mRNA_M-pyrifera_M_contig83436.19482.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83436.19482.1
Unique NamemRNA_M-pyrifera_M_contig83436.19482.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig83436.19482.1 vs. uniprot
Match: A0A4D9D672_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D672_9STRA)

HSP 1 Score: 132 bits (331), Expect = 8.020e-35
Identity = 65/101 (64.36%), Postives = 75/101 (74.26%), Query Frame = 1
Query:    1 DKNPMLRDGGSGDWIGTFAGHKGAVWSAKLNASATRCGTGSADFSARVWDACSGEVLGDFGHGHIVKSVDFSLSGRRFFTGGNEGKLRLFDLSGASTPRST 303
            DK PMLR+G +GDWIGTF GHKGAVWSAKLN  AT   TGS DFSARVWDA +G  L  F H HIV++V+F+   RRF +GGNEGKLR++DL   S P  T
Sbjct:   44 DKEPMLRNGETGDWIGTFKGHKGAVWSAKLNKDATFALTGSGDFSARVWDAITGAELEHFPHKHIVRTVEFAPDSRRFVSGGNEGKLRVYDLMEPSAPPMT 144          
BLAST of mRNA_M-pyrifera_M_contig83436.19482.1 vs. uniprot
Match: A0A7S3LHF8_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LHF8_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.370e-34
Identity = 73/142 (51.41%), Postives = 89/142 (62.68%), Query Frame = 1
Query:    1 DKNPMLRDGGSGDWIGTFAGHKGAVWSAKLNASATRCGTGSADFSARVWDACSGEVLGDFGHGHIVKSVDFSLSGRRFFTGGNEGKLRLFDLSGAS-TPRSTDAALALSLGSKIRRVVALPGDEDAVLVGCEDGGLRVVDVR 423
            DK PM+R   +GDWIGT  GHKGAVWSA LN  ATR  TGSADFSA++W++ SG+ +  F H HIVKSV+FS  G +  TGG +  LR+FDL     TP S DA        KIRR   L  +   V+  CEDG +R  D+R
Sbjct:   59 DKLPMVRWADNGDWIGTLEGHKGAVWSACLNHDATRAATGSADFSAKLWNSISGKEIHTFDHKHIVKSVEFSKDGTQLLTGGLDKTLRIFDLGNPDQTPISLDAK------DKIRRSSWLNSENQIVICACEDGFIRKWDIR 194          
BLAST of mRNA_M-pyrifera_M_contig83436.19482.1 vs. uniprot
Match: A0A7S1GDR9_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GDR9_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.430e-34
Identity = 67/117 (57.26%), Postives = 85/117 (72.65%), Query Frame = 1
Query:    1 DKNPMLRDGGSGDWIGTFAGHKGAVWSAKLNASATRCGTGSADFSARVWDACSGEVLGDFGHGHIVKSVDFSLSGRRFFTGGNEGKLRLFDLSGASTPRSTDAALALSLGSKIRRVV 351
            DK PMLR G +GDWIGTF GHKGAVWSAKLN SATRC TG+ADFSA++W+A SG+ +  F H HIVK+VDF+  G R  TGG++  +R+FDLS      +T A      GSKI++++
Sbjct:   60 DKLPMLRTGATGDWIGTFEGHKGAVWSAKLNRSATRCATGAADFSAKLWNAESGDEVHHFDHKHIVKTVDFAPEGGRLATGGHDKTIRVFDLSAPEADPTTVAH-----GSKIQKLL 171          
BLAST of mRNA_M-pyrifera_M_contig83436.19482.1 vs. uniprot
Match: A0A8H7C093_9FUNG (Uncharacterized protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7C093_9FUNG)

