mRNA_M-pyrifera_M_contig83635.19536.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83635.19536.1
Unique NamemRNA_M-pyrifera_M_contig83635.19536.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig83635.19536.1 vs. uniprot
Match: A0A3R6YYL3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YYL3_9STRA)

HSP 1 Score: 100 bits (250), Expect = 7.290e-22
Identity = 52/145 (35.86%), Postives = 77/145 (53.10%), Query Frame = 1
Query:   19 SITQGGRRIQCRTHSTTVCAINEPMKSGRWKITFRLHEDTPDSETSCFGILTLPCMGQSY-SGENKWFIRSFNGQLYGVGAEGSTHRLRIHPGNNVVLDIDVDAGTFRYSVDGTDAGIAFRIPPGRTYYAATAFYSSLPNIELLS 450
            +I  GG  ++ R  S     +N P+ +G+    FRL  DT D E +CFG   LP     Y S  + W +R +NG LY  G + S    ++HPG+ V +D+D++ GT  Y+++ T+ G+ F    G   Y A +FY S   I LLS
Sbjct:  530 TIEDGGATVRTRETSYQHAVVNSPISTGKASWKFRLDTDTTDDEMTCFGAAILPVTVSGYDSSPSLWMLRGYNGNLYARGHKLSRSIGKVHPGDVVQIDVDMNVGTMSYTINTTEFGVVFTDLSGHEVYPAVSFYGSGKVITLLS 674          
BLAST of mRNA_M-pyrifera_M_contig83635.19536.1 vs. uniprot
Match: A0A6A4Y3Q0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4Y3Q0_9STRA)

HSP 1 Score: 100 bits (250), Expect = 7.310e-22
Identity = 52/145 (35.86%), Postives = 78/145 (53.79%), Query Frame = 1
Query:   19 SITQGGRRIQCRTHSTTVCAINEPMKSGRWKITFRLHEDTPDSETSCFGILTLPCMGQSY-SGENKWFIRSFNGQLYGVGAEGSTHRLRIHPGNNVVLDIDVDAGTFRYSVDGTDAGIAFRIPPGRTYYAATAFYSSLPNIELLS 450
            +I  GG+ ++ R  S     +N P+ +G+    FRL  DT D E +CFG   LP     Y S  + W +R +NG LY  G + S    ++HPG+ V +D+D++ GT  Y+++ T+ G+ F    G   Y A +FY S   I LLS
Sbjct:  521 TIEDGGQTVRTRETSYQHAIVNAPIATGKASWKFRLDTDTVDDEMTCFGAAILPVTVSGYDSSPSLWMLRGYNGNLYARGHKLSRSIGKVHPGDVVQIDVDMNVGTMSYTINATEYGVVFSDLSGHEVYPAVSFYGSGKVITLLS 665          
BLAST of mRNA_M-pyrifera_M_contig83635.19536.1 vs. uniprot
Match: A0A024UQY4_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQY4_9STRA)

HSP 1 Score: 100 bits (250), Expect = 7.370e-22
Identity = 52/145 (35.86%), Postives = 77/145 (53.10%), Query Frame = 1
Query:   19 SITQGGRRIQCRTHSTTVCAINEPMKSGRWKITFRLHEDTPDSETSCFGILTLPCMGQSY-SGENKWFIRSFNGQLYGVGAEGSTHRLRIHPGNNVVLDIDVDAGTFRYSVDGTDAGIAFRIPPGRTYYAATAFYSSLPNIELLS 450
            +I  GG  ++ R  S     +N P+ +G+    FRL  DT D E +CFG   LP     Y S  + W +R +NG LY  G + S    ++HPG+ V +D+D++ GT  Y+++ T+ G+ F    G   Y A +FY S   I LLS
Sbjct:  530 TIEDGGATVRTRETSYQHAVVNSPISTGKASWKFRLDTDTTDDEMTCFGAAILPVTVSGYDSSPSLWMLRGYNGNLYARGHKLSRSIGKVHPGDVVQIDVDMNVGTMSYTINTTEFGVVFTDLSGHEVYPAVSFYGSGKVITLLS 674          
BLAST of mRNA_M-pyrifera_M_contig83635.19536.1 vs. uniprot
Match: W4H3C5_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H3C5_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 4.730e-21
Identity = 51/145 (35.17%), Postives = 76/145 (52.41%), Query Frame = 1
