mRNA_M-pyrifera_M_contig83363.19469.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83363.19469.1
Unique NamemRNA_M-pyrifera_M_contig83363.19469.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig83363.19469.1 vs. uniprot
Match: A0A553NPS4_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553NPS4_TIGCA)

HSP 1 Score: 70.5 bits (171), Expect = 2.320e-12
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 1
Query:   31 LKDPSASSDLYKFEKAVLEPTQYKFGVLYRKKGQHLDDDMFSNADGSPEFNLFLRFLGQKIALKGWSKVR 240
            +  P    DL   EK       +KFGV+Y K GQ LDD++FSN +GSP+F+ FL  LGQ+I LKGW K +
Sbjct:  356 ISHPGIQKDLLSLEKQE-GAMNFKFGVIYAKAGQVLDDELFSNVEGSPDFDRFLDLLGQRIRLKGWIKYK 424          
BLAST of mRNA_M-pyrifera_M_contig83363.19469.1 vs. uniprot
Match: A0A8C4QVF9_EPTBU (GTPase activating Rap/RanGAP domain like 3 n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4QVF9_EPTBU)

HSP 1 Score: 69.7 bits (169), Expect = 4.290e-12
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1
Query:   97 YKFGVLYRKKGQHLDDDMFSNADGSPEFNLFLRFLGQKIALKGWSKVR 240
            +KFGVLY K GQ  DD+MFSNA GSP+F  FL+ LG++I LKGW+  R
Sbjct:  172 FKFGVLYAKAGQLTDDEMFSNATGSPDFERFLKLLGERITLKGWTAYR 219          
BLAST of mRNA_M-pyrifera_M_contig83363.19469.1 vs. uniprot
Match: D3BL43_POLPP (RapGAP/RanGAP domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BL43_POLPP)

HSP 1 Score: 68.6 bits (166), Expect = 1.100e-11
Identity = 27/49 (55.10%), Postives = 40/49 (81.63%), Query Frame = 1
Query:   94 QYKFGVLYRKKGQHLDDDMFSNADGSPEFNLFLRFLGQKIALKGWSKVR 240
            +Y+FG+LYRKK Q  +++MFSN D SPE++ FL F+G+KI LKGW++ +
Sbjct:  953 EYRFGILYRKKDQFTENEMFSNVDTSPEYDEFLEFIGKKIELKGWNQFK 1001          
BLAST of mRNA_M-pyrifera_M_contig83363.19469.1 vs. uniprot
Match: UPI000BA82664 (GTPase-activating Rap/Ran-GAP domain-like protein 3 n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA82664)

HSP 1 Score: 67.8 bits (164), Expect = 2.050e-11
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 1
Query:   97 YKFGVLYRKKGQHLDDDMFSNADGSPEFNLFLRFLGQKIALKGWSKVR 240
            +KFGVLY K GQ +DDDMFSN +GS  F+ FL  LG++I LKGW K R
Sbjct:  233 FKFGVLYAKVGQTVDDDMFSNENGSKNFDQFLSLLGERIRLKGWDKYR 280          
BLAST of mRNA_M-pyrifera_M_contig83363.19469.1 vs. uniprot
Match: UPI0008F9BC73 (GTPase-activating Rap/Ran-GAP domain-like protein 3 isoform X1 n=4 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9BC73)

HSP 1 Score: 67.8 bits (164), Expect = 2.050e-11
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 1
Query:   97 YKFGVLYRKKGQHLDDDMFSNADGSPEFNLFLRFLGQKIALKGWSKVR 240
            +KFGVLY K GQ  DD+MFSN +GS EF+ F+  LG+KI LKGW K R
Sbjct:  281 FKFGVLYTKPGQPTDDEMFSNEEGSEEFDNFIDLLGEKIRLKGWDKYR 328          
BLAST of mRNA_M-pyrifera_M_contig83363.19469.1 vs. uniprot
Match: UPI000614E774 (GTPase-activating Rap/Ran-GAP domain-like protein 3 n=1 Tax=Megachile rotundata TaxID=143995 RepID=UPI000614E774)