HSP 1 Score: 130 bits (327), Expect = 3.500e-34
Identity = 75/143 (52.45%), Postives = 87/143 (60.84%), Query Frame = 1
Query:    1 DKNPMLRDGGSGDWIGTFAGHKGAVWSAKLNASATRCGTGSADFSARVWDACSGEVLGDFGHGHIVKSVDFSLSGRRFFTGGNEGKLRLFDLSGASTPRSTDAALALSLGSKIRRVVALPGDED--AVLVGCEDGGLRVVDVR 423
            D NPMLRDG +GDWIGTF GHKGAVWSA+L   A R  TGSADFSA+VWD  +G+ L  F H HIV++VDFS  G R  TGG E KLR+FDL     P       AL        V A+  DE    +L   EDG +R  D+R
Sbjct:   41 DGNPMLRDGITGDWIGTFYGHKGAVWSARLTREAHRAVTGSADFSAKVWDTFTGDELHSFAHQHIVRAVDFSADGTRIVTGGLEQKLRIFDLYRPDAP-------ALEAVGHTGTVKAVAWDEKRHTILSAGEDGCIRFWDLR 176          
BLAST of mRNA_M-pyrifera_M_contig83436.19482.1 vs. uniprot
Match: A0A1D1XXS4_9ARAE (Serine-threonine kinase receptor-associated protein n=11 Tax=Eukaryota TaxID=2759 RepID=A0A1D1XXS4_9ARAE)

HSP 1 Score: 130 bits (326), Expect = 7.150e-34
Identity = 69/144 (47.92%), Postives = 90/144 (62.50%), Query Frame = 1
Query:    1 DKNPMLRDGGSGDWIGTFAGHKGAVWSAKLNASATRCGTGSADFSARVWDACSGEVLGDFGHGHIVKSVDFSLSGRRFFTGGNEGKLRLFDLSGASTPRSTDAALALSLGSKIRRVVALPGDEDAVLVGCEDGGLRVVDVRKGG 432
            D NPMLRDG +GDWIGTF GHKGAVWSAKL+  A++  T SADF+A+VWD  +G++L  F H HIV+S D S  G R  +GG E KLR+FDL+    P S  A    ++ S     V    + + +L   +D  +R+ DVR  G
Sbjct:   48 DGNPMLRDGPTGDWIGTFTGHKGAVWSAKLSKDASKAVTASADFTAKVWDTYTGDILHSFTHDHIVRSADLSEDGTRIVSGGQEKKLRIFDLNKPEEPASEAAGHESTIKS-----VIWDSERNVILSAGDDKIIRIWDVRNFG 186          
BLAST of mRNA_M-pyrifera_M_contig83436.19482.1 vs. uniprot
Match: UPI000B4265A7 (serine-threonine kinase receptor-associated protein isoform X2 n=1 Tax=Sorghum bicolor TaxID=4558 RepID=UPI000B4265A7)

HSP 1 Score: 128 bits (321), Expect = 8.290e-34
Identity = 75/145 (51.72%), Postives = 95/145 (65.52%), Query Frame = 1
Query:    1 DKNPMLRDGGSGDWIGTFAGHKGAVWSAKLNASATRCGTGSADFSARVWDACSGEVLGDFGHGHIVKSVDFSLSGRRFFTGGNEGKLRLFDLSGA-STPRSTDAALALSLGSKIRRVVALPGDEDAVLVGCED-GGLRVVDVRKG 429
            D NPMLR+G +GDWIGTF GHKGAVWSA L+ +A R  +GSADFSA++WDA +G+VL  F H HIV++  FS       TGG E  LR++DL+   +TPR  D     S GS +R V  L  D+  +L  C D GG+R+ DVR G
Sbjct:   40 DSNPMLRNGETGDWIGTFQGHKGAVWSACLDTNALRAASGSADFSAKIWDALTGDVLHSFEHKHIVRACAFSEDTHMLLTGGFEKILRIYDLNRPDATPREIDK----SPGS-VRTVTWLHSDQ-TILSSCADLGGVRLWDVRSG 178          
BLAST of mRNA_M-pyrifera_M_contig83436.19482.1 vs. uniprot
Match: A0A7S2LD36_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LD36_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.370e-33
Identity = 69/140 (49.29%), Postives = 87/140 (62.14%), Query Frame = 1
Query:    1 DKNPMLRDGGSGDWIGTFAGHKGAVWSAKLNASATRCGTGSADFSARVWDACSGEVLGDFGHGHIVKSVDFSLSGRRFFTGGNEGKLRLFDLSGASTPRSTDAALALSLGSKIRRVVALPGDEDAVLVGCEDGGLRVVDV 420
            DK PMLRDG +GDWIGTFAGHKGAVWS +L+ +A   GT S DFS +VWDA +G+ L  F H H+VK+VD+SL  +R  TGG+EG LR+FD+S    P+        S   K+        D   VL   EDG +R  +V
Sbjct:   61 DKMPMLRDGATGDWIGTFAGHKGAVWSCRLDPAALLAGTASGDFSVQVWDAITGQSLHSFPHKHVVKTVDWSLDSKRLATGGHEGILRIFDMS---QPKKEPLMFDQSSKEKVSISKCNWLDNSTVLAAGEDGNIRFWNV 197          
BLAST of mRNA_M-pyrifera_M_contig83436.19482.1 vs. uniprot
Match: UPI001425B925 (serine-threonine kinase receptor-associated protein-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425B925)

