mRNA_M-pyrifera_M_contig8361.19530.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8361.19530.1
Unique NamemRNA_M-pyrifera_M_contig8361.19530.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig8361.19530.1 vs. uniprot
Match: A0A6H5JP15_9PHAE (Proteasome subunit alpha type n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP15_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.780e-36
Identity = 60/97 (61.86%), Postives = 79/97 (81.44%), Query Frame = 2
Query:    5 LVMDVGTRKIARVSDGVVVSYAGLGADSRVLTMKAQECCLGYRGKFGNDAVVPIGTLVSEMAMLMQEYTQMGGVRPFGVALLVASVEVDEGTRLYRL 295
            LV+D+ TRKIAR+SDG+ + ++GL AD+R+LT KA+ CCLGY+GKFG  A++P+G LV+E+A ++QEYTQMGGVRPFGVA LVA +  D    LYRL
Sbjct:  102 LVLDLLTRKIARLSDGIAIMHSGLAADARILTKKAEACCLGYKGKFGEQAIIPVGNLVTEVASILQEYTQMGGVRPFGVAFLVAGIGDDGNGLLYRL 198          
BLAST of mRNA_M-pyrifera_M_contig8361.19530.1 vs. uniprot
Match: D7FQX5_ECTSI (Proteasome subunit alpha type 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQX5_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 2.580e-36
Identity = 58/97 (59.79%), Postives = 78/97 (80.41%), Query Frame = 2
Query:    5 LVMDVGTRKIARVSDGVVVSYAGLGADSRVLTMKAQECCLGYRGKFGNDAVVPIGTLVSEMAMLMQEYTQMGGVRPFGVALLVASVEVDEGTRLYRL 295
            LV+D+ TRKIAR+SDG+ + ++GL AD+R+LT KA+ CCLGY+ KFG  A++P+G LV+E+A ++QEYTQMGGVRPFG A LVA ++ D    LYRL
Sbjct:   11 LVLDLLTRKIARLSDGIAIMHSGLAADARILTKKAEACCLGYKSKFGEQAIIPVGNLVTEVASILQEYTQMGGVRPFGAAFLVAGIDDDGHGLLYRL 107          
BLAST of mRNA_M-pyrifera_M_contig8361.19530.1 vs. uniprot
Match: K0RCR8_THAOC (PROTEASOME_ALPHA_1 domain-containing protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RCR8_THAOC)

HSP 1 Score: 83.2 bits (204), Expect = 2.030e-17
Identity = 45/98 (45.92%), Postives = 63/98 (64.29%), Query Frame = 2
Query:    2 SLVMDVGTRKIARVSDGVVVSYAGLGADSRVLTMKAQECCLGYRGKFGNDAVVPIGTLVSEMAMLMQEYTQMGGVRPFGVALLVASVEVDEGTRLYRL 295
            +LV   G +K+ +V+DG    YAG+G D RVL  KA++    Y  ++    V P+G LV   A +MQEYTQ GGVRPFGV+LLVA ++ D   RL+++
Sbjct:   55 ALVEGEGVKKVEQVTDGSGFVYAGVGPDYRVLVRKARKSAQAYFREYRE--VKPVGQLVKSTASVMQEYTQSGGVRPFGVSLLVAGMDGDGVPRLFQV 150          
BLAST of mRNA_M-pyrifera_M_contig8361.19530.1 vs. uniprot
Match: B8CFM9_THAPS (Proteasome subunit alpha type 2 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CFM9_THAPS)

HSP 1 Score: 83.2 bits (204), Expect = 2.030e-17
Identity = 45/98 (45.92%), Postives = 62/98 (63.27%), Query Frame = 2
Query:    2 SLVMDVGTRKIARVSDGVVVSYAGLGADSRVLTMKAQECCLGYRGKFGNDAVVPIGTLVSEMAMLMQEYTQMGGVRPFGVALLVASVEVDEGTRLYRL 295
            +LV   G RK+ R++DG  V YAG+G D RVL  KA++    Y  ++      PI  LV   A +MQEYTQ GGVRPFGV+LL+A ++ D   RL+++