Query:   19 SITQGGRRIQCRTHSTTVCAINEPMKSGRWKITFRLHEDTPDSETSCFGILTLPCMGQSY-SGENKWFIRSFNGQLYGVGAEGSTHRLRIHPGNNVVLDIDVDAGTFRYSVDGTDAGIAFRIPPGRTYYAATAFYSSLPNIELLS 450
            +I  GG  ++ R  S     +N P+ +G+    FRL  DT D E +CFG   LP     Y S  N W +R +NG LY  G + S    ++HPG+ V +D+D++ GT  ++++ T+ G+ F    G   Y A +FY S   I L S
Sbjct:  546 TIEDGGASVRTRETSYQHAVVNSPISTGKASWRFRLDTDTVDDEMTCFGAAILPVTISGYDSSPNLWMLRGYNGNLYARGHKLSRSIGKVHPGDVVQIDVDMNVGTMSFAINATEYGVVFTDLGGHEVYPAVSFYGSGKVITLQS 690          
BLAST of mRNA_M-pyrifera_M_contig83635.19536.1 vs. uniprot
Match: A0A662Y1J4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1J4_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 4.140e-20
Identity = 50/143 (34.97%), Postives = 75/143 (52.45%), Query Frame = 1
Query:   22 ITQGGRRIQCRTHSTTVCAINEPMKSGRWKITFRLHEDTPDSETSCFGILTLPCMGQSY-SGENKWFIRSFNGQLYGVGAEGSTHRLRIHPGNNVVLDIDVDAGTFRYSVDGTDAGIAFRIPPGRTYYAATAFYSSLPNIELL 447
            +  GG  ++ R  S    A+N  + SG+    FRL  DT D E +CFG   LP     Y S  + W +R +NG LY  G + S    ++HPG+ + +D+D++ GT  Y ++GT+ G+ F    G   + A +FY S   I LL
Sbjct:  683 VEDGGLVVRTRETSYQYAAVNCGVSSGKASWKFRLDTDTQDDEMTCFGAAILPVTVNGYDSSPSLWMLRGYNGNLYARGHKLSRSIGKVHPGDIIQIDVDMNEGTLAYKINGTEHGVVFTDLAGHEVHPAVSFYGSGKVITLL 825          
BLAST of mRNA_M-pyrifera_M_contig83635.19536.1 vs. uniprot
Match: A0A2D4BQ93_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQ93_PYTIN)

HSP 1 Score: 86.7 bits (213), Expect = 6.360e-17
Identity = 50/144 (34.72%), Postives = 69/144 (47.92%), Query Frame = 1
Query:   19 SITQGGRRIQCRTHSTTVCAINEPMKSGRWKITFRLHEDTPDSETSCFGILTLPCMGQSY-SGENKWFIRSFNGQLYGVGAEGSTHRLRIHPGNNVVLDIDVDAGTFRYSVDGTDAGIAFRIPPGRTYYAATAFYSSLPNIELL 447
            SI  GG  ++ R  S    A+N  + +GR    FRL  DT D E +CFG   LP     Y S  N W +R  N  +            ++HPG+ V +D+D++ GT  Y ++  D G+AF    G   Y A +FY S   I LL
Sbjct:  497 SIEDGGCAVRTRETSYQYAAVNIGVSTGRASWKFRLDNDTVDDEMTCFGAAILPVTVSGYDSSPNLWMLRGLNRSIG-----------KVHPGDIVQVDVDMNEGTLAYKINDVDHGVAFTDLSGHEVYPAVSFYGSGKVITLL 629          
BLAST of mRNA_M-pyrifera_M_contig83635.19536.1 vs. uniprot
Match: D7FVC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVC4_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.590e-13
Identity = 47/147 (31.97%), Postives = 74/147 (50.34%), Query Frame = 1
Query:   16 FSITQGGRRIQCRTHSTTVCAINEPMKSGRWKITFRLHEDTPDSETSCFGILTLPCMGQSY-SGENKWFIRSFNGQLYGVGAE--GSTHRLRIHPGNNVVLDIDVDAGTFRYSVDGTDAGIAFRIPPGRTYYAATAFYSSLPNIELL 447
            FSI++ G+     T + T   ++  +  G+    F L +D+P  E S FGI T P   + Y S ++ W  R++NG LY  G +        +IHPG+ V  ++D+D GT R+SV+G      F    G  +  A ++ S +  I LL
Sbjct: 1280 FSISEDGQLYSALTSNNTCALLDVGVSHGKAAWEFVLEDDSPSDECSVFGIATKPPYSRCYNSSQSLWMRRAYNGVLYNRGRQLPAGQSMSKIHPGDVVRCEVDMDEGTLRFSVNGEKQDGGFDDVEGEVFPCAGSYRSGV-TIRLL 1425          
BLAST of mRNA_M-pyrifera_M_contig83635.19536.1 vs. uniprot
