mRNA_M-pyrifera_M_contig8353.19514.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8353.19514.1
Unique NamemRNA_M-pyrifera_M_contig8353.19514.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig8353.19514.1 vs. uniprot
Match: D7G3M9_ECTSI (NUC153 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M9_ECTSI)

HSP 1 Score: 350 bits (897), Expect = 1.370e-114
Identity = 166/182 (91.21%), Postives = 175/182 (96.15%), Query Frame = 1 
Query:    1 MSGMQVSTFHGVKIYNLSSGKTLPQWLSEKKRRSLSKDVDYRKRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKVFDVNDLSMKFERHLDCETIDFMPLADGYEKLAFLLADRTLAFHAGYGRHHSVRIPRFGRSLAYQRETCDMLVGCGDGEIQRFNLDQGRFRTPILLPSSASS 546
            MSGMQVSTFHGVKIYNLSSGKTLPQWLSEKKRRSLSKDV+YR+RIELLQDFDFPTASQKVCVSPD QYVIVAGTYPPQIKVF+V DLSMKFERHLDCE +DFMPLA+GYEKLAFLLADRTLAFHAGYG+HHSVRIPRFGRSLAYQRETCDM+VGCGDGEI RFNLDQGRFRT + LPS +SS
Sbjct:    1 MSGMQVSTFHGVKIYNLSSGKTLPQWLSEKKRRSLSKDVEYRRRIELLQDFDFPTASQKVCVSPDAQYVIVAGTYPPQIKVFEVADLSMKFERHLDCEAVDFMPLAEGYEKLAFLLADRTLAFHAGYGKHHSVRIPRFGRSLAYQRETCDMMVGCGDGEIHRFNLDQGRFRTAMTLPSGSSS 182
[Close]
BLAST of mRNA_M-pyrifera_M_contig8353.19514.1 vs. uniprot
Match: A0A835Z278_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z278_9STRA)

HSP 1 Score: 244 bits (622), Expect = 2.600e-73
Identity = 112/171 (65.50%), Postives = 139/171 (81.29%), Query Frame = 1 
Query:   34 VKIYNLSSGKTLPQWLSEKKRRSLSKDVDYRKRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKVFDVNDLSMKFERHLDCETIDFMPLADGYEKLAFLLADRTLAFHAGYGRHHSVRIPRFGRSLAYQRETCDMLVGCGDGEIQRFNLDQGRFRTPILLPSSASS 546
            V+IYNLSSGKTLPQWL++K++R+LSKD  YR+RIELLQDF+FPTASQ + +SPDGQ+VIV GTYPPQ+KV++V +LSMKFERHLD E +    L+ G+EKL FL ADRTLAFHA YG HH+VRIPRFGR LAYQ+  CD++VG    E+ R NLD+GR+R P+ LP    +
Sbjct:   29 VEIYNLSSGKTLPQWLNDKQKRALSKDDGYRRRIELLQDFEFPTASQTIKMSPDGQFVIVTGTYPPQVKVYEVAELSMKFERHLDAECVAMEVLSAGFEKLVFLQADRTLAFHAAYGMHHAVRIPRFGRDLAYQQAACDLIVGGAGPELYRLNLDEGRYRAPLTLPGDGGT 199
[Close]
BLAST of mRNA_M-pyrifera_M_contig8353.19514.1 vs. uniprot
Match: A0A8K1FME9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FME9_PYTOL)

HSP 1 Score: 229 bits (583), Expect = 6.310e-68
Identity = 104/183 (56.83%), Postives = 139/183 (75.96%), Query Frame = 1 
Query:    1 MSGMQVSTFHGVKIYNLSSGKTLPQWLSEKKRRSLSKDVDYRKRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKVFDVNDLSMKFERHLDCETIDFMPLADGYEKLAFLLADRTLAFHAGYGRHHSVRIPRFGRSLAYQRETCDMLVGCGDGEIQRFNLDQGRFRTPILLPSSASSL 549
