mRNA_M-pyrifera_M_contig83744.19551.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83744.19551.1
Unique NamemRNA_M-pyrifera_M_contig83744.19551.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig83744.19551.1 vs. uniprot
Match: A0A2P6VBF2_9CHLO (ATP synthase mitochondrial F1 complex assembly factor 2 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VBF2_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 2.830e-9
Identity = 30/68 (44.12%), Postives = 42/68 (61.76%), Query Frame = 1
Query:    7 GTCRSLVIALAAMDHFITVDEAVTACRLEESFQLARNGSVIAGHDLDIADTRVRFASAAFFTHMVRRH 210
            G C+S+++ LA     + V+ AV A RLEE  Q+   G V  GHD+DIAD RVR A+ + F  ++ RH
Sbjct:  145 GACKSVLLGLAGAAQHLGVEAAVAAARLEEDKQIEEWGFVEGGHDIDIADLRVRVAAPSVFLRLLHRH 212          
BLAST of mRNA_M-pyrifera_M_contig83744.19551.1 vs. uniprot
Match: E1ZIG5_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZIG5_CHLVA)

HSP 1 Score: 60.5 bits (145), Expect = 5.210e-9
Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 1
Query:    1 MTGTCRSLVIALAAMDHFITVDEAVTACRLEESFQLARNGSVIAGHDLDIADTRVRFASAAFFTHMVRRH 210
            +   C+S+++ LAA    +++++ + A RLEE  Q+ R G V  GHD+DIAD RVR A+   F  ++R H
Sbjct:  215 LAAYCKSVLLGLAATAQALSIEQVLAAARLEEDHQIERWGLVEGGHDIDIADLRVRVAAPCLFVRLLRWH 284          
BLAST of mRNA_M-pyrifera_M_contig83744.19551.1 vs. uniprot
Match: A0A388KH30_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KH30_CHABU)

HSP 1 Score: 59.7 bits (143), Expect = 1.190e-8
Identity = 30/68 (44.12%), Postives = 42/68 (61.76%), Query Frame = 1
Query:    1 MTGTCRSLVIALAAMDHFITVDEAVTACRLEESFQLARNGSVIAGHDLDIADTRVRFASAAFFTHMVR 204
            + G  RSL+IALA   + ++V  AV   RLEE FQ+   G V  GHDLD+AD +VR  + + F  ++R
Sbjct:  271 LAGAARSLIIALAVSHNRLSVSSAVKLARLEEDFQVEEWGFVEGGHDLDLADMKVRITAPSIFLRLLR 338          
BLAST of mRNA_M-pyrifera_M_contig83744.19551.1 vs. uniprot
Match: A0A1D1ZW25_AUXPR (Uncharacterized protein (Fragment) n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZW25_AUXPR)

HSP 1 Score: 58.9 bits (141), Expect = 2.280e-8
Identity = 29/68 (42.65%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 MTGTCRSLVIALAAMDHFITVDEAVTACRLEESFQLARNGSVIAGHDLDIADTRVRFASAAFFTHMVR 204
            +   CRS+++A A ++  + V +A+   RLEES Q+A+ G V  GHD+DIAD RVR A+ + F  ++R
Sbjct:  285 LAACCRSVLLACAVVEGEVGVPDALAVARLEESAQIAQWGLVEGGHDIDIADLRVRVAAPSVFLRLLR 352          
BLAST of mRNA_M-pyrifera_M_contig83744.19551.1 vs. uniprot
Match: UPI001EE577CF (ATP synthase mitochondrial F1 complex assembly factor 2-like isoform X1 n=3 Tax=Haliotis TaxID=6452 RepID=UPI001EE577CF)

HSP 1 Score: 57.8 bits (138), Expect = 5.020e-8
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 1
Query:   16 RSLVIALAAMDHFITVDEAVTACRLEESFQLARNGSVIAGHDLDIADTRVRFASAAFFTH 195
            +SL+I +A MD FITV+ AV   RLE+ +Q  R GSV   HD+D+ + R R A+A  F H
Sbjct:  212 KSLLITMALMDRFITVERAVDLARLEQQYQTQRWGSVEWYHDIDMLELRTRMAAATLFVH 271          
BLAST of mRNA_M-pyrifera_M_contig83744.19551.1 vs. uniprot
Match: A0A2P6U052_CHLSO (ATP synthase mitochondrial F1 complex assembly factor 2 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U052_CHLSO)