HSP 1 Score: 67.0 bits (162), Expect = 3.830e-11
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1
Query:   97 YKFGVLYRKKGQHLDDDMFSNADGSPEFNLFLRFLGQKIALKGWSKVR 240
            +KFG++Y KKGQ  DD+M SN  GSPEF+ FL  LG++I LK W K R
Sbjct:  281 FKFGIIYAKKGQTTDDEMLSNEKGSPEFDKFLEILGERIRLKNWDKYR 328          
BLAST of mRNA_M-pyrifera_M_contig83363.19469.1 vs. uniprot
Match: A0A182SDK6_9DIPT (Rap-GAP domain-containing protein n=1 Tax=Anopheles maculatus TaxID=74869 RepID=A0A182SDK6_9DIPT)

HSP 1 Score: 65.9 bits (159), Expect = 3.990e-11
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    1 MLSHYRYWERLKDPSA--SSDLYKFEKAVLEPTQ----YKFGVLYRKKGQHLDDDMFSNADGSPEFNLFLRFLGQKIALKGWSKVR 240
            +LS++   +  K P    S+D+ K +  +LE  +    +KFGV+Y K GQ LDD+M SN  GSPEF+ FL  LG+KI LK W + R
Sbjct:   47 ILSNFTLMDSNKSPKEIFSADIQK-DLLLLEEQEGSVNFKFGVVYMKAGQKLDDEMLSNETGSPEFDDFLTLLGEKIRLKDWERYR 131          
BLAST of mRNA_M-pyrifera_M_contig83363.19469.1 vs. uniprot
Match: A0A182UGH3_9DIPT (Rap-GAP domain-containing protein n=1 Tax=Anopheles melas TaxID=34690 RepID=A0A182UGH3_9DIPT)

HSP 1 Score: 65.9 bits (159), Expect = 5.680e-11
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    1 MLSHYRYWERLKDPSA--SSDLYKFEKAVLEPTQ----YKFGVLYRKKGQHLDDDMFSNADGSPEFNLFLRFLGQKIALKGWSKVR 240
            +LS++   +  K P    S+D+ K +  +LE  +    +KFGV+Y K GQ LDD+M SN  GSPEF+ FL  LG+KI LK W + R
Sbjct:   56 ILSNFTLMDSNKSPKEIFSADIQK-DLLLLEEQEGSVNFKFGVVYMKAGQKLDDEMLSNETGSPEFDDFLTLLGEKIRLKDWERYR 140          
BLAST of mRNA_M-pyrifera_M_contig83363.19469.1 vs. uniprot
Match: A0A182RC03_ANOFN (Uncharacterized protein n=1 Tax=Anopheles funestus TaxID=62324 RepID=A0A182RC03_ANOFN)

HSP 1 Score: 66.2 bits (160), Expect = 6.950e-11
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    1 MLSHYRYWERLKDPSA--SSDLYKFEKAVLEPTQ----YKFGVLYRKKGQHLDDDMFSNADGSPEFNLFLRFLGQKIALKGWSKVR 240
            +LS++   +  K P    S+D+ K +  +LE  +    +KFGV+Y K GQ LDD+M SN  GSPEF+ FL  LG+KI LK W + R
Sbjct:   32 ILSNFTLMDSNKSPKEIFSADIQK-DLLLLEEQEGSVNFKFGVVYMKAGQKLDDEMLSNESGSPEFDDFLTLLGEKIRLKDWERYR 116          
BLAST of mRNA_M-pyrifera_M_contig83363.19469.1 vs. uniprot
Match: A0A182VNP0_ANOME (Rap-GAP domain-containing protein n=1 Tax=Anopheles merus TaxID=30066 RepID=A0A182VNP0_ANOME)

