mRNA_M-pyrifera_M_contig8349.19497.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8349.19497.1
Unique NamemRNA_M-pyrifera_M_contig8349.19497.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8349.19497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8349contigM-pyrifera_M_contig8349:5216..6028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size815
Cds size630
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816741.9724162-UTR-M-pyrifera_M_contig8349:5215..53981622816741.9724162-UTR-M-pyrifera_M_contig8349:5215..5398Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8349 5216..5398 +
1692278151.1772678-UTR-M-pyrifera_M_contig8349:5215..53981692278151.1772678-UTR-M-pyrifera_M_contig8349:5215..5398Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8349 5216..5398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816741.988242-CDS-M-pyrifera_M_contig8349:5398..60281622816741.988242-CDS-M-pyrifera_M_contig8349:5398..6028Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8349 5399..6028 +
1692278151.1881456-CDS-M-pyrifera_M_contig8349:5398..60281692278151.1881456-CDS-M-pyrifera_M_contig8349:5398..6028Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8349 5399..6028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8349.19497.1prot_M-pyrifera_M_contig8349.19497.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8349 5399..6028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8349.19497.1

>prot_M-pyrifera_M_contig8349.19497.1 ID=prot_M-pyrifera_M_contig8349.19497.1|Name=mRNA_M-pyrifera_M_contig8349.19497.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=210bp
MSRFLMYDTGSSEFFCGFPAAVLCGSLSGGKVEAIGGRKQRARRQGIGHR
RSKGKETKGKGGWSAPQVGRLGARLLVFGIMVVAGRIKRTPAARHDSPQG
NECSGNLSRYVGSGAKALLYRDAVYEGVFGRSTGYDAMSLLVGSRPVPPG
RGCGALVWGRCGDAKFRVSEISHFNGLIGTVTVDKLTGFDWTHLFRSGVE
SVLFLLFFQQ
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mRNA from alignment at M-pyrifera_M_contig8349:5216..6028+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8349.19497.1 ID=mRNA_M-pyrifera_M_contig8349.19497.1|Name=mRNA_M-pyrifera_M_contig8349.19497.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=813bp|location=Sequence derived from alignment at M-pyrifera_M_contig8349:5216..6028+ (Macrocystis pyrifera P11B4 male)
GTGGGGTTGGCTGGCGCGAGGGCCCGGGTGCGCCGCGCTAGAAATAGTTG
CAGTAAGTTGTGTATCGTGCGTAACGCAACTGTTGGTATATGGGCTCGTA
TGGTGGGGTGTTGGTCGGGGTATTAGTGGTATCGATATAGCGCGCCGCCT
CCGTCGCTCCTTGTTGAAAAAGGTGTCGAGTTCATGTCGAGGTTTTTGAT
GTATGATACTGGATCGAGCGAGTTTTTTTGTGGGTTTCCTGCGGCAGTCC
TGTGCGGCAGCTTGTCGGGGGGAAAGGTGGAGGCCATTGGCGGGCGGAAA
CAACGCGCAAGGAGGCAGGGAATCGGGCATAGGCGAAGCAAAGGCAAAGA
AACCAAAGGAAAAGGGGGGTGGTCAGCTCCTCAAGTTGGCCGCCTAGGAG
CCCGCCTACTTGTTTTCGGTATCATGGTCGTGGCTGGAAGGATAAAGCGT
ACACCCGCAGCACGGCATGACAGCCCACAGGGGAATGAATGTAGCGGCAA
TTTATCGCGATATGTGGGGTCGGGTGCTAAGGCTCTGCTATACCGTGACG
CTGTGTACGAGGGTGTTTTTGGGCGTTCGACTGGCTACGACGCGATGAGT
CTTCTGGTGGGTAGTAGACCCGTACCCCCTGGCCGGGGCTGCGGGGCATT
GGTGTGGGGTCGATGTGGGGACGCCAAATTTCGTGTTTCCGAAATATCAC
ATTTTAATGGATTGATTGGTACAGTCACGGTCGATAAGTTAACCGGCTTT
GACTGGACACACTTGTTTCGAAGTGGAGTAGAGTCCGTATTGTTCCTTCT
TTTTTTTCAGCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8349:5216..6028+

>mRNA_M-pyrifera_M_contig8349.19497.1 ID=mRNA_M-pyrifera_M_contig8349.19497.1|Name=mRNA_M-pyrifera_M_contig8349.19497.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1260bp|location=Sequence derived from alignment at M-pyrifera_M_contig8349:5216..6028+ (Macrocystis pyrifera P11B4 male)
ATGTCGAGGTTTTTGATGTATGATACTGGATCGAGCGAGTTTTTTTGTGG
GTTTCCTGCGGCAGTCCTGTGCGGCAGCTTGTCGGGGGGAAAGGTGGAGG
CCATTGGCGGGCGGAAACAACGCGCAAGGAGGCAGGGAATCGGGCATAGG
CGAAGCAAAGGCAAAGAAACCAAAGGAAAAGGGGGGTGGTCAGCTCCTCA
AGTTGGCCGCCTAGGAGCCCGCCTACTTGTTTTCGGTATCATGGTCGTGG
CTGGAAGGATAAAGCGTACACCCGCAGCACGGCATGACAGCCCACAGGGG
AATGAATGTAGCGGCAATTTATCGCGATATGTGGGGTCGGGTGCTAAGGC
TCTGCTATACCGTGACGCTGTGTACGAGGGTGTTTTTGGGCGTTCGACTG
GCTACGACGCGATGAGTCTTCTGGTGGGTAGTAGACCCGTACCCCCTGGC
CGGGGCTGCGGGGCATTGGTGTGGGGTCGATGTGGGGACGCCAAATTTCG
TGTTTCCGAAATATCACATTTTAATGGATTGATTGGTACAGTCACGGTCG
ATAAGTTAACCGGCTTTGACTGGACACACTTGTTTCGAAGTGGAGTAGAG
TCCGTATTGTTCCTTCTTTTTTTTCAGCAGATGTCGAGGTTTTTGATGTA
TGATACTGGATCGAGCGAGTTTTTTTGTGGGTTTCCTGCGGCAGTCCTGT
GCGGCAGCTTGTCGGGGGGAAAGGTGGAGGCCATTGGCGGGCGGAAACAA
CGCGCAAGGAGGCAGGGAATCGGGCATAGGCGAAGCAAAGGCAAAGAAAC
CAAAGGAAAAGGGGGGTGGTCAGCTCCTCAAGTTGGCCGCCTAGGAGCCC
GCCTACTTGTTTTCGGTATCATGGTCGTGGCTGGAAGGATAAAGCGTACA
CCCGCAGCACGGCATGACAGCCCACAGGGGAATGAATGTAGCGGCAATTT
ATCGCGATATGTGGGGTCGGGTGCTAAGGCTCTGCTATACCGTGACGCTG
TGTACGAGGGTGTTTTTGGGCGTTCGACTGGCTACGACGCGATGAGTCTT
CTGGTGGGTAGTAGACCCGTACCCCCTGGCCGGGGCTGCGGGGCATTGGT
GTGGGGTCGATGTGGGGACGCCAAATTTCGTGTTTCCGAAATATCACATT
TTAATGGATTGATTGGTACAGTCACGGTCGATAAGTTAACCGGCTTTGAC
TGGACACACTTGTTTCGAAGTGGAGTAGAGTCCGTATTGTTCCTTCTTTT
TTTTCAGCAG
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