HSP 1 Score: 57.4 bits (137), Expect = 6.950e-8
Identity = 26/70 (37.14%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 MTGTCRSLVIALAAMDHFITVDEAVTACRLEESFQLARNGSVIAGHDLDIADTRVRFASAAFFTHMVRRH 210
            +   C+S+++ LAA    +++ + ++A R EE  Q+ + G V  GHD+DIAD +VR A+ A F  ++RR+
Sbjct:  219 LAACCKSVLLGLAATAGELSIQQVLSAARAEEDLQIEQWGLVEGGHDIDIADLKVRVAAPALFVRLLRRY 288          
BLAST of mRNA_M-pyrifera_M_contig83744.19551.1 vs. uniprot
Match: A0A7S3BRI0_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BRI0_9VIRI)

HSP 1 Score: 56.6 bits (135), Expect = 1.360e-7
Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    1 MTGTCRSLVIALAAMDHFITVDEAVTACRLEESFQLARNGSVIAGHDLDIADTRVRFASAAFFTHMVRRHSAK 219
            ++   RSL +ALA     +T  EAV   RL+E +Q+   G V  GHD+DIADT+VR  +AA F  ++R   A+
Sbjct:  225 LSAAGRSLSLALAVARGRLTAAEAVPLMRLDEEYQIQEWGLVEGGHDIDIADTKVRVGAAAVFLKLLRHERAE 297          
BLAST of mRNA_M-pyrifera_M_contig83744.19551.1 vs. uniprot
Match: UPI000719C590 (ATP synthase mitochondrial F1 complex assembly factor 2-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719C590)

HSP 1 Score: 54.3 bits (129), Expect = 2.920e-7
Identity = 26/61 (42.62%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   16 RSLVIALAAMDHFITVDEAVTACRLEESFQLARNGSVIAGHDLDIADTRVRFASAAFFTHM 198
            +S+VI+LA +D F++V++AV   RLE  FQ+++ G+V   HD++  +T+ R A+A  F HM
Sbjct:   82 KSVVISLALIDKFVSVEQAVYFSRLECEFQISKWGNVEEAHDMEKTETQARAAAATLFVHM 142          
BLAST of mRNA_M-pyrifera_M_contig83744.19551.1 vs. uniprot
Match: A0A7R9TP43_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TP43_9VIRI)

HSP 1 Score: 53.9 bits (128), Expect = 1.140e-6
Identity = 26/67 (38.81%), Postives = 42/67 (62.69%), Query Frame = 1
Query:    1 MTGTCRSLVIALAAMDHFITVDEAVTACRLEESFQLARNGSVIAGHDLDIADTRVRFASAAFFTHMV 201
            ++   RS+ +ALA  +  +TV EA+   R +E +Q+A  G V  GHD+DIADT+VR  + + F  ++
Sbjct:  190 LSAAGRSVTLALAVSEGRLTVREAIPLMRFDEEYQIAEWGLVEGGHDIDIADTKVRIGAGSVFLKLL 256          
BLAST of mRNA_M-pyrifera_M_contig83744.19551.1 vs. uniprot
Match: A0A8J5DIG2_9DIPT (Uncharacterized protein n=2 Tax=Bradysia TaxID=35571 RepID=A0A8J5DIG2_9DIPT)