            M+ +  S+ +GVKIYNL+SGKTLPQWL+EK ++SLS+D DYR+R+ELLQDF FP+ SQ+V +S DG Y++  G YPP +KVFDV +LS+KFER LD E + F  L+  + KLAFL ADRTLAFHA YG H+++RIP+FGR + Y RE CD+ +     E+ R NLDQGRF  P+ + SSA+++
Sbjct:    1 MAALAASSLNGVKIYNLASGKTLPQWLAEKTKKSLSRDEDYRRRVELLQDFHFPSGSQRVKMSLDGNYIVATGMYPPIVKVFDVRELSLKFERRLDSEVVQFEILSPDFGKLAFLQADRTLAFHAPYGSHYNLRIPKFGRDMCYHRENCDIYIAASASEVYRVNLDQGRFLAPLEIGSSAANV 183
[Close]
BLAST of mRNA_M-pyrifera_M_contig8353.19514.1 vs. uniprot
Match: A0A4D9D2Q4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2Q4_9STRA)

HSP 1 Score: 219 bits (558), Expect = 4.040e-67
Identity = 96/178 (53.93%), Postives = 135/178 (75.84%), Query Frame = 1 
Query:    1 MSGMQVSTFHGVKIYNLSSGKTLPQWLSEKKRRSLSKDVDYRKRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKVFDVNDLSMKFERHLDCETIDFMPLADGYEKLAFLLADRTLAFHAGYGRHHSVRIPRFGRSLAYQRETCDMLVGCGDGEIQRFNLDQGRFRTPILLPS 534
            MS MQV+TF G K+YNLS+GK +PQWLSEK RR LSK+ DYR+R+EL+QD +FPTASQ++ VSPDG++++ +G YPP ++V+++ ++S+KFER L  E +DF+ L++   KL FL  DRTL+FHA YG H+S+RIP FGR+L Y   +CD+ +     E+ R NL++GRFR P+   S
Sbjct:    1 MSRMQVATFSGCKVYNLSAGKAVPQWLSEKHRRQLSKEEDYRRRVELIQDLEFPTASQRLRVSPDGRFLVASGMYPPAVRVYELQEMSLKFERRLTAEVVDFLILSEDVGKLCFLQNDRTLSFHAPYGTHYSLRIPTFGRALTYHPPSCDLYIAAAASELYRLNLEEGRFRAPVPCSS 178
[Close]
BLAST of mRNA_M-pyrifera_M_contig8353.19514.1 vs. uniprot
Match: A0A3M6VIN9_9STRA (NUC153 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VIN9_9STRA)

HSP 1 Score: 224 bits (572), Expect = 2.800e-66
Identity = 105/184 (57.07%), Postives = 137/184 (74.46%), Query Frame = 1 
Query:    1 MSGMQVSTFHGVKIYNLSSGKTLPQWLSEK--KRRSLSKDVDYRKRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKVFDVNDLSMKFERHLDCETIDFMPLADGYEKLAFLLADRTLAFHAGYGRHHSVRIPRFGRSLAYQRETCDMLVGCGDGEIQRFNLDQGRFRTPILLPSSASS 546
            M+ +  S+ +GVKIYNLSSGKTLPQWL+EK   R++L+KD DYR+R+ELLQDF FP ASQ+V +S DG +V+  G YPP +KVFDV DLS+KFER LD E + F  LA  + KLAFL ADR++AFHA YG H+++RIP+FGR + Y RE C++ V     ++ R NLDQGRF  P+ L S +S+
Sbjct:    1 MAALAASSLNGVKIYNLSSGKTLPQWLNEKGGSRKALAKDEDYRRRVELLQDFHFPAASQRVRMSADGNFVVATGVYPPSVKVFDVRDLSLKFERGLDAEVVQFEVLAADFGKLAFLQADRSVAFHAPYGTHYNMRIPKFGRDMTYHRENCEIYVAASGSDVYRINLDQGRFVAPLELQSQSSA 184
[Close]
BLAST of mRNA_M-pyrifera_M_contig8353.19514.1 vs. uniprot
Match: G4YXE2_PHYSP (NUC153 domain-containing protein n=21 Tax=Phytophthora TaxID=4783 RepID=G4YXE2_PHYSP)

HSP 1 Score: 224 bits (572), Expect = 2.880e-66
Identity = 104/184 (56.52%), Postives = 136/184 (73.91%), Query Frame = 1 
