mRNA_M-pyrifera_M_contig8351.19510.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8351.19510.1
Unique NamemRNA_M-pyrifera_M_contig8351.19510.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8351.19510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8351contigM-pyrifera_M_contig8351:780..2457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionThioesterase
Ec32 orthologEc-24_000940.2
Exons3
Model size494
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8351.19510.1prot_M-pyrifera_M_contig8351.19510.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8351 947..2352 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816742.6557827-UTR-M-pyrifera_M_contig8351:779..9461622816742.6557827-UTR-M-pyrifera_M_contig8351:779..946Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8351 780..946 -
1692278151.5503263-UTR-M-pyrifera_M_contig8351:779..9461692278151.5503263-UTR-M-pyrifera_M_contig8351:779..946Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8351 780..946 -
1622816742.7147431-UTR-M-pyrifera_M_contig8351:2352..24571622816742.7147431-UTR-M-pyrifera_M_contig8351:2352..2457Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8351 2353..2457 -
1692278151.614304-UTR-M-pyrifera_M_contig8351:2352..24571692278151.614304-UTR-M-pyrifera_M_contig8351:2352..2457Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8351 2353..2457 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816742.672354-CDS-M-pyrifera_M_contig8351:946..10101622816742.672354-CDS-M-pyrifera_M_contig8351:946..1010Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8351 947..1010 -
1692278151.5623374-CDS-M-pyrifera_M_contig8351:946..10101692278151.5623374-CDS-M-pyrifera_M_contig8351:946..1010Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8351 947..1010 -
1622816742.6856515-CDS-M-pyrifera_M_contig8351:1235..13151622816742.6856515-CDS-M-pyrifera_M_contig8351:1235..1315Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8351 1236..1315 -
1692278151.5837412-CDS-M-pyrifera_M_contig8351:1235..13151692278151.5837412-CDS-M-pyrifera_M_contig8351:1235..1315Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8351 1236..1315 -
1622816742.700841-CDS-M-pyrifera_M_contig8351:2274..23521622816742.700841-CDS-M-pyrifera_M_contig8351:2274..2352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8351 2275..2352 -
1692278151.605925-CDS-M-pyrifera_M_contig8351:2274..23521692278151.605925-CDS-M-pyrifera_M_contig8351:2274..2352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8351 2275..2352 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8351.19510.1

>prot_M-pyrifera_M_contig8351.19510.1 ID=prot_M-pyrifera_M_contig8351.19510.1|Name=mRNA_M-pyrifera_M_contig8351.19510.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
METSSDRSESVLYPGGGFYLLDPDNEDKVLRFFRDRFHRCIEEGKPDEEP
WQMAEGNTYAGAPKDDEGSASSG*