Sbjct:   55 ALVEGEGVRKVERITDGSGVVYAGVGPDYRVLVRKARKSSQAYYREYRETK--PISQLVKSTASVMQEYTQSGGVRPFGVSLLMAGMDGDGTRRLFQV 150          
BLAST of mRNA_M-pyrifera_M_contig8361.19530.1 vs. uniprot
Match: A0A7S2LYT1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LYT1_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.190e-17
Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = 2
Query:    2 SLVMDVGTRKIARVSDGVVVSYAGLGADSRVLTMKAQECCLGYRGKFGNDAVVPIGTLVSEMAMLMQEYTQMGGVRPFGVALLVASVEVDEGTRLYRL 295
            SLV   G +K+ R++ G    Y+G+G D RVL  K ++    Y  ++      P+G LV   A +MQEYTQ GGVRPFGV+LLVA ++ D   RL+++
Sbjct:   55 SLVEGEGVQKVERITKGSGFVYSGVGPDYRVLVRKGRKSAQAYYREYNETK--PVGQLVKSTASVMQEYTQSGGVRPFGVSLLVAGIDSDGSPRLFQV 150          
BLAST of mRNA_M-pyrifera_M_contig8361.19530.1 vs. uniprot
Match: R7QH40_CHOCR (Proteasome subunit alpha type n=2 Tax=Rhodymeniophycidae TaxID=2045261 RepID=R7QH40_CHOCR)

HSP 1 Score: 82.8 bits (203), Expect = 2.750e-17
Identity = 42/98 (42.86%), Postives = 67/98 (68.37%), Query Frame = 2
Query:    2 SLVMDVGTRKIARVSDGVVVSYAGLGADSRVLTMKAQECCLGYRGKFGNDAVVPIGTLVSEMAMLMQEYTQMGGVRPFGVALLVASVEVDEGTRLYRL 295
            +L+ +   +K++ +++ + + YAG+G DSRVL  KA++    Y   +    V+P+G LV E+A +MQE+TQ GGVRPFGV+LLVA  + DEG +L ++
Sbjct:   55 ALMAEDSVQKVSMITESIGLVYAGMGPDSRVLVKKARKAAQAYARIYKE--VIPVGQLVREVASVMQEFTQSGGVRPFGVSLLVAGFD-DEGPQLCQI 149          
BLAST of mRNA_M-pyrifera_M_contig8361.19530.1 vs. uniprot
Match: L8GYR7_ACACA (Proteasome subunit alpha type n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GYR7_ACACA)

HSP 1 Score: 82.4 bits (202), Expect = 3.480e-17
Identity = 42/97 (43.30%), Postives = 63/97 (64.95%), Query Frame = 2
Query:    5 LVMDVGTRKIARVSDGVVVSYAGLGADSRVLTMKAQECCLGYRGKFGNDAVVPIGTLVSEMAMLMQEYTQMGGVRPFGVALLVASVEVDEGTRLYRL 295
            L+ D   +KI+ ++D + V YAG+G DSRVL  K ++    Y   +   A +P+  LV E+A +MQE+TQ GGVRPFGV+LL+A  +   G +LY++
Sbjct:   46 LMDDTSIQKISLLTDNIGVVYAGMGPDSRVLVRKGRKIAQQYFRTY--HAPIPVNQLVRELAAIMQEFTQSGGVRPFGVSLLIAGYDEVAGAQLYQV 140          
BLAST of mRNA_M-pyrifera_M_contig8361.19530.1 vs. uniprot
Match: F4QBL2_CAVFA (Proteasome subunit alpha type 2 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QBL2_CAVFA)

HSP 1 Score: 79.7 bits (195), Expect = 9.790e-17
Identity = 45/98 (45.92%), Postives = 65/98 (66.33%), Query Frame = 2
Query:    2 SLVMDVGTRKIARVSDGVVVSYAGLGADSRVLTMKAQECCLGYRGKFGNDAVVPIGTLVSEMAMLMQEYTQMGGVRPFGVALLVASVEVDEGTRLYRL 295
            SLV     +KI+ +++ + + YAG+G DSRVL  KA++    Y   +     +P+  LV EMA +MQEYTQ GGVRPFGV+LLVA  + D+G +LY++