Query:    1 MSGMQVSTFHGVKIYNLSSGKTLPQWLSEK--KRRSLSKDVDYRKRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKVFDVNDLSMKFERHLDCETIDFMPLADGYEKLAFLLADRTLAFHAGYGRHHSVRIPRFGRSLAYQRETCDMLVGCGDGEIQRFNLDQGRFRTPILLPSSASS 546
            M+ +  S+ +GVKIYNLSSGKTLPQWL+EK   R++L+KD DYR+R+ELLQDF FP  SQ+V +S DG YV+  G YPP +KV+DV DLS+KFER LD E + F  L+  + KLAFL ADR++AFHA YG H+++RIP+FGR + Y RE C++ V     ++ R NLDQGRF  P+ L S AS+
Sbjct:    1 MAALAASSLNGVKIYNLSSGKTLPQWLAEKGGSRKALAKDEDYRRRVELLQDFHFPAGSQRVRMSADGNYVVATGVYPPSVKVYDVRDLSLKFERGLDAEVVQFEVLSSDFGKLAFLQADRSVAFHAPYGTHYNMRIPKFGRDMTYHRENCELYVAASGSDVYRINLDQGRFVAPLELQSQASA 184
[Close]
BLAST of mRNA_M-pyrifera_M_contig8353.19514.1 vs. uniprot
Match: A0A024TJ26_9STRA (NUC153 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TJ26_9STRA)

HSP 1 Score: 224 bits (570), Expect = 3.460e-66
Identity = 103/170 (60.59%), Postives = 131/170 (77.06%), Query Frame = 1 
Query:    1 MSGMQVSTFHGVKIYNLSSGKTLPQWLSEKKRRSLSKDVDYRKRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKVFDVNDLSMKFERHLDCETIDFMPLADGYEKLAFLLADRTLAFHAGYGRHHSVRIPRFGRSLAYQRETCDMLVGCGDGEIQRFNLDQGRF 510
            MSG+   + +GVKIYNLS+GKTLPQWL++K R++LS+D DYR+R+ELLQDF FP +SQ+V +SPDG YVI +GTYPP IKV+DV DLS+KFER LD E +  + L++ + KLA L  DR++AFHA YG H SVRIP+ GR + Y R  CD+ VG  D EI R NLDQG+F
Sbjct:    1 MSGLAAQSLNGVKIYNLSAGKTLPQWLAQKTRKALSRDEDYRRRLELLQDFHFPVSSQRVTMSPDGHYVIASGTYPPSIKVYDVRDLSLKFERRLDSEVVRLICLSEDFGKLALLQLDRSIAFHAPYGTHTSVRIPKAGRDMVYHRGNCDLYVGASDSEIYRLNLDQGQF 170
[Close]
BLAST of mRNA_M-pyrifera_M_contig8353.19514.1 vs. uniprot
Match: A0A6G0X8Q3_9STRA (NUC153 domain-containing protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8Q3_9STRA)

HSP 1 Score: 222 bits (566), Expect = 1.460e-65
Identity = 102/183 (55.74%), Postives = 135/183 (73.77%), Query Frame = 1 
Query:    1 MSGMQVSTFHGVKIYNLSSGKTLPQWLSEKKRRSLSKDVDYRKRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKVFDVNDLSMKFERHLDCETIDFMPLADGYEKLAFLLADRTLAFHAGYGRHHSVRIPRFGRSLAYQRETCDMLVGCGDGEIQRFNLDQGRFRTPILLPSSASSL 549
            MSG+   + +GVKIYNLS+GKTLPQWL++K R++LS+D DYR+R+ELLQDF FP +SQ+V +SPDG YVI +GTYPP +KV+DV DLS+KFER LD E +    L++ + KLA L  DR++AFHA YG H SVRIP+ GR + Y R  CD+ +G  D EI R NLDQG+F   +     A+++
Sbjct:    1 MSGLAAQSLNGVKIYNLSAGKTLPQWLAQKTRKALSRDEDYRRRLELLQDFHFPVSSQRVVMSPDGHYVIASGTYPPSLKVYDVRDLSLKFERRLDSEVVRLTCLSEDFGKLALLQLDRSIAFHAPYGTHTSVRIPKAGRDMVYHRGNCDLYIGASDSEIYRLNLDQGQFVAGLQTDMPATNV 183
[Close]
BLAST of mRNA_M-pyrifera_M_contig8353.19514.1 vs. uniprot
