mRNA_M-pyrifera_M_contig83443.19486.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83443.19486.1
Unique NamemRNA_M-pyrifera_M_contig83443.19486.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig83443.19486.1 vs. uniprot
Match: A0A1G2ZBX0_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium RBG_13_63_9 TaxID=1801965 RepID=A0A1G2ZBX0_9BACT)

HSP 1 Score: 118 bits (296), Expect = 1.210e-30
Identity = 56/84 (66.67%), Postives = 65/84 (77.38%), Query Frame = 1
Query:    1 LGIAILDHPSSFRFPSRWQVRTYGLFAANPFGLRHFTGVRGGVGAHTLKAGETMSFHYRVLFHKGDEKEGKVAEAFKRYAEVSK 252
            +GIAIL+HP SFRFP+ W VRTYGLFAANPFGL  F G     G+HTL+ GETM+F YRVL H+GDEK GKVAEA+  YA+  K
Sbjct:  228 VGIAILNHPGSFRFPTFWHVRTYGLFAANPFGLHDFQGSNDIDGSHTLRPGETMTFRYRVLLHRGDEKAGKVAEAYAAYAKEGK 311          
BLAST of mRNA_M-pyrifera_M_contig83443.19486.1 vs. uniprot
Match: A0A2G2KRP5_9BACT (Uncharacterized protein n=1 Tax=Blastopirellula sp. TaxID=2024826 RepID=A0A2G2KRP5_9BACT)

HSP 1 Score: 118 bits (296), Expect = 1.310e-30
Identity = 56/83 (67.47%), Postives = 65/83 (78.31%), Query Frame = 1
Query:    1 LGIAILDHPSSFRFPSRWQVRTYGLFAANPFGLRHFTGVRGGVGAHTLKAGETMSFHYRVLFHKGDEKEGKVAEAFKRYAEVS 249
            +GIAI +HPSSFR+PS W VRTYGLFAAN FGL HF G     G+H LK GE M+F YRVLFH+GD KE KVAE+F+RYA+ S
Sbjct:  232 VGIAIFNHPSSFRYPSYWHVRTYGLFAANVFGLHHFKGDDTQDGSHLLKQGEPMTFRYRVLFHQGDNKEAKVAESFQRYAKTS 314          
BLAST of mRNA_M-pyrifera_M_contig83443.19486.1 vs. uniprot
Match: A0A847GTI5_9BACT (Uncharacterized protein n=1 Tax=Candidatus Anammoximicrobium sp. TaxID=2699742 RepID=A0A847GTI5_9BACT)

HSP 1 Score: 117 bits (294), Expect = 2.540e-30
Identity = 56/84 (66.67%), Postives = 69/84 (82.14%), Query Frame = 1
Query:    1 LGIAILDHPSSFRFPSRWQVRTYGLFAANPFGLRHFTGVRGGVGAHTLKAGETMSFHYRVLFHKGDEKEGKVAEAFKRYAEVSK 252
            +GIAIL+HPSSFRFP+ W VRTYGLF ANPFG+  FTG +G  G HTL+ GE+ +  YRVL HKGDE+EGKVAEAF+ YA+++K
Sbjct:  231 VGIAILNHPSSFRFPTYWHVRTYGLFTANPFGVSDFTGGKGN-GDHTLQPGESFTLCYRVLIHKGDEQEGKVAEAFEAYAKMAK 313          
BLAST of mRNA_M-pyrifera_M_contig83443.19486.1 vs. uniprot
Match: A0A2E1KFS9_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E1KFS9_9PLAN)

HSP 1 Score: 117 bits (294), Expect = 4.320e-30
Identity = 54/84 (64.29%), Postives = 62/84 (73.81%), Query Frame = 1
Query:    1 LGIAILDHPSSFRFPSRWQVRTYGLFAANPFGLRHFTGVRGGVGAHTLKAGETMSFHYRVLFHKGDEKEGKVAEAFKRYAEVSK 252
            +G+AIL+HPSSFRFP+ W VRTYGLFAANPFGL HF G       HTLK GE+ S HYRVL H GD  +GKVAEA+  YAE  +
Sbjct:  230 VGVAILNHPSSFRFPTHWHVRTYGLFAANPFGLHHFYGDNSVDAGHTLKKGESFSLHYRVLLHHGDTGQGKVAEAYAEYAETDR 313          
BLAST of mRNA_M-pyrifera_M_contig83443.19486.1 vs. uniprot
Match: A0A517YK17_9BACT (Uncharacterized protein n=1 Tax=Anatilimnocola aggregata TaxID=2528021 RepID=A0A517YK17_9BACT)

