACEGVCACST
CHVILEDSVYDSLPEASEDEEDMLDIAPGLTLTSRLGCQVELDASMEGME
VRLPAVTRNFYVDGHVPQPH*
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mRNA from alignment at M-pyrifera_M_contig83770:223..585-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83770.19559.1 ID=mRNA_M-pyrifera_M_contig83770.19559.1|Name=mRNA_M-pyrifera_M_contig83770.19559.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig83770:223..585- (Macrocystis pyrifera P11B4 male)
ATGGCAAGTGTGTCATTTCAGTTTACGAATGCGGAAGGTGAGTTGATGAA
GGAGGTTAGTGGGGAAGAAGGTGAGAATTTGCTAGAAATTGCACACCGCG
AAGGCATTCCGATGGAAGGAGCCTGTGAAGGGGTATGTGCATGCTCTACA
TGTCATGTAATTCTTGAAGACTCGGTGTATGACTCACTTCCAGAAGCGAG
TGAAGACGAAGAAGACATGCTAGACATTGCGCCAGGTCTTACGCTCACTT
CTAGACTAGGCTGTCAAGTTGAACTCGATGCAAGCATGGAAGGTATGGAA
GTACGTCTTCCAGCTGTCACAAGAAACTTTTATGTTGATGGACACGTCCC
ACAACCGCATTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83770:223..585-

>mRNA_M-pyrifera_M_contig83770.19559.1 ID=mRNA_M-pyrifera_M_contig83770.19559.1|Name=mRNA_M-pyrifera_M_contig83770.19559.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig83770:223..585- (Macrocystis pyrifera P11B4 male)
ATGGCAAGTGTGTCATTTCAGTTTACGAATGCGGAAGGTGAGTTGATGAA
GGAGGTTAGTGGGGAAGAAGGTGAGAATTTGCTAGAAATTGCACACCGCG
AAGGCATTCCGATGGAAGGAGCCTGTGAAGGGGTATGTGCATGCTCTACA
TGTCATGTAATTCTTGAAGACTCGGTGTATGACTCACTTCCAGAAGCGAG
TGAAGACGAAGAAGACATGCTAGACATTGCGCCAGGTCTTACGCTCACTT
CTAGACTAGGCTGTCAAGTTGAACTCGATGCAAGCATGGAAGGTATGGAA
GTACGTCTTCCAGCTGTCACAAGAAACTTTTATGTTGATGGACACGTCCC
ACAACCGCATTAAATGGCAAGTGTGTCATTTCAGTTTACGAATGCGGAAG
GTGAGTTGATGAAGGAGGTTAGTGGGGAAGAAGGTGAGAATTTGCTAGAA
ATTGCACACCGCGAAGGCATTCCGATGGAAGGAGCCTGTGAAGGGGTATG
TGCATGCTCTACATGTCATGTAATTCTTGAAGACTCGGTGTATGACTCAC
TTCCAGAAGCGAGTGAAGACGAAGAAGACATGCTAGACATTGCGCCAGGT
CTTACGCTCACTTCTAGACTAGGCTGTCAAGTTGAACTCGATGCAAGCAT
GGAAGGTATGGAAGTACGTCTTCCAGCTGTCACAAGAAACTTTTATGTTG
ATGGACACGTCCCACAACCGCATTAA
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