mRNA_M-pyrifera_M_contig8367.19542.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8367.19542.1
Unique NamemRNA_M-pyrifera_M_contig8367.19542.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8367.19542.1 vs. uniprot
Match: A0A6H5JGI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGI5_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 3.600e-16
Identity = 42/62 (67.74%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    4 PHGSDLAGAGSLAAVLATPEVLEAAAVVALLGGVIAWALNFATGAIGSVLDARSDSSPEDDD 189
            P G DL GAGSLAA+LATPEVLEAAAV+ALLGG   WALNFATGA+G+++  +S SS E+++
Sbjct:  285 PKGLDLTGAGSLAALLATPEVLEAAAVIALLGGTAIWALNFATGAVGALMPGQSKSSREEEE 346
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8367.19542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGI5_9PHAE3.600e-1667.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8367contigM-pyrifera_M_contig8367:10185..10439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size256
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816744.5657897-CDS-M-pyrifera_M_contig8367:10184..103821622816744.5657897-CDS-M-pyrifera_M_contig8367:10184..10382Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8367 10185..10382 +
1692278152.549162-CDS-M-pyrifera_M_contig8367:10184..103821692278152.549162-CDS-M-pyrifera_M_contig8367:10184..10382Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8367 10185..10382 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816744.5768542-UTR-M-pyrifera_M_contig8367:10382..104391622816744.5768542-UTR-M-pyrifera_M_contig8367:10382..10439Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8367 10383..10439 +
1692278152.5593233-UTR-M-pyrifera_M_contig8367:10382..104391692278152.5593233-UTR-M-pyrifera_M_contig8367:10382..10439Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8367 10383..10439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8367.19542.1prot_M-pyrifera_M_contig8367.19542.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8367 10185..10382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8367.19542.1

>prot_M-pyrifera_M_contig8367.19542.1 ID=prot_M-pyrifera_M_contig8367.19542.1|Name=mRNA_M-pyrifera_M_contig8367.19542.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
LPHGSDLAGAGSLAAVLATPEVLEAAAVVALLGGVIAWALNFATGAIGSV
LDARSDSSPEDDDFT*
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mRNA from alignment at M-pyrifera_M_contig8367:10185..10439+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8367.19542.1 ID=mRNA_M-pyrifera_M_contig8367.19542.1|Name=mRNA_M-pyrifera_M_contig8367.19542.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig8367:10185..10439+ (Macrocystis pyrifera P11B4 male)
TTGCCGCACGGGTCTGATTTGGCGGGAGCGGGGTCTCTTGCGGCTGTACT
TGCCACTCCTGAGGTCCTGGAGGCCGCAGCGGTTGTGGCGCTGTTGGGTG
GTGTAATCGCTTGGGCCCTCAACTTTGCCACGGGGGCGATAGGGTCGGTA
CTCGATGCGCGAAGCGATTCCTCGCCTGAGGACGACGATTTTACATGAAC
TACTCGCATACGTACCGGTGTTTTTTTTATGTGTTTTTAAAGTTGTGCGT
GTTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8367:10185..10439+

>mRNA_M-pyrifera_M_contig8367.19542.1 ID=mRNA_M-pyrifera_M_contig8367.19542.1|Name=mRNA_M-pyrifera_M_contig8367.19542.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig8367:10185..10439+ (Macrocystis pyrifera P11B4 male)
TTGCCGCACGGGTCTGATTTGGCGGGAGCGGGGTCTCTTGCGGCTGTACT
TGCCACTCCTGAGGTCCTGGAGGCCGCAGCGGTTGTGGCGCTGTTGGGTG
GTGTAATCGCTTGGGCCCTCAACTTTGCCACGGGGGCGATAGGGTCGGTA
CTCGATGCGCGAAGCGATTCCTCGCCTGAGGACGACGATTTTACATGATT
GCCGCACGGGTCTGATTTGGCGGGAGCGGGGTCTCTTGCGGCTGTACTTG
CCACTCCTGAGGTCCTGGAGGCCGCAGCGGTTGTGGCGCTGTTGGGTGGT
GTAATCGCTTGGGCCCTCAACTTTGCCACGGGGGCGATAGGGTCGGTACT
CGATGCGCGAAGCGATTCCTCGCCTGAGGACGACGATTTTACATGA
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