Sbjct:   53 SLVDGSSVQKISTITENIGLVYAGMGPDSRVLIKKARKEAEKYFKLYREK--IPVLQLVREMASIMQEYTQSGGVRPFGVSLLVAGFD-DKGPQLYQV 147          
BLAST of mRNA_M-pyrifera_M_contig8361.19530.1 vs. uniprot
Match: A0A137P6Q7_CONC2 (Proteasome subunit alpha type n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137P6Q7_CONC2)

HSP 1 Score: 81.3 bits (199), Expect = 1.340e-16
Identity = 45/98 (45.92%), Postives = 63/98 (64.29%), Query Frame = 2
Query:    2 SLVMDVGTRKIARVSDGVVVSYAGLGADSRVLTMKAQECCLGYRGKFGNDAVVPIGTLVSEMAMLMQEYTQMGGVRPFGVALLVASVEVDEGTRLYRL 295
            SLV +    K++ V  GV + Y+G+G D+RVL  KA++    YR  +  D   P   LV E+A +MQEYTQ GGVRPFGV+LLVA  + ++G  LY++
Sbjct:   54 SLVDNSSLEKVSHVCQGVGIVYSGMGPDARVLVSKARKLAQAYRRVYMEDP--PNNILVKEIANVMQEYTQSGGVRPFGVSLLVAGYD-EKGPTLYQV 148          
BLAST of mRNA_M-pyrifera_M_contig8361.19530.1 vs. uniprot
Match: A0A813A946_9DINO (PAB1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A946_9DINO)

HSP 1 Score: 79.7 bits (195), Expect = 1.990e-16
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 2
Query:   29 KIARVSDGVVVSYAGLGADSRVLTMKAQECCLGYRGKFGNDAVVPIGTLVSEMAMLMQEYTQMGGVRPFGVALLVASVEVDEGTRLYRL 295
            KI  ++D +   YAG+G DSRVL  KAQ+    Y   +G    +P+  LV E+A +MQE+TQ GGVRPFGVALL+A  + D G +LY++
Sbjct:   24 KIEYITDSIGAIYAGVGPDSRVLIRKAQKKAQAYYLTYGE--TIPVLQLVREIAAVMQEFTQSGGVRPFGVALLIAGFDED-GPQLYQV 109          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8361.19530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JP15_9PHAE1.780e-3661.86Proteasome subunit alpha type n=1 Tax=Ectocarpus s... [more]
D7FQX5_ECTSI2.580e-3659.79Proteasome subunit alpha type 2 n=1 Tax=Ectocarpus... [more]
K0RCR8_THAOC2.030e-1745.92PROTEASOME_ALPHA_1 domain-containing protein n=2 T... [more]
B8CFM9_THAPS2.030e-1745.92Proteasome subunit alpha type 2 n=1 Tax=Thalassios... [more]
A0A7S2LYT1_9STRA2.190e-1742.86Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
R7QH40_CHOCR2.750e-1742.86Proteasome subunit alpha type n=2 Tax=Rhodymenioph... [more]
L8GYR7_ACACA3.480e-1743.30Proteasome subunit alpha type n=1 Tax=Acanthamoeba... [more]
F4QBL2_CAVFA9.790e-1745.92Proteasome subunit alpha type 2 n=1 Tax=Cavenderia... [more]
A0A137P6Q7_CONC21.340e-1645.92Proteasome subunit alpha type n=1 Tax=Conidiobolus... [more]
A0A813A946_9DINO1.990e-1648.31PAB1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8361contigM-pyrifera_M_contig8361:1634..11240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue5.2e-28
Seed eggNOG ortholog2880.D7FQX5
KEGG koko:K02726
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
Hectar predicted targeting categoryother localisation