Match: A0A662WTJ8_9STRA (NUC153 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WTJ8_9STRA)

HSP 1 Score: 223 bits (567), Expect = 1.750e-65
Identity = 102/184 (55.43%), Postives = 136/184 (73.91%), Query Frame = 1 
Query:    1 MSGMQVSTFHGVKIYNLSSGKTLPQWLSEK--KRRSLSKDVDYRKRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKVFDVNDLSMKFERHLDCETIDFMPLADGYEKLAFLLADRTLAFHAGYGRHHSVRIPRFGRSLAYQRETCDMLVGCGDGEIQRFNLDQGRFRTPILLPSSASS 546
            M+ +  S+ +GVKIYNLSSGKTLPQWL+EK   R++L+KD DYR+R+ELLQDF FP  SQ+V +S DG Y++  G YPP +KVFDV DLS+KFER LD E +    L+  + KLAFL +DR++AFHA YG H+++RIP+FGR + Y RE C++ VG    ++ R NLDQGRF  P+ L S+ S+
Sbjct:    1 MAALAASSLNGVKIYNLSSGKTLPQWLAEKGGSRKALAKDEDYRRRVELLQDFHFPAGSQRVRMSSDGSYIVATGMYPPSVKVFDVRDLSLKFERRLDAEVVQLEVLSSDFGKLAFLQSDRSVAFHAPYGTHYAMRIPKFGRDMCYHRENCELYVGASGADVYRLNLDQGRFLAPLELRSAYSA 184
[Close]
BLAST of mRNA_M-pyrifera_M_contig8353.19514.1 vs. uniprot
Match: W4GCA3_9STRA (NUC153 domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GCA3_9STRA)

HSP 1 Score: 222 bits (565), Expect = 2.170e-65
Identity = 101/170 (59.41%), Postives = 131/170 (77.06%), Query Frame = 1 
Query:    1 MSGMQVSTFHGVKIYNLSSGKTLPQWLSEKKRRSLSKDVDYRKRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKVFDVNDLSMKFERHLDCETIDFMPLADGYEKLAFLLADRTLAFHAGYGRHHSVRIPRFGRSLAYQRETCDMLVGCGDGEIQRFNLDQGRF 510
            MSG+   + +GVKIYNLS+GKTLPQW+++K RR+LS+D DY++R+ELLQDF FP +SQ+V +SPDG YVI AGTYPP IKV+DV DLS+KFER LD E +  + L++ + KLA L  DR++AFHA YG H SVRIP+ GR + Y R  CD+ +G  D EI R NLDQG++
Sbjct:    1 MSGLAAQSLNGVKIYNLSAGKTLPQWIAQKTRRALSRDEDYQRRLELLQDFHFPVSSQRVTMSPDGHYVIAAGTYPPSIKVYDVRDLSLKFERRLDSEVVRLICLSEDFGKLALLQLDRSIAFHAPYGTHTSVRIPKAGRDMVYHRGDCDLYIGASDSEIYRLNLDQGQY 170
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8353.19514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3M9_ECTSI1.370e-11491.21NUC153 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835Z278_9STRA2.600e-7365.50WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A8K1FME9_PYTOL6.310e-6856.83Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A4D9D2Q4_9STRA4.040e-6753.93Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A3M6VIN9_9STRA2.800e-6657.07NUC153 domain-containing protein n=2 Tax=Peronospo... [more]
G4YXE2_PHYSP2.880e-6656.52NUC153 domain-containing protein n=21 Tax=Phytopht... [more]
A0A024TJ26_9STRA3.460e-6660.59NUC153 domain-containing protein n=2 Tax=Aphanomyc... [more]