HSP 1 Score: 129 bits (323), Expect = 1.870e-33
Identity = 75/140 (53.57%), Postives = 86/140 (61.43%), Query Frame = 1
Query:    1 DKNPMLRDGGSGDWIGTFAGHKGAVWSAKLNASATRCGTGSADFSARVWDACSGEVLGDFGHGHIVKSVDFSLSGRRFFTGGNEGKLRLFDLSGASTPRSTDAALALSLGSKIRRVVALPGDEDAVLVGCEDGGLRVVDV 420
            D  PMLR G +GDWIGTF GHKGAVWSA LNA ATR  TG+ DFSA+VWD+  G  L +F H HIVK+VDFS   R   TG NE  LR+FDLS    P S    LA   GS IR  +    D   ++   ED  +RV DV
Sbjct:   40 DGKPMLRQGDTGDWIGTFEGHKGAVWSATLNAEATRAATGAGDFSAKVWDSVGGSELHNFSHKHIVKAVDFSRDTRLLLTGSNEKLLRIFDLS---QPESDPEILAGHEGS-IRHALWC-ADNKRIITAGEDKTVRVWDV 174          
BLAST of mRNA_M-pyrifera_M_contig83436.19482.1 vs. uniprot
Match: A0A8B8AVE5_CRAVI (serine-threonine kinase receptor-associated protein-like n=3 Tax=Crassostrea TaxID=6564 RepID=A0A8B8AVE5_CRAVI)

HSP 1 Score: 129 bits (323), Expect = 2.510e-33
Identity = 68/143 (47.55%), Postives = 86/143 (60.14%), Query Frame = 1
Query:    1 DKNPMLRDGGSGDWIGTFAGHKGAVWSAKLNASATRCGTGSADFSARVWDACSGEVLGDFGHGHIVKSVDFSLSGRRFFTGGNEGKLRLFDLSGASTPRSTDAALALSLGSKIRRVVALPGDEDAVLVGCEDGGLRVVDVRKG 429
            D NPMLR G +GDWIGTF GHKGAVW A +N  ATR  TG+ADFSA++WD+ SGE L  F H HIVKSVDF + G +  TG NE  LR+FDL+    P S          + IR  +    D+  ++   +D  +R+ D   G
Sbjct:   59 DGNPMLRQGDTGDWIGTFKGHKGAVWGATINKDATRAATGAADFSAKIWDSLSGEELHSFAHKHIVKSVDFDVDGTQLLTGSNEKLLRIFDLN---QPESEAKVTLTGHENNIRAAIFAHFDKQ-IISASDDKTVRIWDAVSG 197          
BLAST of mRNA_M-pyrifera_M_contig83436.19482.1 vs. uniprot
Match: A0A8H7S2E8_9FUNG (Uncharacterized protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S2E8_9FUNG)