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsKOG0181@1,KOG0181@2759
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Exons2
Model size295
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8361.19530.1prot_M-pyrifera_M_contig8361.19530.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8361 1634..11230 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816743.7510405-CDS-M-pyrifera_M_contig8361:1633..18381622816743.7510405-CDS-M-pyrifera_M_contig8361:1633..1838Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8361 1634..1838 -
1692278152.2992194-CDS-M-pyrifera_M_contig8361:1633..18381692278152.2992194-CDS-M-pyrifera_M_contig8361:1633..1838Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8361 1634..1838 -
1622816743.76814-CDS-M-pyrifera_M_contig8361:11150..112301622816743.76814-CDS-M-pyrifera_M_contig8361:11150..11230Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8361 11151..11230 -
1692278152.3139575-CDS-M-pyrifera_M_contig8361:11150..112301692278152.3139575-CDS-M-pyrifera_M_contig8361:11150..11230Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8361 11151..11230 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816743.7808335-UTR-M-pyrifera_M_contig8361:11230..112401622816743.7808335-UTR-M-pyrifera_M_contig8361:11230..11240Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8361 11231..11240 -
1692278152.3239286-UTR-M-pyrifera_M_contig8361:11230..112401692278152.3239286-UTR-M-pyrifera_M_contig8361:11230..11240Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8361 11231..11240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8361.19530.1

>prot_M-pyrifera_M_contig8361.19530.1 ID=prot_M-pyrifera_M_contig8361.19530.1|Name=mRNA_M-pyrifera_M_contig8361.19530.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=95bp
MDVGTRKIARVSDGVVVSYAGLGADSRVLTMKAQECCLGYRGKFGNDAVV
PIGTLVSEMAMLMQEYTQMGGVRPFGVALLVASVEVDEGTRLYRL
back to top

mRNA from alignment at M-pyrifera_M_contig8361:1634..11240-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8361.19530.1 ID=mRNA_M-pyrifera_M_contig8361.19530.1|Name=mRNA_M-pyrifera_M_contig8361.19530.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=9607bp|location=Sequence derived from alignment at M-pyrifera_M_contig8361:1634..11240- (Macrocystis pyrifera P11B4 male)