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mRNA from alignment at M-pyrifera_M_contig8351:780..2457-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8351.19510.1 ID=mRNA_M-pyrifera_M_contig8351.19510.1|Name=mRNA_M-pyrifera_M_contig8351.19510.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1678bp|location=Sequence derived from alignment at M-pyrifera_M_contig8351:780..2457- (Macrocystis pyrifera P11B4 male)
AGCGCGGTGGACTCGTACGAATACCTAAGTGACACGGCGCTCGAGTGCCC
AATCTATAGCTTCGGGGGAACACACGACGGCGAACAGGACATCGGCGCTT
GGGCCATGGAGACCTCGTCGGACAGGAGTGAAAGCGTGCTATACCCCGGG
GGGGGGTTCTATTTGCTGGATCCGGACAATGAGGTATCCACGGAAATAGG
TTGGGACCATTACCACTCGTAGGCGCATTTATCCCATGGCGCCATTTTAA
AAGCCTGGAAACACATTCTGGAAGAATCACTTTCACGTACTTGTAGCGCC
TTGTCACGCCCTGTAGTGTTTCGGCAGGCCATGAAATCCGCATCCGGCAA
GCGTGAGGCACTGCTAACGGATAGCTGCAGTAGATTGTAGTACCTGAAAA
AGCCTGCTGACGGTCGCCAGCTGAAACGGCTAGTCAGTCACGATCATTTT
TATAACGACCTCGATAAGTTGAGGTGCTCAACAACCGTGATGGGCGGAAA
ACATGCATACTTACTGTAAGTCGGAGGCAAGTCCGCCAGCGGCGTTGATG
GAGGTTTTGTGGGCACGCTTGCCGTGGGGAACGTGCTTGTCCCAATCGGT
ACGTTGTTCGTTGACCATCATTGCCAGCTGTGAAGGTGCTCCTTGTGATG
CAGCATCGTCAACTACCTCTTTTTCAGAGAAATCGCCTTCACTTGCTGCC
GTTAAATATGACAGCTAGGCGATGCCTCGGGCCCCGTTACACCCTCTGCC
TCGAACCATTCGACTCTAATTCCGAGTAGTTTGTCCCAAAAAACGTGGGG
ACAGGCTATAGGTGGGGGTCAAGACGAATGCAGTTTCGAATATGGCCTTA
GCAGCGCGGAAGGCACAGAGTAGCTCTTCCCCACCTCTTCGTGTTCTCCG
GCCACCGCGCACACGATTCTCGAGCCGGTGGCGTCAAAACGTGGGCTAAT
CAGGGGTCAGAAGTGGTCACTGGGGGTCTCATAACCGTGTTCCGTCTCTT
TCATTGTACTTGCGTAATACCAATTATGAAACGACAACATGAACGATAAC
AGCGTACCAGATACATCGCATGAAGAAAACGAGAACGACCAACGTTTCTC
GTTGGTGTACTGGCCCTTTCGCTCTACGGTCGAAAAATACAGGACAAGGT
TCTTCGGTTCTTCAGAGATCGCTTTCATCGCTGTATAGAAGAAGGGAAGC
CGGACGAAGAACCATGGCAAATGTGAGCTCGGATAGCGAAAATACGAAAT
TAAGCCCACCACATTCTCAGAAACCAAGGCCACAATTCCGTTTCCCAAGT
CTAAACGAGCCGAGAGGTTTGCAAACGGGTCGAGAGGTTCGCGATATAAT
TCCGATCTATTGGCACTAAGCATGAGAAAAAAAAAGGACGTACATTATGT
CATCTACGTTAAAGCCATATATCAACCCCCTACGTTCCCCTTTTCAGGGC
AGAAGGCAACACGTACGCCGGAGCGCCGAAGGACGACGAAGGTTCTGCAT
CAAGCGGCTGATGCTGTCGCCGGTCGATATTTGGCGTGGTCAACGAAGTG
CACAAGGGCCACTGCTCCATATTTGAACAGTATTGGTATCGTAGCTTCTA
TTTATAATACAAACTCCAGTCGCGCAGGGAGGGCAACGCCTTCCGCACGG
AGCGCGCGTGTGATCAGTTTGACACCGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8351:780..2457-

>mRNA_M-pyrifera_M_contig8351.19510.1 ID=mRNA_M-pyrifera_M_contig8351.19510.1|Name=mRNA_M-pyrifera_M_contig8351.19510.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig8351:780..2457- (Macrocystis pyrifera P11B4 male)
ATGGAGACCTCGTCGGACAGGAGTGAAAGCGTGCTATACCCCGGGGGGGG
GTTCTATTTGCTGGATCCGGACAATGAGATGGAGACCTCGTCGGACAGGA
GTGAAAGCGTGCTATACCCCGGGGGGGGGTTCTATTTGCTGGATCCGGAC
AATGAGGACAAGGTTCTTCGGTTCTTCAGAGATCGCTTTCATCGCTGTAT
AGAAGAAGGGAAGCCGGACGAAGAACCATGGCAAATGACAAGGTTCTTCG
GTTCTTCAGAGATCGCTTTCATCGCTGTATAGAAGAAGGGAAGCCGGACG
AAGAACCATGGCAAATGGCAGAAGGCAACACGTACGCCGGAGCGCCGAAG
GACGACGAAGGTTCTGCATCAAGCGGCTGAGGCAGAAGGCAACACGTACG
CCGGAGCGCCGAAGGACGACGAAGGTTCTGCATCAAGCGGCTGA
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