A0A6G0X8Q3_9STRA1.460e-6555.74NUC153 domain-containing protein n=2 Tax=Aphanomyc... [more]
A0A662WTJ8_9STRA1.750e-6555.43NUC153 domain-containing protein n=2 Tax=Nothophyt... [more]
W4GCA3_9STRA2.170e-6559.41NUC153 domain-containing protein n=5 Tax=Aphanomyc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8353contigM-pyrifera_M_contig8353:6880..11840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score350.1
Seed ortholog evalue6.2e-94
Seed eggNOG ortholog2880.D7G3M9
Preferred nameNOL10
KEGG koko:K14788
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.rRNA processing
EggNOG OGsKOG2321@1,KOG2321@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons4
Model size555
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8353.19514.1prot_M-pyrifera_M_contig8353.19514.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8353 6880..11840 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816742.9146757-CDS-M-pyrifera_M_contig8353:6879..69371622816742.9146757-CDS-M-pyrifera_M_contig8353:6879..6937Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8353 6880..6937 +
1692278151.7514668-CDS-M-pyrifera_M_contig8353:6879..69371692278151.7514668-CDS-M-pyrifera_M_contig8353:6879..6937Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8353 6880..6937 +
1622816742.9289472-CDS-M-pyrifera_M_contig8353:9204..93871622816742.9289472-CDS-M-pyrifera_M_contig8353:9204..9387Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8353 9205..9387 +
1692278151.7644038-CDS-M-pyrifera_M_contig8353:9204..93871692278151.7644038-CDS-M-pyrifera_M_contig8353:9204..9387Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8353 9205..9387 +
1622816742.9392312-CDS-M-pyrifera_M_contig8353:10469..106731622816742.9392312-CDS-M-pyrifera_M_contig8353:10469..10673Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8353 10470..10673 +
1692278151.7743053-CDS-M-pyrifera_M_contig8353:10469..106731692278151.7743053-CDS-M-pyrifera_M_contig8353:10469..10673Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8353 10470..10673 +
1622816742.9496021-CDS-M-pyrifera_M_contig8353:11730..118401622816742.9496021-CDS-M-pyrifera_M_contig8353:11730..11840Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8353 11731..11840 +
1692278151.789734-CDS-M-pyrifera_M_contig8353:11730..118401692278151.789734-CDS-M-pyrifera_M_contig8353:11730..11840Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8353 11731..11840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8353.19514.1