HSP 1 Score: 128 bits (321), Expect = 3.080e-33
Identity = 68/141 (48.23%), Postives = 91/141 (64.54%), Query Frame = 1
Query:    1 DKNPMLRDGGSGDWIGTFAGHKGAVWSAKLNASATRCGTGSADFSARVWDACSGEVLGDFGHGHIVKSVDFSLSGRRFFTGGNEGKLRLFDLSGASTPRSTDAALALSLGSKIRRVVALPGDEDAVLVGCEDGGLRVVDVR 423
            D NPMLR+G +GDWIGTF GHKGAVWSA+L+  A R  TGSADF+A+VWD  +G+ L  F H HIV++V+FS  G +  TGG E KLR+FDL      R     + +   S   + V    +++ ++ G EDG +RV D+R
Sbjct:   44 DGNPMLREGQTGDWIGTFLGHKGAVWSARLSKEAHRAVTGSADFTAKVWDTFTGQELHSFAHQHIVRAVNFSPDGTKIATGGQEKKLRIFDLY-----RPDAEPIGIDDHSGTIKTVVWHPNQNIIMSGGEDGIIRVRDLR 179          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83436.19482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4D9D672_9STRA8.020e-3564.36Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3LHF8_9STRA1.370e-3451.41Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S1GDR9_9STRA1.430e-3457.26Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A8H7C093_9FUNG3.500e-3452.45Uncharacterized protein n=1 Tax=Apophysomyces ossi... [more]
A0A1D1XXS4_9ARAE7.150e-3447.92Serine-threonine kinase receptor-associated protei... [more]
UPI000B4265A78.290e-3451.72serine-threonine kinase receptor-associated protei... [more]
A0A7S2LD36_9STRA1.370e-3349.29Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
UPI001425B9251.870e-3353.57serine-threonine kinase receptor-associated protei... [more]
A0A8B8AVE5_CRAVI2.510e-3347.55serine-threonine kinase receptor-associated protei... [more]
A0A8H7S2E8_9FUNG3.080e-3348.23Uncharacterized protein n=1 Tax=Mucor circinatus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83436contigM-pyrifera_M_contig83436:31..465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score124.4
Seed ortholog evalue4.2e-26
Seed eggNOG ortholog242159.ABO98208
KEGG koko:K13137
KEGG Pathwayko03013,map03013
KEGG ModuleM00426
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0009966,GO:0009968,GO:0010646,GO:0010648,GO:0017015,GO:0023051,GO:0023057,GO:0030512,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0065007,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:1903844,GO:1903845
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGs34H9X@3041,37JGA@33090,KOG0278@1,KOG0278@2759
COG Functional cat.I
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons1
Model size435
Cds size423
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816741.226411-CDS-M-pyrifera_M_contig83436:30..4531622816741.226411-CDS-M-pyrifera_M_contig83436:30..453Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83436 31..453 -
1692278150.7158096-CDS-M-pyrifera_M_contig83436:30..4531692278150.7158096-CDS-M-pyrifera_M_contig83436:30..453Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83436 31..453 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816741.2408144-UTR-M-pyrifera_M_contig83436:453..4651622816741.2408144-UTR-M-pyrifera_M_contig83436:453..465Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83436 454..465 -
1692278150.7288039-UTR-M-pyrifera_M_contig83436:453..4651692278150.7288039-UTR-M-pyrifera_M_contig83436:453..465Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83436 454..465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83436.19482.1prot_M-pyrifera_M_contig83436.19482.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83436 31..453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83436.19482.1