Match: A0A6H5KD94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD94_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.040e-10
Identity = 37/112 (33.04%), Postives = 59/112 (52.68%), Query Frame = 1
Query:   16 FSITQGGRRIQCRTHSTTVCAINEPMKSGRWKITFRLHEDTPDSETSCFGILTLPCMGQSY-SGENKWFIRSFNGQLYGVGAE--GSTHRLRIHPGNNVVLDIDVDAGTFRY 342
            FSI++ G+     T + T   ++  +  G+    F L +D+P  E S FGI T P   + Y S ++ W  R++NG LY  G +        +IHPG+ V  ++D+D GT R+
Sbjct: 1187 FSISEDGQLYSALTSNNTCALLDVGVSHGKAAWEFLLEDDSPSDECSVFGIATRPPYSRCYNSSQSLWMRRAYNGVLYNRGRQLPAGQSMSKIHPGDVVRCEVDMDEGTLRF 1298          
BLAST of mRNA_M-pyrifera_M_contig83635.19536.1 vs. uniprot
Match: A0A835YMS0_9STRA (B30.2/SPRY domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMS0_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 5.560e-8
Identity = 37/116 (31.90%), Postives = 57/116 (49.14%), Query Frame = 1
Query:   79 INEPMKSGRWKITFRLHEDTPDSETSCFGILTLPCMGQSY-SGENKWFIRSFNGQLYGVGAEGSTHRL--RIHPGNNVVLDIDVDAGTFRYSVDGTDAGIAFRIPPGRTYYAATAF 417
            +N  + +GR    F L  D+   E S FG    P   + Y S  + W  R++NG LY  G +  + R   +IHPG+ V  ++D+D GT R++V+G      F    G  Y  A ++
Sbjct:    1 VNVCVSAGRAAWEFLLDADSATDECSVFGAAAKPLHSRCYNSSPSLWMRRAYNGVLYCRGRQLPSSRTMSKIHPGDVVRCELDMDEGTLRFAVNGEAQDGGFDGIEGEVYPCAGSY 116          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83635.19536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A3R6YYL3_9STRA7.290e-2235.86Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A6A4Y3Q0_9STRA7.310e-2235.86Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A024UQY4_9STRA7.370e-2235.86Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]
W4H3C5_9STRA4.730e-2135.17Uncharacterized protein n=8 Tax=Aphanomyces astaci... [more]
A0A662Y1J4_9STRA4.140e-2034.97Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A2D4BQ93_PYTIN6.360e-1734.72Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
D7FVC4_ECTSI1.590e-1331.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD94_9PHAE1.040e-1033.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YMS0_9STRA5.560e-831.90B30.2/SPRY domain-containing protein (Fragment) n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83635contigM-pyrifera_M_contig83635:258..707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue3.9e-22
Seed eggNOG ortholog112098.XP_008615989.1
KEGG rclassRC00017
KEGG koko:K05288
KEGG ReactionR05923,R08107
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size450
Cds size450
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816744.017028-CDS-M-pyrifera_M_contig83635:257..7071622816744.017028-CDS-M-pyrifera_M_contig83635:257..707Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83635 258..707 -