>prot_M-pyrifera_M_contig8353.19514.1 ID=prot_M-pyrifera_M_contig8353.19514.1|Name=mRNA_M-pyrifera_M_contig8353.19514.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=185bp
MSGMQVSTFHGVKIYNLSSGKTLPQWLSEKKRRSLSKDVDYRKRIELLQD
FDFPTASQKVCVSPDGQYVIVAGTYPPQIKVFDVNDLSMKFERHLDCETI
DFMPLADGYEKLAFLLADRTLAFHAGYGRHHSVRIPRFGRSLAYQRETCD
MLVGCGDGEIQRFNLDQGRFRTPILLPSSASSLG*
back to top

mRNA from alignment at M-pyrifera_M_contig8353:6880..11840+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8353.19514.1 ID=mRNA_M-pyrifera_M_contig8353.19514.1|Name=mRNA_M-pyrifera_M_contig8353.19514.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4961bp|location=Sequence derived from alignment at M-pyrifera_M_contig8353:6880..11840+ (Macrocystis pyrifera P11B4 male)
ATGTCTGGGATGCAGGTGTCGACGTTCCACGGCGTGAAGATCTACAACCT
TTCCTCAGGTGAGATGGCTCTCTCTCTCCTGCTTGGCTCTCTCCTTGCAA
TGTGCTATTTACAGCCGCCTGTATATGCCATCCACGCACCACGCATCGGC
TCGCCCTCGCAGATGCCGACGTTTCCCGTGTCGTCCTATATCTCTGTCTC
TCGCGCTCTCTGCTTCTCTCTGTCCCCACCCCTCTCTCTCCCTCTATCGC
TGGCGCAGCAGTGCCAGAAAAGTCGACTTCAAATAAGGTATCCGAAAATG
TAAGAACTTTATGTATACCTAATACATATGTAATACGTGCTTACATTTCC
GGACATATTCGTATCGCAGTTTCCGGCTCGCACCGCGGGACTGTCAGTTT
CGATGGCCTCTGACCGTCGGGACGGTCACAGTCAAGTAAACCTCTGCCCA
CGAGGTACAATGATACCGACTCCCCCTCTCAAACAGGCCCTACGTGGCTT
CCAGGAGAGGCGCCGAAGGCGTGGTTGAGTCCGAGGCGCGGTTTTGTCTC
GGCGCTGCTGTCCGCACTTGGCTAATAATAGTTACGCTTTCTTGGTTGCA
GTTCTTGGTTGCAGTGGGCGCTACTTTACACCTGGTACTCGTACCTGGTT
GATGCTTCTGCTGCTAACAGCTAGCTTCGCCTCTGGTAGTGTTACCAAAG
TACGTTACCAAAGTACACGAGAACAGATAAGCGTCGTGGGCGCAAGTAAC
ATTCGAAGGCGAACAGCTACTGCTACTCATTACTGTTGTCTACAGTCTGT
ACGAGTAGTTCGACTTCATTTCATAACGAGTATCCTATTGAAGTGTTGTC
GCGTTGCTGCTGCTGCCGTTGCTGCTGCTGCTGCTGCTGCTGGGCCCTCC
CTCTGCTGGATCCGCTGCTGCTGCTGCTGCTTCTGTTGTCGCAACGTGTG
ATATGAATGTACAGCCGTATGTATTTTATAAATTTTGAAATACGTCAGCT
GTGAGTTCGACTGATACTCAACTTTGCAAGCTGCGTAATACGTCTCGTCT
ATATTCCATTTTTACCGAATTGTATTTGTGGTCCCTCTCACGCCCAAGGT
CGACACTGCCGCCGCCGCTACAGCTGCTGTTGTACATTTAGACGAGCCCG
TAGCTGTTTTAAGCGACAATCACTTGATTTCGTTTGTTCCTTGTCGCGTG
GTGTCGCGATTGTTCCCAACCCTGAGTTCAAGTATACATGTACGCGCACT
AAAAGACGGTACAGGTATTGCTGTCGCTATTAATAGGAGCTCTCCCGCTC
AAAAGGGTACCTGTAACTGTCATGTGCGCGTTGGTGGGAATGGTGGGCAG
AAGTGCAAGCCAGGCCCCAATAAACGCTCTCATACATGGGCACTGGTATT
TGTATACATGTGCGTGTCTTTCGCATGGAAACCATTCTTTACACCCGTCG
ACATCCAGCATACCCGGTGTTCGTGCCAATGCTTCACCCTAGAGAGATAC
AAGCTCTCTGTCGTCATAAAGCCACGACACAGCAGAGACACTTACTGTAC
ACTGCAATGCAGTAAGGAGGGTAGGCACTGTGACCGTACTGTATACGACG
GGCACGACATACACACGCCAGCAACCCAGGTATGATGTATATATCGTACG