ATCGCTGGTGATGGACGTCGGGACCAGGAAAATCGCGCGGGTATCGGACG GTGTTGTTGTATCGTATGCGGGACTAGGTGCTGATTCCAGGTGCGCATGT TCTGAAACCTTGCCTTTGTGTAGATTAGGGATAGGCTTAGTGTTTTTGTA CCAGGTACATCTGGAGCAAAGGACTTATCTCCTGCTCTCCTTATTTTGGA TCGGAGCTTATCGAGTGGCTGTCATGGCTAAATCTCAGTCGGTGTTAAAG CTAACACTGCGTTCAGCTAAAACAGCTGTATCTCACCTTCGGCTGTTGTT GTTTTCACATTAACTCATCGCCACAATGCAGTCCGTGGTCACTGGACAGG CTCCTATAACCCATGGAGTGGAATATTACCTCAGGCAAATGCCGCACGAA GAAAATATGAAAAAAAACGGAAAAAATAATACACGTACTGCTGTAATAAC TGCAACAGATCGTATACCTCACACAAAACGAACAAGAGAATACGCAGACT TGCAGGCTCGCAAGTAGCGCGGGAGGGTGTAGCACCGAGCTATAAGCTGA AAATGACAGAATCCACCACCAAGGAGAACAAGGAAGCGAGCAAAAACCTG AAACGAAAAGGCGATACATCGAAGAACCGGAAAAACTACTATTAATAGTA AATACGAAAAAGAGATACCAGGTAACTGGTACGTAGGCAAAAGGAAAAAG GAAACAAAAAACAAGGAAAAAGGCAAAGGGGAAAAAAAGGAAACAGGAAA AAGGATTTCTGTCTGGTGGGCAGACCGCTTGCCCCCCCTTTCCCCCCCTC CCCCCCCCCCTCCTCTCCCTCCTATCACGCGCTTGTATCGGCGCCAACGG TCAGAGTCGCGGTTGCAACCGTCCTGTGTCGCTCTGCCGTTGCCTTCTCC TTGGCCCTGTGCTATTTCCGCATGAAGGCCCTCGCCTTTTCCTTACCCGT TGGAACCATCTGCCGACCTTCTGTGCGGCCTCGCGCCACCTTTCGAACTT GATGCCACACCTTAAGGTCCTCCTCAAGGTCCTTCATCCAGTCCCACTCT TGTCCCCCGGAGATGCCCTTACCCTCAACCATCTCCCCAAACATCACCGT CCTCAGCAGGCGCTCCTCTCCCATGCGTGCCACGAACCCCGCGAAAAATG TCCTTCGTCTGCGTACCGTCGTCTCGACGCTCTCGGAGTCTTTCCTGAGA AGCACGTTGACATAGGATAGGATGCGGTCTTCGCGCTGTTGTTTCCGCTA GCCGAGACATCGCAGTAGCATCCGGTGGTGGGCCTTCCCGTAACCTGTCG TATTCAGCCTTGCTCGAGCTCCACGTGGCGCACCCGTATAATAGAGTAGC ATCTCGATTACCTCGGCTTTCAGCATCCGCACCTTTGAGCATAAGCGCAA ACCCGGGCCGTCATAGATTTCCATCTTATATCGCCCGAAGCACGACATCC CCTCTGGAGTCGAGGCGTTGCCTTGACACCTCTGAGGCCCGAATCTTCGC TGATGGCCCCGCCCAAGTACACAAACTCGACCGTTTGTCGGTATTTCGGT GTGGATTCCACCCTCTACGTAGGCTAATTTCGCGATATCACACGAATGAT ATGTACGTGCTGTTGTATTCTTGTTTGCTGCTGCAACAGCATCTACGCTC ACACCCTCACCCACCCCCTAGGGGTGTGACAACCTGCTGCACGCCTTCGG TGGCTGTATCGCATCCAACGCTCTGGTTTTCCGAGATCATGGCTTCCAAG AATTTCCGCATGGTGCCTACGTACCTATATGTGTACGTATGTTGTCAAAT CTTCGTACTTTTGCCAAATTTTCTCTTCGTACGAGCACTTTTCGGCAAAA TATTAAGTACTCGGACACGGAAGGCCCGGCCGGACACATTGGTCGAGGTC TCGGCGCGATCCGTGCACTCTGGAGCACGTGGCGGGCGCTCAAACTTTTT TTTTCCGGCGGGAGTGGATAGGACGATTTCCCTGGTTTCAGTAAGAAAGG CCTTCTTTTGTACGTACGTACCGGTAAAATAATGTTGTCTGTTTTCTTCC CTATGCTCCCATGAGGTGTGAGCACAGTCCGGACATATACCAGGCACACA ACAGACAACATGCACAGATCCCATCGTTACAGCGCTGCCGCCCACACGCC GTGCGTGTGCGATGCACCCATATGCGCAGTATTGCTGTGGCTGGTTGTGT TCATCGGAGCCTGCCGTCCGTATTCCACAGTCTGCCTTACCAGGTGCCGT ATTTTTTTCATACTTACATACCCAGGCTGACGTACCTACCTGTGTCACCA TCACCTCTCTTCCTGCTGCTTCTTCTGCGCATTGCTGTGTGTAATACAGC ATTGCCACTGCTCCAGCTGTACTCAGCACAGCAGTGCGCAAACAGCAGCA GCAGGCAGCGTACTATGCGCATGTGGCAGATCCGCGCTGTACTCTCAGTA CTCAGTAGTGTTTGTTGTTATCGCGGCATTGGCCGATGCACGTACCTCCT GCAGTGTGACCAGCTTTTTTTGCTCCGCGCCGATCATCCCCGCATTGTGT ACGTTCGTTGAGTCCAGTACAACAAATCGTTCGTACAAGCATCGTGTACC TTAAACTATAGGGCAAATGCCAAAATCAGGTATACCTGACCCGTTTGAGC CAAAATCGGGTACATGCTAAAACCAAGTAAAAAACGCGCGCCACGAGCGA TGTCATGTCCATGAAAATCCGTTACAAAAAGAATGCGCCTAAAGCATTAA GCGTGCCACATGGCCTCCAAAATCCGAATTGTTTTGTTTTCTTCAGGGTG TAGGTACCACGGGCTCCACTTGGACCTGCATAGAGTCACTATTAATACCT