HSP 1 Score: 115 bits (289), Expect = 1.370e-29
Identity = 54/80 (67.50%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    1 LGIAILDHPSSFRFPSRWQVRTYGLFAANPFGLRHFTGVRGGVGAHTLKAGETMSFHYRVLFHKGDEKEGKVAEAFKRYA 240
            LGIAI DHPSSFR P+ W VRTYGLFA NPFGL  F   +   GAHT+K GET +  YRV FHKGDEKEGKVAEA+ ++A
Sbjct:  232 LGIAIFDHPSSFRHPTTWHVRTYGLFAPNPFGLHDFPNGKDRNGAHTMKKGETFALKYRVYFHKGDEKEGKVAEAYAKFA 311          
BLAST of mRNA_M-pyrifera_M_contig83443.19486.1 vs. uniprot
Match: A0A7C4IRI8_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C4IRI8_9BACT)

HSP 1 Score: 112 bits (280), Expect = 2.820e-28
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 1
Query:    1 LGIAILDHPSSFRFPSRWQVRTYGLFAANPFGLRHFTGVRGGVGAHTLKAGETMSFHYRVLFHKGDEKEGKVAEAFKRYAEVSK 252
            +GIAI +HPSSFR+P+ W VRTYGLFAANPFG+R FTG +   G++T+  GE+++  YRV  H+GDE+EGKVAEAFK Y    K
Sbjct:  228 IGIAIFNHPSSFRYPTYWHVRTYGLFAANPFGVRDFTGNKQADGSYTVPQGESITLRYRVYLHQGDEREGKVAEAFKDYCTAVK 311          
BLAST of mRNA_M-pyrifera_M_contig83443.19486.1 vs. uniprot
Match: D2R1P0_PIRSD (Transmembrane prediction n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) TaxID=530564 RepID=D2R1P0_PIRSD)

HSP 1 Score: 112 bits (280), Expect = 3.260e-28
Identity = 50/79 (63.29%), Postives = 62/79 (78.48%), Query Frame = 1
Query:    1 LGIAILDHPSSFRFPSRWQVRTYGLFAANPFGLRHFTGVRGGVGAHTLKAGETMSFHYRVLFHKGDEKEGKVAEAFKRY 237
            +GIAIL+HP+SFR P+ W VRTYGLFAANPFGL  F  V  G G+H LK GE+++F YRVLFH+GDEK+G +  A+ RY
Sbjct:  239 VGIAILNHPTSFRHPTHWHVRTYGLFAANPFGLHDFKAVTEGDGSHVLKKGESIAFRYRVLFHEGDEKKGDIVSAWNRY 317          
BLAST of mRNA_M-pyrifera_M_contig83443.19486.1 vs. uniprot
Match: A0A2E3MVN9_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E3MVN9_9PLAN)

HSP 1 Score: 112 bits (280), Expect = 6.500e-28
Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = 1
Query:    1 LGIAILDHPSSFRFPSRWQVRTYGLFAANPFGLRHFTGVRGGVGAHTLKAGETMSFHYRVLFHKGDEKEGKVAEAFKRYAEVSK 252
            +G+AIL+HPSSFR+P+ W VRTYGLFAANPFGL HF G       HT++ GE+ S HYRVL H+GD   G+VAEAF  YA+ ++
Sbjct:  250 VGVAILNHPSSFRYPTHWHVRTYGLFAANPFGLHHFYGDNSIDAGHTMQKGESFSLHYRVLLHQGDTAAGEVAEAFGEYAQTNR 333          
BLAST of mRNA_M-pyrifera_M_contig83443.19486.1 vs. uniprot
Match: A0A832FTY3_9BACT (Uncharacterized protein n=1 Tax=Planctomycetales bacterium TaxID=2053591 RepID=A0A832FTY3_9BACT)

HSP 1 Score: 112 bits (279), Expect = 7.100e-28
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 1
Query:    1 LGIAILDHPSSFRFPSRWQVRTYGLFAANPFGLRHFTGVRGGVGAHTLKAGETMSFHYRVLFHKGDEKEGKVAEAFKRYAE 243
            +G+AIL+HPSSFRFP+ W VRTYGLFAANPFGL  F G +   G+H L+ GE+ +  YRVL H+GDE +GKVAEAF  YA+
Sbjct:  261 VGVAILNHPSSFRFPTTWHVRTYGLFAANPFGLSDFRGTKEVDGSHRLEPGESFTLRYRVLLHRGDEVQGKVAEAFAAYAQ 341          
BLAST of mRNA_M-pyrifera_M_contig83443.19486.1 vs. uniprot
Match: A0A7Y5SLW0_9BACT (PmoA family protein n=1 Tax=Pirellulales bacterium TaxID=2715253 RepID=A0A7Y5SLW0_9BACT)