TGTATCAGCCCGGAAGTTTTTTTTTTTGTGAAACTTGAAATCGCCGTCGG
ACCGACGGAAACCTACTGTTAAGTACGAATGCATGTCACATAGCGCTTTC
GGGAGAGCACCCTGTTTTCGTTTAGGTTTCCGGGTGAAAAGGCAACTCGC
GCTTGCCCGTATCGAAAGGTATGCCGGGTAGTTACCAACACCAGTGTCAA
CACGTACTTGGTAGTAAATATCGTTTGTAACAATGCGTTCTTGCCAGCTT
TCTCGTCGCTCGCTGCGCCTCTATGCAGTGTAGCAAGCCGAACCGACGCC
ATTGGCCAACCAAGGGGCCAGTACCGCCTTCTGTGCTCCATGTCGGCATA
TGAAAAACCGTTTCATACCCTACGCTATCGATAGAGTACTATTACGGGGG
GGCATAGTAAATAGGACCATATATTGTAGGTAAAAATAGCGAAATATTTA
GGTTTTTGTTTGTACCGTAGGTCCTATTTACTATTGTCCCCCGTAATAAC
ATGTTATTACAGTGCACGGTGTCATGGCGCCGGTACATGTTACCACGAGC
AATCCAGCCACCTGTAGATTGCCTTAGGAGAAACCATCCGTCCCACCCAC
TCCATCCACCCCCCCCATCCCCTAATTCCCCACCGCCTCCTTCCTTTTGA
CCGCCGCCACCGCCGCCGCCGAAAGGTAAAACTTTGCCGCAATGGCTCTC
CGAGAAGAAGCGGCGGTCCCTGTCGAAGGACGTCGACTACCGCAAGAGAA
TAGAGCTTCTCCAAGACTTTGACTTCCCCACGGCCTCGCAGAAGGTTTGC
GTGTCTCCGGACGGGCAGTACGTCATCGTCGCCGGAACCTACCCCCCTCA
GATCAAGGGTGAGTCTTTTTTTGCGGGGCCCAAAGCCAAAAAAAGGTATA
CCTATATACAAAGTACCAGGCATGCCTTTCGAGCCATGTATAGGCACACT
GAATATGGCACTCGGGGAAAAAAAGCGTCCTGGCCCCTCGCTATGGTTGG
CCAGCACCCGATCGCCCCCATGGCTGGCGGAAAAGTCCCAGGTACACCTC
TCTGTGGCTACGTACGTACTCAAGGTGGGGTTCACCTATTTTTGGCTTCA
ATTGTATATATACTTGGCTCAACTGAACCCCATACGGCCGGCCACAGAAC
CGTTGGAACAAGGTGGCCCGAGCTTTCAACGAAGAAAAAATACGGACCCA
GAGTAAGCAGTACGTATATGCACAGGGTCTCTTTCGTTCCCCACGGAATA
AATCTTCTCCCGACCAACAGCCCAGCTTCTTTTCGACGAGTGTGCTGTGG
TACTCCGTAACGGTTCGCATGCCGCCGCCCCCCACGAAAGGATACATCGC
GCAATAAGGGTCTCGTGTCCATATCCCACGACTGCGGCCACATCCCCGGG
GAGGGGATAAATTTCCGGCAAAACGTTTCTGTATGTGATATGTGGAAACA
AGGTATTGAGCACCCCAGCTGTTGGAGGTGTCTCTGTTAGGCGTAGGAAC
GGTGCTGGGAACGGTGCTCCGTCTCGACAGGGGTGCGTGGTCAAGTGGTC
AATGGTCGAATTGCTGAGGCAAGTAACAAATGAGTACCCCCCCACACACA
CTACCCCCATTGTTGCCTCTCTGCAAGTGGTCACACCGAAAAATATATTA
TATCATTGAAACTGTCATCCTTATGCAAGTCCGCCTCGTGAGCGGTTCTG
CGTAGAGGATGCAGCGCACACCCTTCACGCGATTCTCCGAAGACCTTACG
GCGCTTCCTCTCGCTTGGTGCAACCCGATGTCTGTCTGATCGGTGAAAAC
CCTACGTGCCCCGTCCCGGCGTTGTAGAGATGCGAGGGTCTAGGGTCATA
CGACTACAACCATGTATTACATCGAGTACACCCCCCCCCTCCCCCCCTCC
CCAAACCCCTACGTCCCACCCCTGCCCTCTACCCCCGCAGTGTTTGATGT
AAACGATCTGTCGATGAAGTTCGAGAGGCACCTGGACTGCGAAACGATCG
ATTTCATGCCGCTCGCTGACGGTTACGAAAAGCTCGCGTTCCTATTGGCC
GACCGAACTCTGGCGTTTCACGCCGGCTACGGGAGGCACCACTCCGTCAG
AATACCACGCTTCGGGAGGTCCCTGGCGTACCAAAGGGAAACCTGTGAGT
TTGTACCTGTTATATATATATATATATATATATATTTTAGTTTTCGAGCT
GGAAGTTGCCAAGAGGTTGCCGTGGGTTACATCTTTTCTTTTAAGACATG
CTTTTTAGGCTGCAGCGCTCTGCACCTATATTGAAAGCGGTCTGGCTGAC
CGGTCTGCCTGGCCGACTCTCTCTCTCTCGCTCTCTATCGCGCTCTCTGT
CTTTCTGCCTCTCTCTCAATCTCTCACTCTCCCTCGCTCCAGCTCTCTCG