CTTATGCTTCGTTTGCTTCGCCACGGCATGAGCGCCAAGAGTATTTACTC TGGCGCCCCCCCCCCGTTGACAGTTTTAAAGCTTCTAGACCGTCCTCGCG GCACCGCCTGCTCGGCACGAAAATATCTTGCCGTACCAAACCTGAGACCA CCTCGACGCGCGGTGGTGCAGACGAAATGCCGTGTGACCATGGTGCTGTA TAGACTGCTGTGACCATAGAAAACAACAGAGTACAACACATCACGACAAC TAATAACTGGAGCACATCGCGCACCCCAAAGAAGAAAAAGTGAAACCAGC GTATGCATGTATGCATGCATAGATACGTAATTTTACGTAAGACGTACGAG TACAGAGTTTATCCGGCAATACAGAAGAATTTCAACCGAGGGAGGGCAGA CGCATACGGAGAAAAAAAACAATGCACGTATGGCCTCTCTGATTGGTTCA GAGTTGGCCGACATCAGTTGAAAGCTAGACATAGTAGAAAAAGTCAGGTA TACCTTGGCCTTTTCGAGCCAAAATCAGTTACGATGTCAGCCTGGCCAAT AGCAGGGCTCCTGGGGTGTGTTTTGTACTTGTTTTTAGCATGTAACTGAT TTTGGCCGAAAAGTGGCCAGGTATACCTGATTGTGGCGAAAACTCAAAAA TATACTTACAGTTATTACTTACTGTTGTGTGTCCTCCACTGCTCACCGAT AGATCCTATAGAGCCAGCTGAAAGGGCAGCAATACACGTTCCTTTGCCGC GCGTACGCGTATCTTCTGCTGTCATATCATATCACATGGCATTTTACGGC AGCACTGCCGTACCATGCAGTTGTACCTGTACAAGCTACTCTACACGTTC CTTTATCGCAGTACGTGTATATTTTGCTGTCGTATCATATCATATGGCAT TTTATAGCAGCACTGCTGCTGTACATGCAGTTGTACCTGTACAAGCTACA AGAGATCCTGCGATGTGTTTTAGATTGCGTAAAAAATACAATGCGCCAGT TGTATGAGTGCTTCTGGAGCGTAGATGACTAACTGGAAGTATTTTCGTTG CCGAGGTTCGACTCGCACGATCCCCGCTTTTTTTCTTTTCAACTTTTGAC TCATTTTGTACCAGTACATCCACCTTCCTTTTCTGACCTACCTGATACTA TTTTATAAAACTAAAAAAACACGTCAGCTGTGAGTTACCTGGTTGGTACT TTTTATACCTATGATACAATATAAGTTGTGTATTTTTACGGAAGGCCACG GAGTTTGGGCGCGCTTACGTGTGGCGTGCGTTCTTACCTCAACCTTTCAC AGTTGTTCCCAATACTTGGGACTAGAGCAAAGCATGTTTGAGAAAAAAAC ATTATTTCGGGATTGTTGCAGCAAATACTTGCGAGTACTTGCAGTATTCC GAGGTTCTGTACTACTGCCGATACTACTCTGCGGATGCTTTCGGGCTCTC ACTAATTCGGGATTGGCTACTGCTGCTGTGGATACTCCCTGTTGTGCTTC GAGTATCTCGGGGTTTTGTACTTCGGGTACTGCAAATACTATCAGTATTT CGTCCGTTGGTAGTGTTCGAACTGCGAGTACTCGCAGTACCGAAATAGTC TCAATATGCCCAGTATACTTGAAGTAGGACGTATACTTCGACCGTCTGCG CACCGTGTCGACAATTCTCAGGCCCATTGTTCGGTACCAAACACCCACAG ATGGTCCCACGAGGGAGTTGGAGCAACTTACTTTCGCTGGGGACAACTCG AGTACTTAGAGCACTGGCAGTATCTCGGGAATATTTACTGCTGGCTAAGT GTAGGTACTGCTCACACTCAGTATCTCGAGGTTCCGTGCTGCGGATATTG CCTGTACTCCAAGTATTTCGTGTTGCAGTACTGCGGTTCTTATTTTCCTG TGCTCTCGGGGTTCCTTGCTGCTCATACTCTCAGTACTCTCAGTAGTTGG GCCTTCTCAGTACTCACAGTTTTTGGCCGCCAGTACTTCAATACTCAATA CTCGGACTACGAATTGTTCTCGGGCATCTACTGTAACCGTGAAACCTTTA TTTTACCCTGAGCGCCAAAAAGCATTTCTTTTGGGGGAATATATTTTGTA TGTGCTGGATTTTTATTAGCCGGTCACAACGTATTATGTCGCAACCTCAC GCGAGTCATCTCTTCAGGATCAATATCCACTTACCGGTGTACCCTCTTTA TTATTATGCTTGCCATCCGACAATGTGCAGCATAAGCTTCAACGTTGATC ACTCAAATCATATTATTGAAATGATCCCACACTATTTCCACAAACAGCAA TATATAGTGTGTCCTCAAAAATATGTGTTTGTGTTCTTAACATTAATGAT GGGTGGATGATATTGGATGCAGATATTGATAGTTTTAAACAGGTGTGCAG GTATTTCATACGAGTATTATTTCGTTCTTGCGCCACTCCCCTAGGCACCT CCCCGAGGGGAACCTTGTACCCTCGTTTACTTGCTCTTCAGCAGTATCTG CAACCGGTGCCTGGAAGGAACGCAGAATCTATCTTTGACGAGCTTTGTTC