HSP 1 Score: 65.5 bits (158), Expect = 9.410e-11
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 1
Query:   97 YKFGVLYRKKGQHLDDDMFSNADGSPEFNLFLRFLGQKIALKGWSKVR 240
            +KFGV+Y K GQ LDD+M SN  GSPEF+ FL  LG+KI LK W + R
Sbjct:  166 FKFGVVYMKAGQKLDDEMLSNETGSPEFDDFLALLGEKIRLKDWERYR 213          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83363.19469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A553NPS4_TIGCA2.320e-1248.57Uncharacterized protein n=1 Tax=Tigriopus californ... [more]
A0A8C4QVF9_EPTBU4.290e-1262.50GTPase activating Rap/RanGAP domain like 3 n=1 Tax... [more]
D3BL43_POLPP1.100e-1155.10RapGAP/RanGAP domain-containing protein n=1 Tax=Po... [more]
UPI000BA826642.050e-1162.50GTPase-activating Rap/Ran-GAP domain-like protein ... [more]
UPI0008F9BC732.050e-1162.50GTPase-activating Rap/Ran-GAP domain-like protein ... [more]
UPI000614E7743.830e-1158.33GTPase-activating Rap/Ran-GAP domain-like protein ... [more]
A0A182SDK6_9DIPT3.990e-1144.19Rap-GAP domain-containing protein n=1 Tax=Anophele... [more]
A0A182UGH3_9DIPT5.680e-1144.19Rap-GAP domain-containing protein n=1 Tax=Anophele... [more]
A0A182RC03_ANOFN6.950e-1144.19Uncharacterized protein n=1 Tax=Anopheles funestus... [more]
A0A182VNP0_ANOME9.410e-1160.42Rap-GAP domain-containing protein n=1 Tax=Anophele... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83363contigM-pyrifera_M_contig83363:43..282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score65.9
Seed ortholog evalue1e-08
Seed eggNOG ortholog6211.A0A068YAW4
Preferred nameGARNL3
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG free text desc.Rap Ran-GAP domain-like
EggNOG OGs38CU7@33154,3BD3Y@33208,3D071@33213,KOG3686@1,KOG3686@2759
COG Functional cat.T
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size240
Cds size240
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816740.6309283-CDS-M-pyrifera_M_contig83363:42..2821622816740.6309283-CDS-M-pyrifera_M_contig83363:42..282Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83363 43..282 -
1692278150.4335375-CDS-M-pyrifera_M_contig83363:42..2821692278150.4335375-CDS-M-pyrifera_M_contig83363:42..282Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83363 43..282 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83363.19469.1prot_M-pyrifera_M_contig83363.19469.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83363 43..282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83363.19469.1

>prot_M-pyrifera_M_contig83363.19469.1 ID=prot_M-pyrifera_M_contig83363.19469.1|Name=mRNA_M-pyrifera_M_contig83363.19469.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
MLSHYRYWERLKDPSASSDLYKFEKAVLEPTQYKFGVLYRKKGQHLDDDM
FSNADGSPEFNLFLRFLGQKIALKGWSKVR
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mRNA from alignment at M-pyrifera_M_contig83363:43..282-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83363.19469.1 ID=mRNA_M-pyrifera_M_contig83363.19469.1|Name=mRNA_M-pyrifera_M_contig83363.19469.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig83363:43..282- (Macrocystis pyrifera P11B4 male)
ATGCTCTCCCACTACAGGTACTGGGAGAGGCTCAAGGACCCCAGCGCTAG CAGCGACCTCTACAAGTTCGAGAAGGCTGTGCTCGAGCCCACGCAGTACA AGTTCGGCGTTCTCTACCGCAAGAAGGGCCAGCATCTCGATGACGACATG TTCTCCAACGCCGACGGCAGCCCCGAGTTCAACCTCTTCCTCCGCTTCCT CGGCCAGAAGATTGCCCTCAAGGGCTGGAGCAAGGTACGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83363:43..282-

>mRNA_M-pyrifera_M_contig83363.19469.1 ID=mRNA_M-pyrifera_M_contig83363.19469.1|Name=mRNA_M-pyrifera_M_contig83363.19469.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig83363:43..282- (Macrocystis pyrifera P11B4 male)
ATGCTCTCCCACTACAGGTACTGGGAGAGGCTCAAGGACCCCAGCGCTAG
CAGCGACCTCTACAAGTTCGAGAAGGCTGTGCTCGAGCCCACGCAGTACA
AGTTCGGCGTTCTCTACCGCAAGAAGGGCCAGCATCTCGATGACGACATG
TTCTCCAACGCCGACGGCAGCCCCGAGTTCAACCTCTTCCTCCGCTTCCT
CGGCCAGAAGATTGCCCTCAAGGGCTGGAGCAAGGTACGCATGCTCTCCC
ACTACAGGTACTGGGAGAGGCTCAAGGACCCCAGCGCTAGCAGCGACCTC
TACAAGTTCGAGAAGGCTGTGCTCGAGCCCACGCAGTACAAGTTCGGCGT
TCTCTACCGCAAGAAGGGCCAGCATCTCGATGACGACATGTTCTCCAACG
CCGACGGCAGCCCCGAGTTCAACCTCTTCCTCCGCTTCCTCGGCCAGAAG
ATTGCCCTCAAGGGCTGGAGCAAGGTACGC
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