HSP 1 Score: 110 bits (276), Expect = 1.340e-27
Identity = 50/84 (59.52%), Postives = 67/84 (79.76%), Query Frame = 1
Query:    1 LGIAILDHPSSFRFPSRWQVRTYGLFAANPFGLRHFTGVRGGVGAHTLKAGETMSFHYRVLFHKGDEKEGKVAEAFKRYAEVSK 252
            +GIA ++HPSSFRFP+ W VRTYGL+AANPFG++ FT  +   GA+T+  GE+++  YR+LFHKGD K+GKV+EAF+ YA  SK
Sbjct:  238 VGIAFMNHPSSFRFPTYWHVRTYGLYAANPFGVKDFTQSKSEDGAYTVPTGESITLKYRLLFHKGDAKQGKVSEAFEAYAGRSK 321          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83443.19486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1G2ZBX0_9BACT1.210e-3066.67Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2G2KRP5_9BACT1.310e-3067.47Uncharacterized protein n=1 Tax=Blastopirellula sp... [more]
A0A847GTI5_9BACT2.540e-3066.67Uncharacterized protein n=1 Tax=Candidatus Anammox... [more]
A0A2E1KFS9_9PLAN4.320e-3064.29Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A517YK17_9BACT1.370e-2967.50Uncharacterized protein n=1 Tax=Anatilimnocola agg... [more]
A0A7C4IRI8_9BACT2.820e-2860.71Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
D2R1P0_PIRSD3.260e-2863.29Transmembrane prediction n=1 Tax=Pirellula staleyi... [more]
A0A2E3MVN9_9PLAN6.500e-2859.52Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A832FTY3_9BACT7.100e-2862.96Uncharacterized protein n=1 Tax=Planctomycetales b... [more]
A0A7Y5SLW0_9BACT1.340e-2759.52PmoA family protein n=1 Tax=Pirellulales bacterium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83443contigM-pyrifera_M_contig83443:2..256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score112.5
Seed ortholog evalue1e-22
Seed eggNOG ortholog530564.Psta_2085
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Methane oxygenase PmoA
EggNOG OGs2DBNR@1,2IYX9@203682,2ZA54@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816741.3906722-CDS-M-pyrifera_M_contig83443:1..2561622816741.3906722-CDS-M-pyrifera_M_contig83443:1..256Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83443 2..256 +
1692278150.8080707-CDS-M-pyrifera_M_contig83443:1..2561692278150.8080707-CDS-M-pyrifera_M_contig83443:1..256Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83443 2..256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83443.19486.1prot_M-pyrifera_M_contig83443.19486.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83443 2..256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83443.19486.1

>prot_M-pyrifera_M_contig83443.19486.1 ID=prot_M-pyrifera_M_contig83443.19486.1|Name=mRNA_M-pyrifera_M_contig83443.19486.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
LGIAILDHPSSFRFPSRWQVRTYGLFAANPFGLRHFTGVRGGVGAHTLKA
GETMSFHYRVLFHKGDEKEGKVAEAFKRYAEVSK*
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mRNA from alignment at M-pyrifera_M_contig83443:2..256+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83443.19486.1 ID=mRNA_M-pyrifera_M_contig83443.19486.1|Name=mRNA_M-pyrifera_M_contig83443.19486.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig83443:2..256+ (Macrocystis pyrifera P11B4 male)
CTCGGAATTGCAATCCTCGACCACCCCAGCAGCTTTCGTTTTCCGTCTCG GTGGCAGGTGAGAACGTACGGACTCTTCGCGGCGAACCCATTCGGCCTGC GGCACTTCACTGGAGTCAGAGGAGGTGTCGGAGCCCATACGCTGAAGGCA GGCGAGACGATGTCGTTTCACTACCGCGTACTCTTCCACAAGGGCGACGA AAAAGAGGGTAAGGTCGCCGAAGCGTTCAAGCGGTACGCGGAGGTAAGCA AGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83443:2..256+

>mRNA_M-pyrifera_M_contig83443.19486.1 ID=mRNA_M-pyrifera_M_contig83443.19486.1|Name=mRNA_M-pyrifera_M_contig83443.19486.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig83443:2..256+ (Macrocystis pyrifera P11B4 male)
CTCGGAATTGCAATCCTCGACCACCCCAGCAGCTTTCGTTTTCCGTCTCG
GTGGCAGGTGAGAACGTACGGACTCTTCGCGGCGAACCCATTCGGCCTGC
GGCACTTCACTGGAGTCAGAGGAGGTGTCGGAGCCCATACGCTGAAGGCA
GGCGAGACGATGTCGTTTCACTACCGCGTACTCTTCCACAAGGGCGACGA
AAAAGAGGGTAAGGTCGCCGAAGCGTTCAAGCGGTACGCGGAGGTAAGCA
AGTAGCTCGGAATTGCAATCCTCGACCACCCCAGCAGCTTTCGTTTTCCG
TCTCGGTGGCAGGTGAGAACGTACGGACTCTTCGCGGCGAACCCATTCGG
CCTGCGGCACTTCACTGGAGTCAGAGGAGGTGTCGGAGCCCATACGCTGA
AGGCAGGCGAGACGATGTCGTTTCACTACCGCGTACTCTTCCACAAGGGC
GACGAAAAAGAGGGTAAGGTCGCCGAAGCGTTCAAGCGGTACGCGGAGGT
AAGCAAGTAG
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