ATGTTTCTGTTTTTTACGACCCAAGATGCCGTTCCACGTCTCACGACCAC GTACCACTGCGTTAAGGCGTGCATTGTGAAAGGAACTAATAATATGTGCC AGTGTTCACAAGTTATACAAAAAATAACATTTTGGCATGGCACCGCGGGA AGCGATTACCGTTGCAAATTCCCTGGTACGTATGTTTCGTGAATGATGCC GGTGCCAAATCGCCGTTCGTATGTGGTCTAACTATACCAAAGGTAGTTCC GCTTGGATGTGGTAATTCCCGTGTCGACACAACACAGCAGTATTTGCGTC AGGAGTTTAACGTTGGCACATGTGAAGCCCCTTTTAAAGCTGTCTTGGGC ATGCTTCCGGCTGCGAATCTGCTCTTCCAAAGTCTTTAGTCTACCCTTGG CGACGCCACGAAGACGACAAGTGTGAATCCCAGACGTGGGGTAGCTCGGT AGCTCTGATGAAGTCAGCCCCATTTCAAATACGGGCAACGTTAGAGTATC GTAGCGTGTTTACTGAGGCAGCGGACCTGGATTTGAGCCACGAGTCCGTG TATCGTTCAACGTCCCTTGCTGTCAGTATGCTAGATATGCACGGTAACCA TTGAACTATTTGTCAGGGCTGACTAATACGTACCAGGTAGCTCACAGCGC TTGACTATTTTCTCAGTGGTTACGGTGCATATCTAACGAAAGTGCAATCT GGCTGGTAAGCACTGGACCTCAGCTGTAACCCAAGGCTTGCAACCCCTTC AATCAACGCTGCCGTTTTACCATGATCTCCGGCTCTTGCGATGGCAGAGG CTCGTATACGGAATTATGATGCCTTTTATTGCCTTTTAGAGAGTTTAGGT CATTCAGATGTGCACTTTCTTTTAAAATTGGCCAATACAGACGACGGGTG AATTCCAACCCGGAACTTTGCTTTTGTTAGTTATGCACCATAATCATTGA GCTAATAGTGGCATCGCTCAGTGGTTATGGTGCATATCTAACACACTTGC ATGATGATGATGCAGTCTTAGTCATTGATGACGTTCAAAACACAAGATAT GTTGCCGGCGAGATCGGAGTCAGACAAAGCAGAGCGAGGTGCAGTAGTTC AAGTTTTCAGATGTCGCGGTCGTTGCTTCGTGCCTCATGTCGTAATTGCC AAAGTTAACTAAGTATTTGCTCAAACCGCAATAAAATTCCTTCCCTCACG AACTTATTTCGCCCTTCCTGAACTGTATTTTCGGCGCTCCAAACTAATCA CGAATTGATCGTTAAGGCATTTGTGCGCCAGACGGTAAAAAATTCTAACA GCCTACACCTCGTTTAGGTGCCGAGTCGGCTAGTGAGTTTTGCGAACTTC CACCTCACCAGCCGTTCGTTGAGAAGGCGCTTGGAGTTCGAGGTTTTCGA ATTTACGGAAAGCTCGTTGATTTTTCCTTACCAGGTATTTTGGTAAACAA TGGTAATACTGTGATCAACTGCGAAACACTAAACCTGTCGCGTAGAACAC CTGCACTTGGGGAGAAAACCAAGCCATATCCTAAGCTCGCGCTGGCCTGA AGTTTCGAGGTATATATTATACCAGGTACATAGTGCAAGCCGGCTACATG ATATAATATATACCAGTACCAGGTACCGTGTAAATACATGTACCAGGTAG GATATTGTTGATTCCTCGCCGTCAGCGAGTCTCCACATTTCTTACACGTA GATTTGAGCCGTTTTCGCGATACCTCGCGATGAGAGGCCCCTCTCGGCCC GAAATTCCCCATCGTGCTCGTCGACCCCTACTCTGCCCACTCCACCAAGG GTGGCCTCGGCCGTGCCCAAGCCATGCCTCGCAGGCGTGTGTGTTCTTGG GGATTTCATACCTTTATCACAGGCTCGCCATACCCAACTCTTTACAGTCC CGTGCAGGGTAATTACCTTTTTGGACCTTGCGATCTACACATAAGCATGT CCGGACGTTTGCTCGCAAGGCGGTGCACATTTTCGGTCAATTCATGCGCG AACGCGCCCGCCTGCCTGCTTTGCACCGGGCAGGGCCTCACGTGCGCTCG TGCCGTGAACATGCGGGCGGTAGACGCAGCAGTTTCATGAACAATGTGGT GATCGAGAGCTTGCCTTTCGTTTTTCTTGTTGCAAAAGTCTAAGTTGTTC TAAGTTGTTCCAAATCTTATGTACGTATGTACTCGGACTCATACTGCATT CATAGTTCTCCCATGATATACACGCAAGATCCAAAAATCCGTTGGGATGT CGACGACACTGATTTTTTGGGACCTGATACCCGTGCTTACCAGTACCACA GTCATACAGCAGTACCAACATCATATGGTTTTTGGATTGTGCGTCGTAGA GTAATATACTGATATTTGCTGTTGCTATTGGTATGGTACATAGTACCGGT AGTAGTGTTCTGTGTACGAGTATGCTTGCTCGGTACTGTAAATACGTGTA TACCAAGTACCAGGTACGTAATTGTATGTGAATCTGCTACAGTGTGTGCA TACATTCTGTTGTTACTGCTAGTGCTATGCGTCATTGTACGCTTCCCACC