1692278152.442107-CDS-M-pyrifera_M_contig83635:257..7071692278152.442107-CDS-M-pyrifera_M_contig83635:257..707Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83635 258..707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83635.19536.1prot_M-pyrifera_M_contig83635.19536.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83635 258..707 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83635.19536.1

>prot_M-pyrifera_M_contig83635.19536.1 ID=prot_M-pyrifera_M_contig83635.19536.1|Name=mRNA_M-pyrifera_M_contig83635.19536.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
MSPGDFSITQGGRRIQCRTHSTTVCAINEPMKSGRWKITFRLHEDTPDSE
TSCFGILTLPCMGQSYSGENKWFIRSFNGQLYGVGAEGSTHRLRIHPGNN
VVLDIDVDAGTFRYSVDGTDAGIAFRIPPGRTYYAATAFYSSLPNIELLS
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mRNA from alignment at M-pyrifera_M_contig83635:258..707-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83635.19536.1 ID=mRNA_M-pyrifera_M_contig83635.19536.1|Name=mRNA_M-pyrifera_M_contig83635.19536.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig83635:258..707- (Macrocystis pyrifera P11B4 male)
ATGTCACCAGGAGACTTTTCAATTACTCAAGGTGGACGACGGATTCAATG CCGCACACACTCTACCACCGTGTGTGCGATCAATGAACCCATGAAATCTG GTCGTTGGAAGATTACGTTCCGTCTGCATGAAGATACTCCAGACTCTGAA ACCTCTTGTTTTGGAATTTTGACTCTTCCTTGCATGGGTCAAAGTTACTC TGGAGAAAACAAGTGGTTTATTCGCTCTTTCAATGGACAATTGTATGGAG TTGGTGCAGAAGGTTCTACGCACCGCCTTCGAATTCATCCAGGCAACAAT GTTGTGTTGGATATTGATGTGGATGCAGGAACATTCCGTTATTCTGTGGA TGGCACAGATGCAGGCATTGCATTCCGTATCCCACCAGGGCGCACGTATT ATGCTGCAACAGCTTTCTATTCCTCACTCCCAAACATCGAACTCTTGTCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83635:258..707-

>mRNA_M-pyrifera_M_contig83635.19536.1 ID=mRNA_M-pyrifera_M_contig83635.19536.1|Name=mRNA_M-pyrifera_M_contig83635.19536.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig83635:258..707- (Macrocystis pyrifera P11B4 male)
ATGTCACCAGGAGACTTTTCAATTACTCAAGGTGGACGACGGATTCAATG
CCGCACACACTCTACCACCGTGTGTGCGATCAATGAACCCATGAAATCTG
GTCGTTGGAAGATTACGTTCCGTCTGCATGAAGATACTCCAGACTCTGAA
ACCTCTTGTTTTGGAATTTTGACTCTTCCTTGCATGGGTCAAAGTTACTC
TGGAGAAAACAAGTGGTTTATTCGCTCTTTCAATGGACAATTGTATGGAG
TTGGTGCAGAAGGTTCTACGCACCGCCTTCGAATTCATCCAGGCAACAAT
GTTGTGTTGGATATTGATGTGGATGCAGGAACATTCCGTTATTCTGTGGA
TGGCACAGATGCAGGCATTGCATTCCGTATCCCACCAGGGCGCACGTATT
ATGCTGCAACAGCTTTCTATTCCTCACTCCCAAACATCGAACTCTTGTCG
ATGTCACCAGGAGACTTTTCAATTACTCAAGGTGGACGACGGATTCAATG
CCGCACACACTCTACCACCGTGTGTGCGATCAATGAACCCATGAAATCTG
GTCGTTGGAAGATTACGTTCCGTCTGCATGAAGATACTCCAGACTCTGAA
ACCTCTTGTTTTGGAATTTTGACTCTTCCTTGCATGGGTCAAAGTTACTC
TGGAGAAAACAAGTGGTTTATTCGCTCTTTCAATGGACAATTGTATGGAG
TTGGTGCAGAAGGTTCTACGCACCGCCTTCGAATTCATCCAGGCAACAAT
GTTGTGTTGGATATTGATGTGGATGCAGGAACATTCCGTTATTCTGTGGA
TGGCACAGATGCAGGCATTGCATTCCGTATCCCACCAGGGCGCACGTATT
ATGCTGCAACAGCTTTCTATTCCTCACTCCCAAACATCGAACTCTTGTCG
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