>prot_M-pyrifera_M_contig83436.19482.1 ID=prot_M-pyrifera_M_contig83436.19482.1|Name=mRNA_M-pyrifera_M_contig83436.19482.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
MLRDGGSGDWIGTFAGHKGAVWSAKLNASATRCGTGSADFSARVWDACSG
EVLGDFGHGHIVKSVDFSLSGRRFFTGGNEGKLRLFDLSGASTPRSTDAA
LALSLGSKIRRVVALPGDEDAVLVGCEDGGLRVVDVRKGGV
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mRNA from alignment at M-pyrifera_M_contig83436:31..465-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83436.19482.1 ID=mRNA_M-pyrifera_M_contig83436.19482.1|Name=mRNA_M-pyrifera_M_contig83436.19482.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=435bp|location=Sequence derived from alignment at M-pyrifera_M_contig83436:31..465- (Macrocystis pyrifera P11B4 male)
GACAAGAATCCCATGTTGCGCGATGGTGGGAGTGGAGATTGGATCGGGAC GTTTGCGGGGCACAAGGGGGCGGTGTGGTCTGCGAAGCTGAACGCGAGCG CGACGCGTTGTGGCACGGGGTCTGCGGATTTCAGCGCTCGGGTGTGGGAT GCGTGTAGTGGGGAGGTGCTTGGGGATTTTGGGCACGGTCACATTGTGAA GAGCGTGGATTTCTCTCTGAGCGGACGTCGTTTCTTCACCGGTGGCAACG AGGGCAAACTGCGACTGTTCGACCTCTCTGGAGCCTCCACGCCCCGCAGC ACCGACGCCGCGCTGGCTCTATCGCTGGGTTCCAAGATCCGCCGCGTTGT GGCCTTACCTGGCGACGAAGACGCCGTGTTGGTGGGGTGTGAGGATGGGG GATTGCGGGTGGTGGATGTGAGGAAAGGAGGCGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83436:31..465-

>mRNA_M-pyrifera_M_contig83436.19482.1 ID=mRNA_M-pyrifera_M_contig83436.19482.1|Name=mRNA_M-pyrifera_M_contig83436.19482.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig83436:31..465- (Macrocystis pyrifera P11B4 male)
ATGTTGCGCGATGGTGGGAGTGGAGATTGGATCGGGACGTTTGCGGGGCA
CAAGGGGGCGGTGTGGTCTGCGAAGCTGAACGCGAGCGCGACGCGTTGTG
GCACGGGGTCTGCGGATTTCAGCGCTCGGGTGTGGGATGCGTGTAGTGGG
GAGGTGCTTGGGGATTTTGGGCACGGTCACATTGTGAAGAGCGTGGATTT
CTCTCTGAGCGGACGTCGTTTCTTCACCGGTGGCAACGAGGGCAAACTGC
GACTGTTCGACCTCTCTGGAGCCTCCACGCCCCGCAGCACCGACGCCGCG
CTGGCTCTATCGCTGGGTTCCAAGATCCGCCGCGTTGTGGCCTTACCTGG
CGACGAAGACGCCGTGTTGGTGGGGTGTGAGGATGGGGGATTGCGGGTGG
TGGATGTGAGGAAAGGAGGCGTTATGTTGCGCGATGGTGGGAGTGGAGAT
TGGATCGGGACGTTTGCGGGGCACAAGGGGGCGGTGTGGTCTGCGAAGCT
GAACGCGAGCGCGACGCGTTGTGGCACGGGGTCTGCGGATTTCAGCGCTC
GGGTGTGGGATGCGTGTAGTGGGGAGGTGCTTGGGGATTTTGGGCACGGT
CACATTGTGAAGAGCGTGGATTTCTCTCTGAGCGGACGTCGTTTCTTCAC
CGGTGGCAACGAGGGCAAACTGCGACTGTTCGACCTCTCTGGAGCCTCCA
CGCCCCGCAGCACCGACGCCGCGCTGGCTCTATCGCTGGGTTCCAAGATC
CGCCGCGTTGTGGCCTTACCTGGCGACGAAGACGCCGTGTTGGTGGGGTG
TGAGGATGGGGGATTGCGGGTGGTGGATGTGAGGAAAGGAGGCGTT
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