HSP 1 Score: 53.9 bits (128), Expect = 1.180e-6
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query:   16 RSLVIALAAMDHFITVDEAVTACRLEESFQLARNGSVIAGHDLDIADTRVRFASAAFFTH 195
            +S+V+A A +D FITV++AV   RLEE FQ+   G V   HDL   D + R A+A  F H
Sbjct:  201 KSMVLAFACIDRFITVEQAVKLSRLEEEFQITHWGRVEWAHDLAQQDHQARLAAAVLFIH 260          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83744.19551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A2P6VBF2_9CHLO2.830e-944.12ATP synthase mitochondrial F1 complex assembly fac... [more]
E1ZIG5_CHLVA5.210e-940.00Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A388KH30_CHABU1.190e-844.12Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A1D1ZW25_AUXPR2.280e-842.65Uncharacterized protein (Fragment) n=3 Tax=Auxenoc... [more]
UPI001EE577CF5.020e-848.33ATP synthase mitochondrial F1 complex assembly fac... [more]
A0A2P6U052_CHLSO6.950e-837.14ATP synthase mitochondrial F1 complex assembly fac... [more]
A0A7S3BRI0_9VIRI1.360e-742.47Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
UPI000719C5902.920e-742.62ATP synthase mitochondrial F1 complex assembly fac... [more]
A0A7R9TP43_9VIRI1.140e-638.81Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A8J5DIG2_9DIPT1.180e-646.67Uncharacterized protein n=2 Tax=Bradysia TaxID=355... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83744contigM-pyrifera_M_contig83744:647..880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score65.5
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog88036.EFJ19016
KEGG koko:K07556
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0008150,GO:0009987,GO:0016043,GO:0016604,GO:0016607,GO:0022607,GO:0031974,GO:0031981,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043461,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0065003,GO:0070013,GO:0070071,GO:0071840
EggNOG free text desc.ATP synthase mitochondrial F1 complex assembly factor
EggNOG OGs37S0M@33090,3G8QW@35493,COG5387@1,KOG3015@2759
Ec32 ortholog descriptionsimilar to ATP synthase mitochondrial F1 complex assembly factor 2
Ec32 orthologEc-23_000930.1
COG Functional cat.C
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons1
Model size234
Cds size234
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816745.1469207-CDS-M-pyrifera_M_contig83744:646..8801622816745.1469207-CDS-M-pyrifera_M_contig83744:646..880Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83744 647..880 -
1692278152.9652681-CDS-M-pyrifera_M_contig83744:646..8801692278152.9652681-CDS-M-pyrifera_M_contig83744:646..880Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83744 647..880 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83744.19551.1prot_M-pyrifera_M_contig83744.19551.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83744 647..880 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83744.19551.1

>prot_M-pyrifera_M_contig83744.19551.1 ID=prot_M-pyrifera_M_contig83744.19551.1|Name=mRNA_M-pyrifera_M_contig83744.19551.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
MTGTCRSLVIALAAMDHFITVDEAVTACRLEESFQLARNGSVIAGHDLDI
ADTRVRFASAAFFTHMVRRHSAKAASS*
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mRNA from alignment at M-pyrifera_M_contig83744:647..880-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83744.19551.1 ID=mRNA_M-pyrifera_M_contig83744.19551.1|Name=mRNA_M-pyrifera_M_contig83744.19551.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig83744:647..880- (Macrocystis pyrifera P11B4 male)
ATGACTGGTACCTGCAGATCGCTGGTGATTGCCTTGGCTGCCATGGATCA CTTCATCACCGTTGACGAGGCTGTGACTGCGTGCCGCCTCGAAGAGTCCT TCCAGTTGGCAAGGAACGGCTCAGTGATAGCAGGCCACGACCTTGACATC GCTGACACGCGCGTGAGGTTTGCCTCGGCCGCCTTTTTCACTCACATGGT GAGGAGGCACTCTGCCAAAGCAGCTAGCTCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83744:647..880-

>mRNA_M-pyrifera_M_contig83744.19551.1 ID=mRNA_M-pyrifera_M_contig83744.19551.1|Name=mRNA_M-pyrifera_M_contig83744.19551.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig83744:647..880- (Macrocystis pyrifera P11B4 male)
ATGACTGGTACCTGCAGATCGCTGGTGATTGCCTTGGCTGCCATGGATCA
CTTCATCACCGTTGACGAGGCTGTGACTGCGTGCCGCCTCGAAGAGTCCT
TCCAGTTGGCAAGGAACGGCTCAGTGATAGCAGGCCACGACCTTGACATC
GCTGACACGCGCGTGAGGTTTGCCTCGGCCGCCTTTTTCACTCACATGGT
GAGGAGGCACTCTGCCAAAGCAGCTAGCTCGTGAATGACTGGTACCTGCA
GATCGCTGGTGATTGCCTTGGCTGCCATGGATCACTTCATCACCGTTGAC
GAGGCTGTGACTGCGTGCCGCCTCGAAGAGTCCTTCCAGTTGGCAAGGAA
CGGCTCAGTGATAGCAGGCCACGACCTTGACATCGCTGACACGCGCGTGA
GGTTTGCCTCGGCCGCCTTTTTCACTCACATGGTGAGGAGGCACTCTGCC
AAAGCAGCTAGCTCGTGA
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