TGCCACCCAAGGTGTTCTCCATACTGCAGAACATTCCGTCAATAAATATA GGGATGATATTGTTGGTACTTCGCCGAAACGGCAATTACGTCCATCAAAA GCCGAAGCTCGCTCACGACTACCTCGCGATGCCATCCGAGGTGTTCTTGA TACAGCAGTACTAACCGTCGATCTTTTTTTTTCGAATGCACGTACTTTGC GGTACACCCCTTGGCAGTAATAAGGTTGCTTTTGTGCGGCTTTGGTTCAG TTTTGATTATACCTATTTTCGCCACTACGGGCATGCGCGAAGCCGCAGGC GGGCGTCAGCCCGCCGTGGCGAAGTCCCACTTGTACATGGTACAATATAA ATGCATACGTACCGTATTCCCGACGGGTACCTTGCAACGACTACAATCTA TGCCAAGCCACAATTGAGCGATACTAGATTTTACAGAAAGGCGAGCATTC GGACAATCTCCTTTTTTTTATGCGACACATTGCACAAAGGCGAACCTCGG CGAAAGCTCGGCCAGGGTCGTCGCCGGCCAATCCTATGTTGTGTAACCGT GTTCTCCCGGTACATGCCCGTTCTCAACCCTTCCCTTGAGGATGTCATGT ATTCCTCTCGTCAAAAAATGAATTTAATAATAAAGTTGTGATAGATCAGC CAGCAAACGAGTGTCGTATCACATATACCTGTCGGATGCACGAGTGCATC AAGGATGGAAGGGTCGTGGCACGGTTTGGTTGACATAACTATCGGGCTAC TTCAAGTTGTCCTAATTTGTGAGTCGCCATTTCCCCCAGAAATAACTAAA TCACAAGAGGCTTTTCGGAATTTAGGTTTTCAGTGGGGACAAAGGTTGTA TACCTAACCAACGGATATAATTCAACAAATTGGTTTGCAGGAGTTCGTCA ATAAGGAGCGCTACTGCGACAGTTTACCGGTTGCACAATCGCCGGCGTCC CCGGTGTCTTTATAGGTGGTCCGCGTGTCTACTAAGATCAATTTCGTGGG TTCAAGTCTCACCGATTACATACTCGTAAGGACTTTTTACTGCACAAAAA TTGATTTTCAGCAGAAAGCGCGAAAGCGTGAGTTAGCTTCATTCGATGGA AATCGACGAGCAGTGGGAATGCTGAACCCTATGCGCGACTAAAAATGAAG TCACGTACCCGGGGGGGAAGGGACGACACCTGTGACCACGGCTTGTCCAG AAGAGGACCGCTGAGGGTAAAACCTACGGGAAAAGCTGGAAAGTGAAAGT GATGATTAAAATATATATATAGCCTGCAGCATACCAGGTACCAAATGAGT ATTTGTCTCATCCAAACGGAGACGTTTTTCTGTTTGTGCGGCGAGCCGAT TGAGCTTTTTAGTTGCCTCATTGTCGGCTATTGTTTTTGTGTTATGTTGG TGCCGCATCGGCTAATCGAAAAAACCCTTGCATTGCCGCTTGCTGTCCTC AGGGTCTTAACTATGAAAGCGCAGGAGTGCTGTTTGGGATATCGGGGAAA ATTCGGGAACGATGCTGTGGTCCCGATCGGCACGCTTGTTTCGGAAATGG CAATGCTAATGCAAGAATACACGCAGATGGGCGGTGTTCGTCCTTTTGGT GTGGCTCTCTTGGTGGCGAGCGTTGAGGTTGATGAAGGAACTCGACTTTA CAGACTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig8361:1634..11240-

>mRNA_M-pyrifera_M_contig8361.19530.1 ID=mRNA_M-pyrifera_M_contig8361.19530.1|Name=mRNA_M-pyrifera_M_contig8361.19530.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig8361:1634..11240- (Macrocystis pyrifera P11B4 male)
ATGGACGTCGGGACCAGGAAAATCGCGCGGGTATCGGACGGTGTTGTTGT
ATCGTATGCGGGACTAGGTGCTGATTCCAGATGGACGTCGGGACCAGGAA
AATCGCGCGGGTATCGGACGGTGTTGTTGTATCGTATGCGGGACTAGGTG
CTGATTCCAGGGTCTTAACTATGAAAGCGCAGGAGTGCTGTTTGGGATAT
CGGGGAAAATTCGGGAACGATGCTGTGGTCCCGATCGGCACGCTTGTTTC
GGAAATGGCAATGCTAATGCAAGAATACACGCAGATGGGCGGTGTTCGTC
CTTTTGGTGTGGCTCTCTTGGTGGCGAGCGTTGAGGTTGATGAAGGAACT
CGACTTTACAGACTGGGTCTTAACTATGAAAGCGCAGGAGTGCTGTTTGG
GATATCGGGGAAAATTCGGGAACGATGCTGTGGTCCCGATCGGCACGCTT
GTTTCGGAAATGGCAATGCTAATGCAAGAATACACGCAGATGGGCGGTGT
TCGTCCTTTTGGTGTGGCTCTCTTGGTGGCGAGCGTTGAGGTTGATGAAG
GAACTCGACTTTACAGACTG
back to top