CTCTCTATATATATGTTTGCGTATCTCCCTGCGTACGGTGAAGAGCTTCG
GCGGGATCTGCCACCGCTCGTCACTCCGAAACTCGAGCTCAAAATCAACC
CGAATTCGATACCGAAACCAAAACCGAAACGGTAACGGAACTTGTATCCT
AAATCGTGTCCGAACCCGTATCCGAACCATTTCCGTATCAGTATCCGCGA
CCGTATCCGTATTCATAACCGTATCTGAAACCGTTTCTGAAACCGCACCC
GTAACCGCAGCCGAAACCCGTTCCCGAAACCAAACGTGAAACTGAAACCC
AAACTGAAACCCGAACCCAAACCCAAACCCAAACTGAAAGCGAAAACGAA
AACGCAACCGGAACCGATCGTTGTTTGTTTTTTTGCAGGCGGTATGCTGT
GGGGTGCGGGGACAGAGAACTGGAACCGTAACCGCAGCCCAAACCCGTAC
CCAAAACAGAAACAGTGTCAGAAATCGATTCAGAAGCCGAGTTGAGCAGC
AAACCTGTAACCGAATCCGAAACCAAATTCGAAAATGAAACCGAACCGTA
ACCGAAACCGAATCCGAAACTTGAACCAAACCGTAAGCCGTCACCGAACC
GAATCCAGAACCGAAGCCGAAACCAAGTCTGGAACCGAAGCCGAAGCCGA
AACTTAAACCGAAAGCGCAATCAGTAACCGAAACCATTATCAAACCGAAA
CCGAATCCGAAGCTGAGACTGAAACTGAAATCGAAGCCGAAACCGGAACC
GAAACTGACCTTGAGCCTGGTCCTGTTGTCTCCATTGTTCATCCTTGGCA
GGCGACATGCTTGTGGGATGCGGGGATGGAGAAATCCAGCGGTTTAATCT
AGACCAAGGGCGGTTTCGCACGCCCATCCTGCTGCCTTCGAGCGCATCAA
GTCTTGGGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig8353:6880..11840+

>mRNA_M-pyrifera_M_contig8353.19514.1 ID=mRNA_M-pyrifera_M_contig8353.19514.1|Name=mRNA_M-pyrifera_M_contig8353.19514.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1110bp|location=Sequence derived from alignment at M-pyrifera_M_contig8353:6880..11840+ (Macrocystis pyrifera P11B4 male)
ATGTCTGGGATGCAGGTGTCGACGTTCCACGGCGTGAAGATCTACAACCT
TTCCTCAGATGTCTGGGATGCAGGTGTCGACGTTCCACGGCGTGAAGATC
TACAACCTTTCCTCAGGTAAAACTTTGCCGCAATGGCTCTCCGAGAAGAA
GCGGCGGTCCCTGTCGAAGGACGTCGACTACCGCAAGAGAATAGAGCTTC
TCCAAGACTTTGACTTCCCCACGGCCTCGCAGAAGGTTTGCGTGTCTCCG
GACGGGCAGTACGTCATCGTCGCCGGAACCTACCCCCCTCAGATCAAGGG
TAAAACTTTGCCGCAATGGCTCTCCGAGAAGAAGCGGCGGTCCCTGTCGA
AGGACGTCGACTACCGCAAGAGAATAGAGCTTCTCCAAGACTTTGACTTC
CCCACGGCCTCGCAGAAGGTTTGCGTGTCTCCGGACGGGCAGTACGTCAT
CGTCGCCGGAACCTACCCCCCTCAGATCAAGGTGTTTGATGTAAACGATC
TGTCGATGAAGTTCGAGAGGCACCTGGACTGCGAAACGATCGATTTCATG
CCGCTCGCTGACGGTTACGAAAAGCTCGCGTTCCTATTGGCCGACCGAAC
TCTGGCGTTTCACGCCGGCTACGGGAGGCACCACTCCGTCAGAATACCAC
GCTTCGGGAGGTCCCTGGCGTACCAAAGGGAAACCTTGTTTGATGTAAAC
GATCTGTCGATGAAGTTCGAGAGGCACCTGGACTGCGAAACGATCGATTT
CATGCCGCTCGCTGACGGTTACGAAAAGCTCGCGTTCCTATTGGCCGACC
GAACTCTGGCGTTTCACGCCGGCTACGGGAGGCACCACTCCGTCAGAATA
CCACGCTTCGGGAGGTCCCTGGCGTACCAAAGGGAAACCTGCGACATGCT
TGTGGGATGCGGGGATGGAGAAATCCAGCGGTTTAATCTAGACCAAGGGC
GGTTTCGCACGCCCATCCTGCTGCCTTCGAGCGCATCAAGTCTTGGGTGA
GCGACATGCTTGTGGGATGCGGGGATGGAGAAATCCAGCGGTTTAATCTA
GACCAAGGGCGGTTTCGCACGCCCATCCTGCTGCCTTCGAGCGCATCAAG
TCTTGGGTGA
back to top